Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->ANAC46                                                                   --------->ANAC58                                                                   --------->ANAC58                                           ------>ZmHOX2a(1)     ---------->DOF2                                           <----------DOF2      ------->GAMYB                                   --------->ANAC58             --------->AtMYB61                 --------->ZAT14   --------->ANAC58            --------->MYB46(3)                 <---------ZAT14   --------->ANAC46           --------->ANAC58           <-----------HVH21     --------->AtMYB61            --------->ANAC58       <---------ANAC58          ----------->RAV1(1)         ------->GAMYB       <---------ANAC58          <---------ALFIN1           <---------MYB55(2)    <----------DOF2             --------->ANAC46            --------->MYB46(3)   <---------ANAC58           --------->AtMYB61     --------->ANAC58             --------->ANAC55(2)   <---------ANAC58          --------->MYB46(3)     --------->ANAC58          <---------REM1(2)  ----------------------->TaNAC69(2)      --------->TOE2(3) <---------MYB111(2) <---------LBD16    --   gagtagctttcttggtcactgcattgttgaaaccaccacacaatcctttatcgccagtaacaacaaccaaagcaactctcttcacgggtctaacaatgct  5403400                                         <---------ANAC46                                ----------->GT1                                <---------MYB46(3)                                <------MYB83                                      <---------DAG2                             --------->ARR14(2)                                   <----------DOF2                             <---------ARR14(2)  <-----------ARR10            -------->P                         <---------At4g35610     --------->GLK1(2)        --------->ARR11(3)        -            <---------ARR11(3)<---------WOX13(1) <---------ARR14(2)       <---------ARR11(3) ------->TEIL  <------ZmHOX2a(1)      --------->At4g35610     --------->ARR14(2)   ---------->DOF2   --------->RAP2.6(3) ------->At4g35610<---------YAB1<------MYB46(1) <---------GLK1(2)   ----------->HVH21 <---------YAB1<   cagaggaaaatcaatgtcttctaattgagcagattggttaattgagtagagaatctccacaagagtttcagtgaaaggtctaccctttatgactgcatct  5403500                         =========================MYC_MYB                         <---------TGA1a                         --------->TGA1a                         <---------O2                         --------->O2                      <------NtERF2                     ------>NtERF2                     <---------RAP2.6(3)                    --------->RAP2.6(2)                    --------->RAP2.3(3)                    --------->ANAC46                    --------->RAP2.3(2)                    --------->DEAR3(1)                    --------->ATERF1(2)                    <---------ATERF1(2)                   --------->RAP2.3(1)                  ------>NtERF2                                                                    --                  --------->At4g35610                                                        <-------                  <---------ATERF1(1)                                                    <---------LBD16               <---------ZAT2                                                      <---------CCA1(2)               --------->At4g35610                                               --------->ANAC46  --               --------->ZAT2                      --------->HSFB2a(2)           --------->ANAC55(2)               <---------At4g35610           <---------ARR11(3)                 --------->HSFB2a(2)<-          --------->ZAT6------>NtERF2      --------->DOF5.7(2)                  <---------HSFB2a(2)<- -------->At4g35610--------->ERF1          <---------MYB52(1)             <-------TEIL--------->ZAT6 ---------At4g35610--------->ATERF1(1)    <-------GAMYB                 <---------ARR14(2)   --------   tgagctcgacgaactctagctgccgccacgagtctcatcgcttccgttatcttctgggtattcttcacactgtcgattcgttctcgtaactctcggattc  5403600                                          --------->LBD16                                        <---------LBD16                                  --------->ANAC46                             ------>ZmHOX2a(2)    <-----------HVH21                            <------ZmHOX2a(2)  <------MYB46(1)                           <---------ARR14(2)  <------MYB83                           --------->ARR14(3)  <---------ANAC58                           --------->ARR14(2)  <---------ANAC58                           <---------ARR11(3) --------->MYB111(1)                           --------->ARR11(3) <---------MYB46(3)                           <---------ARR14(3) <---------AtMYB61            ------->GAMYB ------->ZAT2             --------->GLK1(1)   --------->MYB46(2)          <---------MYB52(2) --ARR14(2)               <---------GLK1(1) <---------MYB52(1)          <-----------GT1 ------->At4g35610     ------->GAMYB <---------GLK1(1)               --------->YAB1               --- --------ZAT2       --------->MYB52(1)<---------ARR14(2)         ----------->GT1                <---- --------At4g35610 <---------WRKY12  --------->GLK1(1)    <---------WOX13(1)           <---------TOE2(3) ->ARR14(2)        <---------WRKY38(1)--------->ARR14(2)--------->ATHB12--------->MYB52(1)<--------P   cagctcgaatttgaattgagggcaacggagatctcgacgaaatccggtttggtgtcagtgattgaaacggataataacgaactggtttcaaggtagctat  5403700                                             <----------ID1                                         ==================================HOX2a_HOX2a                           --------->ARR14(2)--------->ANAC58                               ---------               --------->ZAT2    <---------ARR14(2)                                 <---------ANAC58       <------ZmHOX2a(1)   <---------ARR14(2)--------->ANAC58               <-----------HVH21      -- ------->DOF2  --------->At4g35610       <------ZmHOX2a(1)              ------->TEIL<---------ANAC58 -----YAB1     <---------ZAT2    --------->ARR14(2)                 <------ZmHOX2a(2) <---------MYB52(1)   gaaagagtaggactctgagctcgaagccgaattcgaattcgaaggagacgacaagagccaagaggtcgagatcgaacctgtcattttcgtttgggaaaga  5403800                                                                                      --------->ICU4                                                                                      <---------YAB1                                  <---------ANAC46                                  --------->YAB1                      --------->ARR11(3)                                           <---------YAB1                      <---------ARR11(3)             ---------->DOF2             <---------ICU4 ->DOF2      *TSS   <---------TOE2(3)            ---------->DOF2                 --------->YAB1 ------->ARR11(3)   <---------TOE1(3)     --------->CCA1(2)--------->ARR11(3)   --------->ICU4   agaccctgaacttgagaggtttaagatttcatcttctcgtgaagaaatgagcaaagaaagagaacttgaggggttttctgtaattatcatgtttattagg  5403900                     ---------->DOF2                 --------------->AGL15           <---------ICU4          --------->ICU4                                                                  ------>ZmHOX2a(1)         <---------AHL20(2)                                        --------->TOE1(2) ------->GAMYB       <---------AHL20(2)   --------->ICU4 ---------->ID1 --------->YAB1          <-----------GT1---- ----------->GT1 ====================================================================================   ggtcagtatataaaaattactacaaaagtcaaaattagagtttttgtttttttttttctatgagaaaaacgagggaaatatcaataaccctcctaaatcc  5404000                                                                                  ===================                                                                                  <---------------AGL15                                                                        --------->ANAC58          --------------->AGL15                                         --------->ANAC58          <---------------AGL15                                         --------->ANAC55(2)          ========================================================================================MADS_MADS    <---------ICU4                                                      --------->ANAC46   --------->ICU4                 >>>>>>>>>MYB2                         <---------ANAC55(2)  -------- --------->AHL20(2)      <---------AHL20(2)               --------->At4g35610     <----------DOF2 --------->YAB1          --------->AHL20(2)               <---------At4g35610  <-----------GT1 -->ZmHOX2a(1)          --------->AHL20(2)         --------->ZAT14    <-----------GT1        <-------TEIL =========================MADS_MADS           --------->MYB46(3)   <---------ICU4 --------------->AGL15   taataaaaattactacaaatagccaaattaatagaaaaccaaaaaacaacaactatagtcagcatatgaaaattacgaaattttctttttaaagattcat  5404100                                         <---------ATHB51                                         --------->ICU4                                      <---------AHL20(2)                                        <----                                      --------->AHL20(2)                                       <-----                              <---------ATHB12                                               --------                   ---------->DOF2   <---------AHL20(2)                                     <--------                <----------DOF2--------->YAB1       --------->AHL20(2)                      <--------   <------ZmHOX2a(1) ----------->GT1 <---------AHL20(1)                                     <-------- ==========MADS_MADS<---------TOE2(3)--------->AHL20(2)                   ---------->DOF2  <---------LBD16 --------->AGL3 --------->TOE2(3)    --------->AHL20(1)            ------>ZmHOX2a(1)----------->GT1   atataggaagagattgaactttaaagtaacaaatcaaaataaaattatggacaaataaaaactctagtccttcagaaaaagaaatattgtaaatgcgggt  5404200                                      <---------ANAC58                                      <---------ANAC58                                      <---------ANAC46              <---------AHL20(2)              < ----P                       ------>MYB46(1)                   ------------>CBF                   <-- --GAMYB                     ------>MYB83                     --------->TOE2(3)             <-------- ->LBD16                   <---------MYB59              <---------ICU4                  <---------ANAC58 -ANAC46             --------------->AtSPL8         <---------AHL20(2)           <---------ICU4<----- -ANAC58             --------------->AtSPL3         --------->AHL20(2) <---------AHL20(2)------>ZmHOX2a(1) -ANAC58  <---------ATHB12 --------->TOE1(2)     <----------DOF2    --------->AHL20(2)  <---------ANAC58   tactaaatacaaatgaatacaaaacagtacctacaaatttccttggaacgacttttaattttgacctcaattttttatttccattatggtccttgtgttg  5404300  Previous    Next  AGI:  At1g15700.1    Description:  ATPC2 (ATP synthase gamma chain 2). Identical to ATP synthase gamma chain 2, chloroplast precursor (ATPC2) [Arabidopsis Thaliana] (GB:Q01909); similar to ATPC1 (ATP synthase gamma chain 1) [Arabidopsis thaliana] (TAIR:AT4G04640.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96549.1); similar to ATP synthase gamma chain, chloroplast precursor (GB:P05435); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) Range:  from: 5402564    to: 5403813    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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