Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------ICU4                                                     --------->YAB1                                                  --------->YAB1                                                  <---------ICU4                                                 <---------YAB1                                               <---------ICU4 --------->YAB1                                            --------->YAB1 <---------ICU4               <---------ANAC46             <---------ICU4 --------->YAB1            <---------AtMYB61              <---------YAB1 <---------YAB1         <---------AtMYB61               --------->YAB1 <---------ICU4                 <---------WOX13(1)       <--------ATHB1                 --------->YAB1<---------YAB1                   --------->ATHB12       --------->YAB1          --------->YAB1 <---------YAB1  <---------ICU4        <---------YAB1       <---------ICU4        <---------WOX13(1)--------->YAB1<---------YAB1<------ZmHOX2a(2)      <---------ATHB12    <---------YAB1<---------YAB1  --------->YAB1    <---------ARR11(3)      --------->ICU4    ------>ZmHOX2a(1)<---------ICU4<---------YAB1     --------->ARR11(3)   <-----   attgctcaatgatggtggtgttgttcctatgaatgatatatcatcatcatcatcatcatcatcatcatcatcttaagatcacaagtttgattggattatg  5405600                        <---------DAG2                               <---------ANAC46                        <----------DOF2                              <---------ANAC58              --------->DAG2                             --------->DAG2             ---------->DOF2         <-----------HVH21  ---------->DOF2        --------->YAB1 <---------------AGL15         --------->AHL20(2)            <-----------RAV1(1)   <-------TEIL       <-----------------AG    ----------->GT1        <---------ANAC58 ----YAB1 --------->AHL20(2)        <----------ID1  --------->AHL20(2)            ------->TEIL <-----   ctagattcaaaaataaaaagttgtgacttttttggaaaacgtcaagagtggaaaataaaaaagggattttggtgtgttcatatgtatgttggggtctctt  5405700                                                                              --------->ARR14(2)                                                    <---------ANAC58          <---------ARR14(2)                                                  --------->ICU4       <------NtERF2                                                <---------GLK1(1)     --------->LBD16                                               --------->ARR14(2)    --------->LBD16    <------MYB46(1)                            <---------ARR14(2)   <---------LBD16    <------MYB83                           <---------LBD16         <---------ATERF1(1) <---------ANAC58                      ------->TEIL <---------ANAC58<------NtERF2 <---------ANAC58                      <---------ARR14(2)         <---------DEAR3(1) <---------ANAC46     <----------DOF2  --------->ARR14(2)         --------->ETT(2)               ---- -----DOF2          ---------->ID1    <---------CCA1(2)         <-----------HVH21 <----------ID1 ====   ttggcttggtatcaataaacttgtctttttttctctaaatgtatctgtggaaatgcttatccctctggtcgccggaaacaaatacggacaaattgtctcc  5405800                                                                                      <--------------                                                                                      --------->ANAC46                                                                                     ------>MYB46(1)                                                                                     -------->P                                                                                     --------->MYB52(1)                                                                                    --------->MYB55(1)                                                                                   --------->DEAR3(1)                                                                                   <---------MYB111(2)                                                                                   --------->MYB46(3)                                                                                   <---------MYB55(2)                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                              <-----------HVH21 <----         --------->ARR14(2)                                               <---------LBD16       -----    ------>NtERF2                                                        ------>ZmHOX2a(2)--------->ARR14(2)   --------->LBD16                                                     <---------ARR11(3) <---------ARR14(2)   ------>NtERF2                              --------->ICU4           --------->ARR11(3) <---------GLK1(2) <---------LBD16        <---------YAB1        <---------YAB1          --------->YAB1<---------ALFIN1 -->ZmHOX2a(1)       <------ZmHOX2a(2)      <---------ICU4           <---------ATHB12------>MYB83<--- ===========================HOX2a_HOX2a---------->DOF2   <-----------GT1 ============================   ttctccggccatatttgtattggatcaacattgtattgctcaaaagtcattactgtttttctctgtctccaatgatctcgggtcacccacccgattcgga  5405900                                                                    ================================= <------ZmHOX2a(1)                                                  ---------->DOF2 ---AGL1                                   <----------DOF2        --------->AHL20(2) -----ARR14(2)                           <------NtERF2            <---------AHL20(2)             ---- ---->ARR14(2)                  <---------AHL20(2)            <---------AHL20(2)               <----- ---ZmHOX2a(2)  <---------MYB52(1)     <---------RAP2.6(2)    --------->AHL20(2)       <---------AHL20(2) =======HOX2a_HOX2a         --------->AHL20(2)               --------->AHL20(2)       --------->AHL20(2)   tcaggacaacatcgtttcgttatgggccgattatataatgggccgcttgaatgtctcgtcttatttaattaaaagaaaaaaacacattttaaatttgaat  5406000            <---------REM1(1)            <---------MYB46(3)          <-------GAMYB         <-----------RAV1(1)         --------->ALFIN1      ------->MYC4                                                           <---------DEAR3(1)      <-------MYC4                                                         --------->MYB52(1)      ------->MYC2                                                        --------->MYB46(3)      <-------MYC2                                                        ----------->HVH21      <-------MYC3                                                        --------->DREB2C(2)      ------->MYC3                                                        --------->DEAR3(1)     --------->TGA1a                            ----------------->AG     --------->DEAR3(2)     =============MYC_MYB                       ----------------->AGL1  ------->TEIL     --------->O2                               ----------------->AGL3<---------MYB55(2)     ===========================================bZIP_DOF              --------->MYB46(3)     <---------ANAC55(2)             <----------DOF2              --------->MYB46(3)     <---------TGA1a                 <---------DAG2          --------->TOE2(3) <------NtERF2     <---------O2              --------->ETT(1) <---------------AGL15--------->ANAC58         <------     --------->ANAC55(2)       <---------DEAR3(1)            --------->TOE1(3)------>NtERF2   <------   <------------OsbHLH66    <---------MYB46(3)  --------------->AGL15--------->ANAC46         ------- ==============bZIP_DOF     <------MYB83---------->ID1    <-----------GT1--------->MYB46(3) <-------- ----->ATHB12       *TSS    <------MYB46(1)------>ZmHOX2a(1)--------->ZAT6--------->At1g77200<------- ----WOX13(1)      ------>NtERF2 <------NtERF2 <-----------------AGL1--------->ANAC58      ------>ZmHOX2a(2)   gattcacacgtgtgttgttgccaccatagttggtcggagcttttcctcttcccaaaattgtaaccctaaccacgcaccgacggcgaaaactgatcgcggg  5406100                                                                       --------->ANAC58                                                                       --------->ANAC46                                                                       --------->DEAR3(1)                                                                       --------->ANAC58                                                                     ------>NtERF2                                                                     <---------ATERF1(1)                                                     <---------ZAT2 --------->DEAR3(1)           <--- ---TOE1(2)                                          --------->At4g35610   ------>NtERF2         <--- ---TOE2(2)   --------->AtLEC2                     <--------P     ------>ZmHOX2a(1)        --------->ARR14(2) -->LBD16   <---------ANAC58             <XXXXXXXXXXXXXXXXXXXXMIR774----------->HVH21      <---------ARR14(2) -LBD16<----------DOF2                 <---------WOX13(1)     <-----------GT1         <---------TOE1(2) --ANAC46   <---------ANAC58        --------->ALFIN1 <---------At4g35610------>NtERF2------>ZmHOX2a(1)   ttttcgcatcttttacttgcaaagtcttggaaatggaagtgatggacaaatgggtagctgaatttttcctccgacgccaactaaatcctagggtttacgc  5406200                                                                            --------->ARR11(3)                                                                            <---------ARR14(2)                                                                            <---------ARR11(3)                                                                            --------->ARR14(2)                                                                           --------->GLK1(1)                                                                       --------->LBD16                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                      <---------LBD16                                     ------>NtERF2             <----------DOF2                              --------->GLK1(2)            <------------AtMYB77                             <---------ARR14(2)      --------->ANAC58 <---------ANAC58   <---------ATHB12 ------DAG2                  <---------GLK1(2)       --------->ANAC58<---------LBD16     <---------YAB1 -------DOF2  XXXXXXXXXXXXXXXXXXXX>MIR845A----------->GT1--------->MYB52(1)<---------GLK1(1)    <----   ttttccactgttatcggctctgaaaccagtagattccgacgactgtgtaaaactcaagctaactgctgttttgcgggatatctccaattccatgattcaa  5406300                                                             --------->KAN4(2)             <---------ANAC46                                                            <---------HSFC1(2)             <---------ANAC58                                                            --------->HSFB2a(1)         --------->TOE2(2)                                                            <---------KAN4(1)         --------->ARR14(2)                                                            <---------HSFB2a(1)       <---------ARR14(2)                             --------->ANAC46               --------->HSFC1(2)--------->GLK1(1)                            <---------HSFB2a(2)             --------->KAN4(1) <---------GLK1(1)                            ------>ZmHOX2a(1)              <---------KAN4(2)  <------ZmHOX2a(2)                            --------->LBD16              =============================HOX2a_HOX2a                            --------->HSFB2a(2)          <------ZmHOX2a(1)   <---------ARR11(3)                        ------>ZmHOX2a(2)         <-----------HVH21          --------->ARR11(3)                       <---------GLK1(1)    --------->HSFB2a(1)         --------->TOE1(2)  <---------ANAC58                      <---------ARR11(3)    --------->HSFC1(2)         --------->YAB1 <-----------ARR10                  <---------ANAC58          <---------HSFB2a(1)       <---------YAB1 <---------CCA1(2)  <---------ANAC46<---------ANAC58          <---------HSFC1(2)    <-------GAMYB------>ZmHOX2a(2)  <-- -----TOE2(3)    --------->ATHB12 --------->GLK1(2)      ============================HOX2a_HOX2a  <--   ggtaccgtagacgaaggaatgcttgatctcctcgaaattcttgagaagcttctgttacaggaacattcggttatcatgggatctctcaaatctgcgtatt  5406400                       <---------TOE2(2)                  --------->ANAC58       <---------ANAC46<---------TOE1(2)                                                       <-----     <---------ZAT14   <---------TOE1(3)                                                       ------     --------->At4g35610                                                                 <---------ARR14(2)     --------->ZAT14   <---------TOE2(3)                     <---------DEAR3(1)          --------->ARR14(2)     <---------ZAT2 <----------CDC5                     <----------DOF2                 <------ZmHOX2a(1)     <---------At4g35610                               <---------ANAC58         --------->ARR14(2) -------ANAC58    --------->ANAC58             <---------LBD16                  <---------ARR14(2) -------ANAC58   ------->TEIL <-----------RAV1(1)      <---------ANAC58        <------ZmHOX2a(1)   gctggactgctgtggaatgcacgcttaggtttatgtggccagtgaatgcttcggatggcttcttcggtgatgcccttgagaggatttggaggaatcggat  5406500  Previous    Next  AGI:  At1g15710.1    Description:  prephenate dehydrogenase family protein. Identical to Arogenate dehydrogenase 2, chloroplast precursor (TYRAAT2) [Arabidopsis Thaliana] (GB:Q9LMR3;GB:Q8L7Z4); similar to arogenate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G34930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59808.1); contains InterPro domain Prephenate dehydrogenase; (InterPro:IPR003099); contains InterPro domain NADP oxidoreductase, coenzyme F420-dependent; (InterPro:IPR004455); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Arogenate/prephenate dehydrogenase, plant (InterPro:IPR012070) Range:  from: 5404353    to: 5405681    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g15720.1    Description:  TRFL5 (TRF-LIKE 5); DNA binding / transcription factor. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G58340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65086.1); contains InterPro domain Telomere repeat binding factor (InterPro:IPR013127); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 5406020    to: 5407481    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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