Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->CCA1(2)      ----------->GT1               --------->ARR11(1)      --------->ANAC58                                             <               <---------ARR14(2)      --------->ANAC58                                             <               --------->ARR11(3)     --------->DAG2             --------->YAB1      --------->ALFIN1  ---------->DOF2         <------ZmHOX2a(1)        <---------ARR11(3)        --------->DAG2         < ---------AHL20(2)      ------------------------>ANAC81         <-------TEIL--------->DAG2--------->ARR14(2) ---DOF2       --------->ARR14(2)    ---------->DOF2--------->CCA1(2)      ---------->DOF2<---------ARR14(2)   atttaaaagtataaaaagatttggaataggagaaaaaaaaaaagcaaaatatagatataactgaaattcatagttgcaaaaggggaagtggagaactgga  5380800                                                                <---------AHL20(1)                                                                <---------AHL20(2)                                                                --------->AHL20(2)                                       --------->ATHB51         --------->AHL20(1)                             <------MYB83                       --------->ARR11(3)           ----------->GT1   <------MYB46(1)                    <---------ARR11(3)        --------->MYB52(1) <---------ANAC58                  --------->AHL20(2)        <---------DOF5.7(2)<---------ANAC46                  --------->YAB1       <---------WRKY38(1) <---------ANAC58               --------->YAB1       <---------WRKY12  <------MYB46(1)<------------CBF------------>CBF      ----------->HVH21  <---------MYB46(3)      <---------ATHB12   <---------DEAR3(1)    --------->MYB55(2)    --------->WOX13(1)   <---------MYB46(3)    <------MYB83  --------->ATHB12----------->RAV1(1)             <---------ICU4 ---------ANAC46       <--------P     <---------YAB1--------->ANAC58                   <---------GLK1(2) ---------ANAC58    --------->DAG2    --------->ICU4--------->AtLEC2             <------ZmHOX2a(1) ---------ANAC58<---------TOE2(3)----------->HVH21  --------->ANAC58       <---------ZAT14         --   gttcgtgggtgaacggttaagaaaggttggctggtttgacattattggtccatcatgcaacaataatatattaagagtttagaggataagaatttcaaca  5380900              <---------MYB46(3)             --------->ALFIN1          <------NtERF2         --------->LBD16        <---------ANAC46       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------LBD16      <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(s)     ----------->HVH21     --------->ALFIN1    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxx>smallRNA(se3)    <-------PIF5    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ------->PIF5   <---------TGA1a   --------->TGA1a   xxxxxxxxxxxxxxxx>smallRNA(s)   <---------ANAC58   <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(le3)                                 --------->ARR14(2)  xxxxxxxxxxxxxxx>smallRNA(le3)                                  <---------ARR14(2)  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <-------TEIL  xxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------HSFB2a(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->HSFB2a(1)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------TOE1(2)  *TSS--------->MYB52(1)                                xxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <-----------RAV1(2)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   --------->ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <------NtERF2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxx>smallRNA(fl3)                      <---------LBD16  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------LBD16      <---------ANAC58  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxx>smallRNA(s) <---------DOF5.7(2)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC46  xxxxxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  --  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    --------->ALFIN1<---------TOE2(2)--------->DOF5.7(2)      <-  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)  <----  xxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------ATHB12 --------->LBD16 ------>ZmHOX2a(1)     <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC55(2)  -- ------->ALFIN1     <---------LBD16xxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   agtggacgtgccggagtggttatcgggcatgactagaaatcatgtgggctttgcccgcgcaggttcgaatcctgccgttcacgttttttgtttttatttt  5381000                                                                                      --------->ARR14(2)                                                                            <---------WOX13(1)                                                                           <------------CBF                                                                         --------->AHL20(1)                                                                         <---------AHL20(1)                                                                         <---------AHL20(2)                                                                     --------->AHL20(2)       <---------TOE1(2)                                             <---------AHL20(2)      <------- ------->TOE1(3)             ------>ZmHOX2a(1)          <-----------GT1  --------->AHL20(2)  <------- --------DAG2    ------>ZmHOX2a(1)            --------->LBD16   <---------ARR11(3)    <---------ARR14(2) -------GT1   ---------->ID1--------->TOE2(3) ------>NtERF2     --------->ARR11(3)   <---------ARR14(1) ------->TOE2(3) <----------DOF2            <---------LBD16     <---------GLK1(2)  <---------MYB59   accttatcccagttttgtcctttttagtttcctcaatgttttcaatcccgcctatattttaccctagatttttaattaattgataccgaatcccgctttc  5381100                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  <--   <---------ICU4                                                *TSS<-----------HVH21            <--  --------->ICU4                      <----------DOF2      ------>ZmHOX2a(2)                     <---  <---------ATHB12            ====================================HOX2a_HOX2a                  ------ ---DOF2                      ------>ZmHOX2a(1)      ------>ZmHOX2a(1)                 --------->GLK1(1) --DAG2 ------------>CBF <---------At4g35610         =============HOX2a_HOX2a          <---------GLK1(1)   tgaaatcattttcaattttcaaaactcatctcctctctctctttcactctatctccttcgatctctctcggtgtcagtgaatttaactgaaatcccatcg  5381200           --------->LBD16         <---------LBD16     --------->HSFB2a(1)                                          ------>ZmHOX2a(2)     <---------HSFB2a(1)                                         <---------GLK1(1)     --------->HSFC1(2)                                          <------ZmHOX2a(2)     <---------HSFC1(2)                                          --------->GLK1(1)    <---------KAN4(2)                                           <---------ARR14(3) ------NtERF2                                                   --------->ARR14(3) ------->LBD16                                                  --------->ARR14(2) ---->NtERF2                            --------->GLK1(1)       <---------ARR14(2) --------LBD16                        <------NtERF2             <---------ARR11(3) ------>DEAR3(1)                     --------->LBD16            --------->ARR11(3)           <------- -------ANAC46                     <---------LBD16             <------ZmHOX2a(1)            <-------GAMYB -------LBD16                <---------TGA1a                <------ZmHOX2a(1)           <----------DOF2 ------LBD16<---------MYB52(1)    --------->At4g35610       =============HOX2a_HOX2a   <---------ANAC58 --->DEAR3(1)            <---------ANAC46        --------->AHL20(2)                    <---------ANAC58   ccggggaattttccggtgatttagatggctgatgtgagccggagttcaagtttatataccgaggaggatccccttcaagcttactcagggctttcgttgt  5381300                                                             --------->At4g35610                                                        =============================HOX2a_HOX2a                                                        ------>ZmHOX2a(2)                                                       ==============================HOX2a_HOX2a                                                       --------->CCA1(2)                                                       <------ZmHOX2a(2)                                                      --------->ARR11(3)                                                      <---------ARR14(3)                                                      <---------ARR11(3)                                                      <-----------ARR10                                                      --------->ARR14(3)                                                      <---------ARR14(2)                                                --------->YAB1                                     ==========================HOX2a_HOX2a                                     =========================HOX2a_HOX2a                                     ------>ZmHOX2a(1)--------->ARR14(2)                                  =============================HOX2a_HOX2a                            ===================================HOX2a_HOX2a                    -------                <---------ANAC58  ============================HOX2a_HOX2a                     <------      --------->ZAT6        ==================================HOX2a_HOX2a                    <-------     <---------ZAT18        ------>ZmHOX2a(1)  <---------ATHB12                         --------->YAB1     --------->ZAT18    <---------ARR14(2)   --------->WOX13(1)<---------ZAT18------>ZmHOX2a(1)     < ------>ZmHOX2a(1)      --------->ARR14(2) <---------YAB1    <---------At4g35610       <---------TOE2(3) --MYB52(1)     <---------ANAC58  ------>ZmHOX2a(1)   --------->AGP1          =======================   ttcctcgcacactaaaatccttgtcgaatcctcttcctccttcttatcaatcagaagatctacagcagactcatactctccttcaatctatggtaagctc  5381400                                                                   --------->LBD16                                                                  <---------ANAC46                  -    --------->At4g35610                                     <---------AHL20(1)                      <  ------>ZmHOX2a(2)                            --------->TOE2(3)  <---------ANAC55(2)               - <---------At4g35610                          ----------------->AGL1      --------->ARR14(2)        - -->ARR11(3)--------->TOE2(2)            <------MYB83 ----------->GT1     <---------ARR14(2)     <--- ---ARR11(3)--------->TOE1(3)            <------MYB46(1)    --------->AHL20(1)                   ---- --At4g35610--------->TOE1(2)           <---------AtMYB61   <---------AHL20(2)                  <---- ---------ARR11(3)                      --------->MYB59     --------->AHL20(2)                 <----- ========HOX2a_HOX2a           <---------STY1(2)------>ZmHOX2a(1)<---------LBD16            ---------   ttgatctgcttaaaccttcgattttgatgcattagctagggtttggtttcctcagtgagtaattaattacggagacgattcgagtttgtgattttgacgg  5381500                                          <----------DOF2     <---------ATHB12                 --------->LBD16 -------->ANAC55(2)                  <---------ANAC58 ---------ANAC55(2)                  <---------ANAC58 -------->ANAC58               --------->YAB1 -------->ANAC58            <-----------GT1 ------ARR14(2)            <---------AHL20(2) ----->ARR14(2)           --------->AHL20(2)                        --------->ALFIN1 ---GAMYB      <---------ARR14(2) <---------ARR14(2)            <---------HSFB2a(2) ----MYB46(3)  --------->ARR14(2) --------->ARR14(2)            --------->HSFB2a(2)                 < --->AtMYB77   --------->GLK1(2) <---------CCA1(2)           <----------DOF2                  <------   ttacgaaatcaatttcaaatctggctgatttaatcgtatccgtgctttgtttcttctcatccgcttctgggtgttcccaaatgaccaagatggatgcttt  5381600                          --------->DAG2                         ---------->DOF2                      --------->ANAC58                      --------->ANAC58                    <------ZmHOX2a(1)                   <----------ID1                                                     <-----------GT1                 <---------ICU4                              <----------DOF2       <---------YAB1                 --------->YAB1                          <---------MYB52(1)      --------->ATHB12           --------------->AGL15                     <---------At4g35610        --------->ICU4           <---------------AGL15              --------->ARR14(2)                <---------YAB1 ---------AHL20(2)--------->MYB59             <---------ARR14(2)          <---------At4g35610 ----DOF2 <-----------------AGL3  ----------->GT1    --------->At4g35610  --------->At4g35610 -------   attttttgggtttcttcaattaggacgaaaagtctgtggtaaactgcaaatacttagctgttactttgaaattttaagcagcatgattatactggataac  5381700  Previous    Next  AGI:  At1g15650.1    Description:  pre-tRNA. tRNA-Ser (anticodon: AGA) Range:  from: 5380902    to: 5380983    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g15660.1    Description:  similar to CENP-C [Arabidopsis arenosa] (GB:AAU04611.1); similar to kinetochore protein [Capsella rubella] (GB:BAF63162.1); contains domain PTHR16684 (PTHR16684); contains domain PTHR16684:SF3 (PTHR16684:SF3) Range:  from: 5381165    to: 5385249    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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