Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->AHL20(2)                                             --------->YAB1                                     -----                                     --------->ICU4                                            ------           <---------ANAC46          <---------YAB1                                          --------           <---------ANAC58        --------->YAB1                                        --------->ARR14(2)           <---------ANAC58        <---------ICU4--------->ANAC46                  <------ZmHOX2a(1)       <---------GLK1(1)         --------->GLK1(2)      <-----------GT1      --------->ATHB12<-------       --------->GLK1(1)  ---------->DOF2 --------->WOX13(1)         <---------HSFB2a(2) <---------ARR14(2) ------>ZmHOX2a(1)     --------------->AGL15<---------ATHB51         --------->HSFB2a(2) ------->TEIL   atcctacagagttccttgaagatagcctgaaagagaatcatgatcaattatacagaattaacccctctgttttggaaattgattaggaatgaatctgcgg  5271700                                                                <------ZmHOX2a(2)                                       --------->At4g35610     --------->ARR11(3)                                       <---------At4g35610     --------->ARR14(2)                                      <---------ATERF1(1)      <---------ARR11(3)                             <-------GAMYB                     <---------ARR14(2)                            =====================RAV          ------->GAMYB                            <-----------RAV1(1)             <---------TOE2(3)                            --------->MYB52(2)              <---------TOE1(3)                            --------->MYB55(2)             --------->MYB52(1)                            <---------MYB46(3)   ------>ZmHOX2a(2)                          <-------GAMYB<---------ZAT2      <---------DOF5.7(2)                          <---------MYB52(1)   <---------ARR11(3)                        <---------ANAC58       --------->ARR11(3) ---->At5g28300     <-----------RAV1(2)--------->ZAT2 <---------TOE2(3)                     --------- ----->GT1          ====================RAV    <---------ARR14(2)       <---------YAB1      <-------- ->At4g35610     --------->YAB1      <-----------RAV1(2) --------->DOF5.7(2)           <----------DOF2 --LBD16  --------->ZAT2<---------ANAC58       --------->ARR14(2)------>ZmHOX2a(2)  ------->TEIL   taaaactaaacctgctcgatgatcaggcgtttgttgtggccagctgctagatcgtcgaggttaacgatcttcttaatattggtctgcatcttttccacaa  5271800                                                             <---------DAG2                        <-        <---------HSFC1(2)                             --------->YAB1                          <-----        --------->HSFC1(2)                          --------->WOX13(1)                       <-------  ---------->DOF2      ---------->DOF2            --------->ICU4        <---------YAB1       -------- >HSFB2a(2) --------->TOE2(1)                     <---------ATHB12      <---------ATHB51  --------->At4g35610 -HSFB2a(2) --------->TOE1(1)                <---------TOE2(3)<----------DOF2             <---------At4g35610   ggccaaaagaaacatcggactggagcaaagcgcgagtaatctcgtttaagaaatcattcaaaaccttttcatcgattattgtcacattgttcatctgctg  5271900                            --------->LBD16                           --------->ANAC46                           --------->ANAC58                           --------->DEAR3(1)                         <---------ATERF1(1)                       <---------At4g35610                       --------->At4g35610                       --------->GLK1(1)                       <---------GLK1(1)                       <---------ZAT2                       --------->ZAT2                   <------NtERF2                   <----------CDC5                   --------->ATERF1(1)                 --------->RAP2.6(2)                 <---------ATERF1(2)                 <---------DEAR3(1)                 --------->RAP2.3(2)                 --------->DEAR3(1)                --------->ATERF1(1)                --------->SPL7                --------->DEAR3(2)               ------>NtERF2------>NtERF2               <---------ATERF1(1)               --------->ATERF1(1)              <---------ATERF1(1)         <---------GLK1(1)<---------LBD16       <-------GAMYB  ----------->ARR10     --------->LBD16 ------>NtERF2    <---------ANAC46--------->DEAR3(1)    <------NtERF2--------->ATERF1(2)   ------>NtERF2--------->RAP2.3(1)   <---------LBD16<---------ATERF1(1)  <---------ANAC58<---------At4g35610                             ------->GAMYB  <---------ANAC58--------->At4g35610   <---------AHL20(2)       --------->MYB46(3)  <---------ANAC46<------NtERF2------>NtERF2                     <---------MYB52(2) ----------RAV1(1)------>NtERF2----------->RAV1(1) <---------At4g35610    <---------TOE2(3) -----DOF2    --------->LBD16 --------->DEAR3(1)   --------->At4g35610    --------->ANAC58 --At4g35610 <---------RAP2.6(2) <---------ALFIN1 <-----------RAV1(1)     --------->ANAC58         <- ->At4g35610<---------LBD16--------->ANAC58     <---------At4g35610  --------->YAB1          <-------   tatggcgcgggttatccggccgccgagctccgccaacaccatttttttttatctgctgtgcgattcaacaaacatcaaggaattagggctcaattctttt  5272000           ================================RAV                                  --------->ANAC46           <-----------RAV1(1)                                                  --------->ANAC58       ------>ZmHOX2a(2)                                                      <---------ALFIN1      <------ZmHOX2a(2)                                                    <---------------AtSPL3      <---------RVE1(1)                                                  --------->ALFIN1     --------->ARR11(3)                                             <---------ANAC46     <---------ARR14(3)              <------NtERF2                  --------->ANAC55(2)     <---------ARR11(3)             --------->LBD16                 <---------ANAC55(1)     --------->ARR14(2)            <---------ANAC46                 <---------ANAC55(2)     <---------ARR14(2)           <---------LBD16                --------->ARR14(2)              <---     --------->ARR14(3)        <-----------RAV1(2)               <---------ARR14(2)            ------ ---------->DOF2          --------->ICU4             *TSS      <---------MYB46(3)  <---------WRKY12-- --------YAB1       <---------WOX13(1)          <-------MYC3  <---------TOE2(2) --------->bZIP60(2)-- ---DOF2<----------DOF2   <---------YAB1        ------->MYC3  <---------TOE1(2) --------->ANAC58-----   tatcaaagatcttttgtgggagattgacatgattcaggcgggagagaacatgtggcattaatcggaggttacgagttggagcacgtcaacttaaatggac  5272100    ----------->GT1                                         --------->CCA1(2) ------MYB59                                 <-----------------AGL1                             ----- ->TEIL                      ----------->GT1 <---------TOE1(3)                                  <---- -------->DOF2  ------------>CBF             <-----------------AG          <---------GLK1(2)   ------ ------->MYB52(1)          --------->ANAC55(2)             --------->AHL20(1)             <---------At4g35610 ------------>AGL1     <-----------HVH21     <---------TOE2(3)   ------->TEIL  <----------DOF2 <-----   ctaaaggtgtaaaacaggcccaatgggtcacatgttaatagttctctaacgtttttggaaatatatgaaactctacatattctttcatatacaactgatg  5272200                    <---------ZAT6                  --------->ANAC55(2)                                                             ---                  <---------ANAC55(1)                                                             ---                  <---------ANAC55(2)                                       <---------YAB1        <--      --------->ARR14(2)                                                   --------->ARR11(3)     <--      <---------ARR14(2)                                                   <---------AHL20(1)   <---- <-----------------AGL1                                                    <---------ARR11(3)   ----- ---->YAB1        <---------ANAC46                               <---------ICU4                 ----- -----ICU4 <---------AtLEC2                                      --------->ATHB12             ------- --->ICU4  <---------ANAC58                                      --------->YAB1      <---------YAB1 ----YAB1  <---------ANAC58                                     <---------YAB1<----------DOF2 <------   atgacccaaatttgcatgttaagtgttaagaagagcctgaaaaacttgtatacaagaattggttttatcattgtcaatatctttgttatgacttacaacg  5272300                                                                                                    <                                                                                                  ---                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                <----       --------->YAB1                                                                           <----  <-------TEIL                                                                                 ------ ---->TEIL                                                                                     <----- ------>SPL7                                                                                   <----- -------TOE1(2)          <---------DEAR3(1)       ------>ZmHOX2a(1)                            ------ -----TEIL              <---------ORA47(1)  <-------TEIL                                --------->ZAT2 -----SPL7  <---------ATHB12     --------->At4g35610                                    <---------ZAT2 ---->TOE1(2)          <------ZmHOX2a(1)    ------->TEIL         <---------MYB46(3)    --------->ANAC58 ---->TOE2(2)  ------->TEIL--------->At5g28300   --------->TOE2(3)                     --------->ANAC58 -------->AtSPL8      ----------->HVH21 <---------------AtSPL8  ===================================== ---------AtSPL3   --------->LBD16      --------------->AtSPL8  <--------P             --------->ANAC46   tacgtacaatagcaatgaatccagaggacggtgatagctaaacatgtacatcctaaacatgtatgggttgatgaagaggcattagttccaagcaggcaga  5272400   <-----------HVH21  --------->ANAC46  --------->bZIP60(2)  ==================================================bZIP_DOF  --------->TGA1a  --------->O2 ---------ALFIN1 --->ZmHOX2a(2) ---ZmHOX2a(2) ---->ARR11(3)                                   <---------HSFB2a(2) ---->ARR14(2)                               <---------ANAC58                    <-----------HVH21 <- -----ARR11(3)                               <---------ANAC58                 ------>ZmHOX2a(2)    -- -----ARR14(2)                           <----------DOF2                  ------>ZmHOX2a(1)        -- --->GLK1(1)                        <---------ANAC58                    ----------->RAV1(2)    ------ ----GLK1(1)                  --------->TOE1(2)  --------->HSFB2a(2)    ------>ZmHOX2a(2)      <----- ----At4g35610              ------->TEIL<---------ANAC58              <---------ARR14(2) --------->ALFIN1 --->At4g35610           <---------YAB1 <---------ANAC58              --------->ARR11(3) ----------->HVH21 ===========MYC_MYB <-----------GT1 <---------ANAC58---------->DOF2   <---------ARR11(3) <---------REM1(1)   tcccacatcacagcatttagttttactatgaaactgggacttgctttgcttctacaaagctctcaactagatgatcctgatcccttcagaggtgaaggaa  5272500        <---------ARR11(3)        --------->ARR11(3)   ----------->GT1                                <------NtERF2                         <---------ARR14(2) <---------ANAC46                               <---------ANAC58                        ------->TEIL --------ZAT2                                   <---------ANAC58                        --------->ARR14(2) ------->At4g35610                       <---------ANAC46                              <---------CCA1(2) ------->ZAT2              --------->At4g35610  <---------RAP2.6(2)                <---------At4g35610 --->ARR14(2)              <---------At4g35610  <---------ANAC46         --------->AtMYB61   <------- ----ARR14(2)           <---------At4g35610--------->ALFIN1  --------->AtLEC2      --------->At4g35610   ctgctgggtaaatctttcttagcttcttctgctctccaaactggtgtatggcgtcttgaatccctgcaaatgcgaccacaaactcggctgtatccgtttg  5272600  Previous    Next  AGI:  At1g15310.1    Description:  ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A); 7S RNA binding / GTP binding / mRNA binding. Identical to Signal recognition particle 54 kDa protein 1 (SRP-54A) [Arabidopsis Thaliana] (GB:P37106); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.2); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to unknown [Populus trichocarpa] (GB:ABK95819.1); similar to unnamed pr Range:  from: 5269014    to: 5272053    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15320.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO62706.1) Range:  from: 5272251    to: 5274008    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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