Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <------MYB83                                                                        --------->MYB46(2)                                                                       <-------TEIL                                                                     <---------PCF2                                                                    <------MYB46(1)                                                        <---------ARR14(2)                                                        --------->GLK1(2)<------MYB46(1)                                                        --------->ARR14(2)                                               --------->SPL7       <------MYB83                                              --------->MYB52(1)    <---------DEAR3(2)                                           --------->ANAC58       <---------ANAC46                                           --------->ANAC55(2)  --------->MYB55(2)         <-----------RAV1(2)               --------->ANAC55(1)  <------MYB46(1)      --------->ANAC46                     <---------ANAC55(2)  <------MYB83  --------->CCA1(2)                   --------->At4g35610       <---------MYB46(3) ----------->RAV1(2) ---------ANAC46                      <---------At4g35610      --------->ALFIN1--------->MYB46(3) -------HVH21--------->ALFIN1       <-----------RAV1(2)<---------GLK1(2)--------->MYB59  <------ZmHOX2a(1) ----ANAC46 <------ZmHOX2a(1) <-----------RAV1(2) <-----------HVH21<---------MYB46(3)------>ZmHOX2a(1) ----ANAC58<---------ZAT2  --------->ANAC46--------->ANAC46    <---------AtMYB61  ------>MYB83 ------ ----ANAC58--------->ZAT2<---------ALFIN1  --------->ANAC58    <---------DEAR3(1) ------>MYB46(1)   tgaggtatgcgccaggaggggagtcatacacctcaggctcagaagacggaacggtcagaatatgggtggtgggttcggtaaaccatcctgaggagagcaa  5317600                <---------ANAC58           ----------->HVH21          ------->PIF5          <-------MYC3          ------->MYC3          <-------MYC2          <-------PIF5          ------->MYC2         --------->bZIP60(2)               <---------At4g35610         --------->O2                      --------->At4g35610         <---------O2                    --------->DAG2         <---------TGA1a             <---------ANAC58         ==============================MYC_MYB         <---------ANAC55(2)         <---------ANAC58         <---------ANAC46          <---------ANAC46         --------->TGA1a          <-----------------------TaNAC69(2)         ==========================================bZIP_DOF                    --------->At4g35610         ==========================================bZIP_DOF               <------NtERF2       <---------ALFIN1        <-------GAMYB                              <-----------RAV1(2)     <-----------HVH21       <---------AtMYB61                           --------->At4g35610     ------>NtERF2          <------ZmHOX2a(1)                            --------->LBD16    --------->RAP2.6(2)  <---------At4g35610                            --------->RAP2.6(2)  <---------At4g35610    <------NtERF2  ---------->DOF2                 ----------->RAV1(1)       ---  --------->At4g35610    --------->At4g35610   ---------->DOF2     ---------->DOF2                <-- --->WOX13(1)   <---------ANAC58--------->ALFIN1        --------->LBD16 --------->DEAR3(1)       ----   tctaagcggccacgtgaagcttgtggcagaggaggttgtgcgtaaagctgaaagtctccgtatcagtgagaaagccgcagaagctaaatgaaacaccatc  5317700         <---------bZIP60(1)         <---------GLK1(1)         --------->bZIP60(1)         --------->TGA2(1)       --------->YAB1      <---------YAB1                               ----------->HVH21  <---------ANAC58                               ----------->GT1  <---------ANAC58                        --------->YAB1             <----------DOF2 <---------At4g35610                     <---------YAB1             <---------DAG2 ------>DOF5.7(2)                      --------->YAB1            <-----------GT1                 ---- -------MYB52(1)      --------->YAB1   <---------ICU4         --------->ALFIN1                   ---- ----->TOE2(3)       <-------TEIL      <--------HAHB4  ---------->DOF2    ---------->DOF2        ----   gttagcttatgatatcacatagattcatagttgtttttgcatcattataagatgtgacaaaggggttttgccttttaaaagtctctcagaccgaataaaa  5317800                                                                                         --------->MYB52(1)                                                                                  --------->TOE2(3)                                                                               --------->ARR11(3)                                 ------->TEIL                                  --------->AHL20(1)                            ----------->GT1                        ------->GAMYB  <----------DOF2                     <---------ANAC58                      <----------DOF2     <---------AHL20(1) ----->ANAC58        <---------ANAC46                --------->ANAC58          <---------ARR11(3) ------->GT1         <---------ANAC58                --------->ANAC46         --------->CCA1(1) ----->ANAC58  <---------YAB1    <-----------ARR10   --------->ANAC58         --------->RVE1(1)------   cgaaataatcttcaactatacttgagtgaatagtgaatctaatccaaattttgacaagaaactttacaacggtatcaaaaatatctttaaacaactgtat  5317900                                                       --------->ANAC58                                            --------->TCP23                                           --------->PCF2                                           ------>NtERF2                                           <---------PCF5     --------->TOE2(3)    ---------->DOF2                            --------->At4g35610        --------->ANAC58<<<<<<<<<<WRKY63      -------- --------->ICU4           <-----------RAV1(2) <---------HSFB2a(2)    ----------->GT1       ---------- ->TEIL             ---------->DOF2       <---------PCF2     --------->YAB1    ---------->DOF2-------   gtcataaatagttgcaagttttgaaagcccagttgaaactagaggggcccagaaattaagcaaacatcaaatagtcaaatacaaagaaagtgtgaaagtt  5318000                                                                                                  ===                                                                                                  ---                                                                                                 <---                                                                                                 ====                                                                                                -----                                    <------------------------ANAC81                             <----                                  ------>ZmHOX2a(1)                                             <----                                  --------->LBD16                                               -----                           <---------At4g35610                        <---------TOE1(2)         -----  --------->TOE1(3) --------->At4g35610                              <---------ANAC58           <----  --------->TOE2(3) <---------At4g35610                 <---------ANAC58            <---------ALFIN1 --->GT1   <---------MYB52(1)   ----------->RAV1(2)     <---------ANAC58         <---------ARR14(2) >DOF2*TSS--------->TOE1(3)--------->At4g35610          <---------ANAC46         --------->ARR14(2) ---->GT1 --------->TOE2(3)--------->ZAT14       ------>ZmHOX2a(1)   <---------ANAC58          <-----   aaaaccctaaacccttaatttgagctctctgctctcctggttttagttttcctctatttcgtgctcaattcgcttgttctccagttccactctgtaagga  5318100     <---------DAG2     <----------DOF2 <---------MYB52(1) ========================HOX2a_HOX2a --->ZmHOX2a(2) ---ZmHOX2a(2) ========================HOX2a_HOX2a ---->GLK1(2) -----ARR14(2)                                        <---------ICU4 -----AGP1                                            ------>ZmHOX2a(2)         <---------ANAC58 ---->ARR14(2)                                      <---------ARR11(3)          <---------ANAC58 ---->ARR11(3)                         <---------ANAC58              <-------TEIL -----ARR11(3)                    <----------DOF2   --------->ARR11(3)  ----------->HVH21        ---- -ZmHOX2a(1)      ------>ZmHOX2a(1)    <---------ANAC58<----------DOF2<---------AtLEC2       --------   tctgttacttttctgtaatcctctcaaaattcaatgcttttgcttactgggtctgatctttgcaagtgaaatgcatgacatttcgtccaaaatcagacct  5318200                                                                           <------NtERF2                                                                           --------->RAP2.3(1)                                                                          <---------RAP2.3(1)                                                                          <---------ATERF1(1)                                                                          <---------ORA47(2)                                                                          ------>NtERF2                                                                          <---------DEAR4(2)                                                                          <---------ERF1                                                                         --------->ATERF1(2)                                                                         <---------RAP2.3(3)                                                                         <---------ATERF1(2)                                                                         <---------RAP2.3(2)                                                                         <---------DEAR3(1)                                                                         --------->DEAR3(1)                                                                        --------->RAP2.3(1)                                                                        --------->ATERF1(1)                                                                        <---------ABI4(1)                                                                        <------NtERF2                                                                       <---------RAP2.3(1)                                                                       <---------ERF1                                                                       <---------RRTF1(1)                                                                       <---------ATERF1(1)                                                                       ------>NtERF2                                                                       <---------ORA47(2)                                                                       --------->LBD16                                                                      <---------RAP2.3(2)                                                                      <---------ANAC46                                                                      <---------RRTF1(2)                                                                      <---------DREB2C(2)                                                                      <---------RAP2.3(3)                                                                      <---------ATERF1(2)                                                                      --------->ATERF1(2)                               <---------ANAC58                <------ZmHOX2a(2)                               <---------ANAC46                ==================================HOX2a_HOX2a                               <---------ANAC58                --------->ZAT14                       --------->GLK1(2)                       <---------ZAT14                      ------>MYB83                            --------->ARR14(2)                    <---------MYB59                          --------->At4g35610       --------->LBD16                    <---------MYB46(2)                 ---------->DOF2<---------RAP2.6(2)                   --------->ANAC55(2)           <----------DOF2      <---------DEAR3(1)                   ----------------->AG         ------>ZmHOX2a(2)     --------->DEAR3(1)      ----------->GT1 ------>MYB46(1)           <---------ICU4<---------ARR14(2)      <---------TOE1(1) ----->AtLEC2    <-----------GT1              --------->ARR11(3)     --------->ATERF1(1)  <------ZmHOX2a(1) ->ARR11(3) <----------DOF2 <---------MYB52(1)<---------ARR11(3)     <---------LBD16  <---------TOE2(1)   tgcaaaaatggtttcttttttacctaatctgtttcgtctgtgtgttttgatctttacaaaagcagatcagtgccggcggcgatattgtccgaggataaaa  5318300                              --------->MYB52(2)                              <------MYB83                              <---------MYB46(3)                              <------MYB46(1)                             <---------AtMYB61                            <--------P                           <-------GAMYB                          <---------MYB46(3)                          --------->MYB55(2)                         <---------AtMYB61                                                          -                      <---------ANAC58                                                              <                      <---------ANAC58                                                              -                      <---------ANAC46                                                              <                     <---------LBD16                                         <----------DOF2        =              <---------TOE1(2)                                              <---------DAG2         -              <---------TOE2(3)                                           <---------AHL20(2)        <              <---------TOE2(2)      ------>ZmHOX2a(1)              <----------DOF2                 -        <----------DOF2--------->LBD16                 <-----------GT1    <-----------GT1---------->ID1   catgtttgctctttccaaggttttgcggaggttggtttcctcgattatacacttgttataccatttgattctttatttacttttttcatttgtcttctct  5318400                                                                                --------->YAB1                                                                                <---------AHL20(1)                                                                                --------->AHL20(2)                  --------->MYB52(1)                                            <--------ATHB1                  <-----------GT1                                               <---------ICU4             --------->AHL20(2)                                                 <---------AHL20(2)             <---------AHL20(2)                                              --------->YAB1             <---------YAB1                                                <---------YAB1 --------------->AGL15                                                   --------->YAB1 <---------------AGL15                                                   <--------HAHB4 <---------HSFB2a(2) ---------------->AG                                                    <---------YAB1  --------->HSFB2a(2) -----------------AG--------->ZAT6                                    <---------------AGL15 ---------------->AGL1                                                --------------->AGL15 -----------------AGL3                                            <----------DOF2  <---------AHL20(2) =====================================================================================MADS_MADS ---------------->AGL3             --------->TOE1(2)            --------->ZAT2 --------->ICU4 -----------------AGL1         --------->YAB1                   --------->At4g35610<---------ICU4 <-- ---------------->AGL2  --------->ZAT14                         <---------At4g35610--------->AHL20(2)   atcccaaaattggatataattaacagttctctagcatcatgcgagattgaaatgcttcagtctcacagctttctattattaataattttttcagaagtca  5318500  Previous    Next  AGI:  At1g15470.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46029.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 5315502    to: 5317858    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g15480.1    Description:  DNA binding. similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.1); similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.2); similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO63034.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5318006    to: 5320589    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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