Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ---------->DOF2                 --------------->AGL15           <---------ICU4          --------->ICU4                                                                  ------>ZmHOX2a(1)         <---------AHL20(2)                                        --------->TOE1(2) ------->GAMYB       <---------AHL20(2)   --------->ICU4 ---------->ID1 --------->YAB1          <-----------GT1---- ----------->GT1 ====================================================================================   ggtcagtatataaaaattactacaaaagtcaaaattagagtttttgtttttttttttctatgagaaaaacgagggaaatatcaataaccctcctaaatcc  5404000                                                                                  ===================                                                                                  <----------DOF2                                                                        --------->ANAC46          ========================================================================================MADS_MADS          <---------------AGL15                                         --------->ANAC58          --------------->AGL15                                         --------->ANAC58    <---------ICU4                                                      <---------ANAC55(2)   --------->ICU4                 >>>>>>>>>MYB2                         --------->ANAC55(2)  <-------TEIL --------->AHL20(2)      <---------AHL20(2)               <---------At4g35610     --------------->AGL15 --------->YAB1          --------->AHL20(2)               --------->At4g35610  <-----------GT1 -->ZmHOX2a(1)          --------->AHL20(2)         --------->ZAT14    <-----------GT1        -------- =========================MADS_MADS           --------->MYB46(3)   <---------ICU4 <---------------AGL15   taataaaaattactacaaatagccaaattaatagaaaaccaaaaaacaacaactatagtcagcatatgaaaattacgaaattttctttttaaagattcat  5404100                                         <---------ATHB51                                         --------->ICU4                                      <---------AHL20(2)                                        <----                                      --------->AHL20(2)                                       <-----                              <---------ATHB12                                               --------                   ---------->DOF2   --------->AHL20(1)                                     <--------                --------->TOE2(3)    --------->AHL20(2)                                     <--------   <------ZmHOX2a(1) ----------->GT1 <---------AHL20(1)                                     <-------- ==========MADS_MADS<---------TOE2(3)<---------AHL20(2)            ------>ZmHOX2a(1)----------->GT1 --------->AGL3 <----------DOF2--------->YAB1       --------->AHL20(2)    ---------->DOF2  <---------LBD16   atataggaagagattgaactttaaagtaacaaatcaaaataaaattatggacaaataaaaactctagtccttcagaaaaagaaatattgtaaatgcgggt  5404200                                      <---------ANAC58                                      <---------ANAC58                                      <---------ANAC46              --------->AHL20(2)              < ----P                       ------>MYB46(1)                   ------------>CBF                   <-- --GAMYB                     ------>MYB83                     --------->TOE2(3)             <-------- ->LBD16                   <---------MYB59              <---------ICU4                  <---------ANAC58 -ANAC46             --------------->AtSPL8         --------->AHL20(2)           <---------ICU4<----- -ANAC58             --------------->AtSPL3         <---------AHL20(2) <---------AHL20(2)------>ZmHOX2a(1) -ANAC58  <---------ATHB12 --------->TOE1(2)     <----------DOF2    <---------AHL20(2)  <---------ANAC58   tactaaatacaaatgaatacaaaacagtacctacaaatttccttggaacgacttttaattttgacctcaattttttatttccattatggtccttgtgttg  5404300                                                       ----------->RAV1(1)                                                      --------->O2                                                      --------->ANAC58                                  --------->At4g35610 --------->ANAC46                                --------->YAB1        --------->bZIP60(2)                               <---------ATHB12       --------->ANAC58      <-----------GT1        --------->WOX13(1)      *TSS                   <---------YAB1 ---------ANAC46           --------->WRKY18(1)   --------->ANAC46       <---------MYB52(1) -------ANAC46             ------------>CBF <-------MYC3             ------>ZmHOX2a(2)       <------- ---RAV1(1)          <---------ANAC58       ------->MYC3     <---------AHL20(2)            --------->ANAC58 ----MYB46(3)        <---------ANAC58    <---------ALFIN1   --------->AHL20(2)             --------->ANAC58   ttgtgtatttagcattttgtttttcttgggtcaatcagcatcaccacgtttaggccacgacataaaattgatccgtttatttttgaggctcgctcgcatc  5404400                  ------->GAMYB                 --------->MYB46(3)               <---------ARR14(2)               <---------ALFIN1               --------->ARR14(2)              <------NtERF2                           --------->At4g35610            --------->ZAT6              --------->ATERF1(1)                     --------->ZAT2              --------->YAB1            --------->ANAC46                          <---------At4g35610        <---------ATHB12       <----------DOF2                       <---------GLK1(1)       --------->At4g35610    ------>ZmHOX2a(1)                       <---------GLK1(2)        <---------At4g35610 --------->ZAT14 --CCA1(2) ---------->ID1   ------>ZmHOX2a(1)--------->GLK1(1) <----------DOF2 --------->WOX13(1)   ttcttcctcctttggcgcaaccgcttcttcctcttctattctcacagatttctctaagctcccaactttggagctaaaactcaatcaacactactcacaa  5404500                                                   ------>NtERF2                                                   <------NtERF2                                                   --------->LBD16                                                  --------->RAP2.3(3)                                                  --------->DEAR3(1)                                                  --------->ANAC58                                                  --------->RRTF1(3)                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->RAP2.3(2)                                                  --------->RRTF1(2)                                                  --------->RAP2.6(2)                  ------>ZmHOX2a(2)                                                 --------->RRTF1(1)               <------NtERF2                                                 --------->RAP2.3(1)              --------->LBD16                                                ------>NtERF2                     ------>NtERF2                                                <---------ATERF1(1)              --------->RAP2.6(2)                                                --------->LBD16                  --------->DEAR3(1)                                               --------->DEAR3(1)              ------>NtERF2                                              <---------LBD16                 --------->DEAR3(1)                                          <-----------ARR10                   --------->ANAC46                                          --------->ARR14(2)                 <---------LBD16                                      --------->ANAC46                <---------ICU4 <---------ARR11(3)                                      --------->ANAC58               ========================HOX2a_HOX2a                     <---------ARR14(2)--------->MYB46(3)            =========================HOX2a_HOX2a                     --------->ARR14(2)<---------MYB55(2)    <---------ALFIN1--------->MYB46(3)                ------>NtERF2         --------->ANAC58       ----------->RAV1(1)<------NtERF2  ------                --------->LBD16     <---------ALFIN1        --------->MYB46(3)<---------ALFIN1 <-----               <---------DEAR3(1)<-----------GT1--------->At4g35610  ------>ZmHOX2a(1)<------ZmHOX2a(2)              <---------LBD16 <---------CCA1(2)--------->ANAC46<---------ALFIN1<---------ATERF1(1)   tgctactccatttctctccggcgaaacccctcatttctccacccaatctccgccgcaattcacccacattcctcatttccccgccgcgatctcttcgaat  5404600                   <---------ARR14(2)                   --------->ARR14(2)                   <---------ARR11(1)                   <---------ARR11(3)                   <-----------ARR10                   --------->ARR11(3)                  <---------CCA1(2)              <------NtERF2             ------>NtERF2            --------->RAP2.3(2)            --------->RAP2.3(3)            --------->RAP2.6(2)            --------->DEAR3(1)           --------->ORA47(2)           --------->ATERF1(1)           <------NtERF2           --------->RAP2.3(1)               --------->ARR14(2)           --------->ERF1                    <---------ARR14(2)           --------->DEAR4(2)         ------>MYB83          <---------ATERF1(1)         ------>MYB46(1)              <---------At4g35610          <---------RAP2.3(1)       <---------MYB59                --------->At4g35610          ------>NtERF2            --------->ANAC58         --------->ARR14(2)          <---------RRTF1(1)  --------->ANAC46              <---------ARR14(2)          <---------ANAC58         --------->DEAR3(1)   --------->ANAC58             --------->GLK1(1)            <---------ANAC58         <---------DEAR3(1)   --------->ANAC55(2)          <---------GLK1(1)           <---------TOE1(2)         --------->ANAC46     --------->ANAC58          --------->LBD16           <---------RAP2.6(3) --->ARR14(2)--------->ORA47(1)    --------->ANAC58  --------->SPL7--------->ZAT14------>NtERF2 ----ARR14(2)--------->ABI4(1)<---------ANAC55(2)--------->LBD16------>ZmHOX2a(1)--------->DEAR3(1)   tcgagcaatcgacgccgcccaaatcttcgattacgaaacccaactcaaatccgagtaccgcaaatcctctgctctcaaaatcgccgtcttgggtttcggc  5404700                                                                                 <------NtERF2                                                                                 ------>NtERF2                                                                                 --------->LBD16                                                                                --------->RAP2.6(2)                                                                                --------->RAP2.3(2)                                                                                --------->DEAR3(1)                                                                                --------->RRTF1(2)                                                                                --------->RAP2.3(3)                                                                               --------->RRTF1(1)                                                                               <------NtERF2                                                                               --------->RAP2.3(1)                                                                              <---------ATERF1(1)                                                                              <---------RAP2.3(1)                                                                              ------>NtERF2                                                                             --------->O2                                                                             <---------O2                                                                             --------->ANAC46                                   --------->ANAC58                          --------->DEAR3(1)             ------>ZmHOX2a(1)     --------->ANAC58                          <---------DEAR3(1)         --------->ARR14(2)      <---------ALFIN1                          ------>NtERF2        -----    ------>NtERF2               <---------REM1(2)<---------ATHB12          <---------ATERF1(1)  <----  <---------RAP2.6(2)  --------->TOE2(3)    <------ZmHOX2a(2)             ----------->HVH21     <---- --------->RAP2.6(3)   --------->TOE1(3)   <---------ARR11(3)             --------->DEAR3(1)    -----   aatttcggccaattcctctccaaaaccctaattcgacacggccacgatctaatcactcactcccgctccgattactccgacgccgcaaactcaatcggag  5404800                                                                                                    =                                                                                              -------                                                                                              -------                       ------>ZmHOX2a(2)                                                     --------                       ===================================HOX2a_HOX2a                        <-------                      ====================================HOX2a_HOX2a --------->ANAC46      <------ZmHOX2a(2)        --------->HSFB2a(2)                                  --------->TOE2(3)             <---------ARR11(3) <---------CCA1(2)    <---------GLK1(1)                    ------->TEIL    --------->ANAC46--------->ARR11(3) ---->GLK1(1)         <------ZmHOX2a(2)                --------------->AtSPL8  --------->GLK1(2)    < -----At4g35610      --------->ARR11(3)            ------>ZmHOX2a(1) ------>ZmHOX2a(1) ------>ZmHOX2a(1) -----ZAT2           <---------ARR11(3)       --------->WRKY12       ==============================HOX2a_HOX2a ---->ZAT2    ------->GAMYB              ------>NtERF2------>ZmHOX2a(1) <---------REM1(2) <---------At4g35610   ctcgtttcttcgataaccctcacgatctctgtgaacaacatcccgacgttgtcctcctctgtacctcaatcctctccacagaatcagtcctcagatcatt  5404900  Previous    Next  AGI:  At1g15710.1    Description:  prephenate dehydrogenase family protein. Identical to Arogenate dehydrogenase 2, chloroplast precursor (TYRAAT2) [Arabidopsis Thaliana] (GB:Q9LMR3;GB:Q8L7Z4); similar to arogenate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G34930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59808.1); contains InterPro domain Prephenate dehydrogenase; (InterPro:IPR003099); contains InterPro domain NADP oxidoreductase, coenzyme F420-dependent; (InterPro:IPR004455); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Arogenate/prephenate dehydrogenase, plant (InterPro:IPR012070) Range:  from: 5404353    to: 5405681    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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