Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(1)                  <-----------RAV1(1)                                <---   <---------ANAC58                           <---------MYB46(3)                --------->MYB52(1)   <---------ANAC58                        --------->ARR14(2)     <---------ANAC58               ----  <------NtERF2                            <---------ARR14(2)     <---------ANAC46               ---- <---------MYB46(3)                       <------ZmHOX2a(1)       <---------ANAC58    <---------DEAR3(2) -------->ALFIN1                      ---------->DOF2        <---------ANAC46--------->ANAC58  ------ ------TOE1(3)                     --------->ANAC58     <---------AtLEC2     --------->ANAC58 ------- ------TOE2(3)       xxxxxxxxxxxxxxxx>smallRNA(s)      --------->ZAT14       --------->ANAC46-------- ----->DAG2--------->LBD16         --------->ANAC58    <---------ZAT14<---------CCA1(2)     ---------   aggtggctagttcctgaacacttattttcagacatgtaggcaaaggatttgttgcagtgcatggggggtcgtgtatcacaaacaacgtcggtatcaacca  5268200 ----------->HVH21 ------ZAT2 ----->ZAT2                                                --------->TOE2(3) ----->At4g35610                                      --------->YAB1      ----------->HVH21      <--- ->GAMYB                             --------->ANAC58 --------->AHL20(2)<----------DOF2        ------ -->MYB46(3)                         --------->ANAC58<---------ATHB51  <---------ANAC58        <----- >P   <------ZmHOX2a(1) ------>ZmHOX2a(1)        <---------ATHB12  <---------MYB52(1)----------->GT1 >WOX13(1)  <---------ZAT6         ---------->DOF2 --------->WOX13(1)  <---------ANAC58  --------->YAB1   gctctgaaggattagtgtccatagtcctgaaaacagagaaagcaacgtcgaatcaattatacatcaaacgtttgctttgacacaatatcgataatactca  5268300                                                     ---------->DOF2                                                <---------ETT(1)                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                              --------->CCA1(2)                                             --------->ARR11(3)                                             <---------ARR11(3)                                             --------->AGP1                                             --------->ARR14(2)                                             <---------ARR14(2)                             <--------     --------->MYB52(1)                     --------->GLK1(1)                          --------->LBD16 ------YAB1                                 <---------GLK1(1)                    <---------ARR11(3)-- --->YAB1       --------->TOE1(2)      ---------->DOF2           --------->O2    --------->ARR11(3)-- ----ICU4    --------->MYB52(1)  --------->ANAC46----------->RAV1(1)            <---------GLK1(2)  --   tgagagcaaacgaagaaacgaaggaagaagagaccagggaacaaagagatccgacaaaagagaagacacatcgcagaacacaaaatctccagagaataaa  5268400                                                                                               ------      ---------->DOF2                             --------->GLK1(2)                            ------ -KAN4(2)                             ---------->DOF2       <---------ANAC58              --------->ANAC58 ------->ANAC58                    --------->ANAC46         >>>>>>>>CAMTA3                --------->ANAC58 ------->ANAC58                    --------->ANAC58         <---------ANAC46         --------->ANAC46 ------->ANAC46  ---------->DOF2   --------->ANAC58         <---------ANAC58      <-----------GT1   cacgaaaacaaagaagagagaaagttgaaactcacacacacaaaggaagaagactctgaaacgcgtgtgtaatgggctctgatttcaccgaaacgctaag  5268500                                                    <------NtERF2                                                   <---------DEAR3(2)                                                  <---------DEAR3(1)                                                  --------->DEAR3(1)                                                 <---------MYB52(1)                                                 --------->ATERF1(1)                             *TSS                                                ------>NtERF2                              --------->ANAC58                                                <---------SPL7                             --------->ANAC55(1)                                                <-----------HVH21                          <---------ANAC55(2)                                               --------->DEAR3(1)                          --------->ANAC55(2)                                     ---------->ID1------>NtERF2                           --------->ANAC58                                  <----------DOF2<------NtERF2                         <------ZmHOX2a(1)                       <---------TOE1(3)<---------DAG2  <----------DOF2             <---------ICU4 --->ANAC58            <---------TOE2(3)<----------DOF2 <---------DAG2              --------->YAB1 --->ANAC58 <----------DOF2       <---------DAG2<---------ATERF1(1)             <---------AHL20(2)   caaatcgaattggactttcagttttagggttttgagcttttccttttcgccgtcggcccttttctgtttctctctcacttatataatcaggacaagtaat  5268600                  ------------>CBF                ------->GAMYB               --------->MYB46(3)               <---------MYB52(2)           <-------TEIL--------->AHL20(2)           --------->SPL7        --------->ANAC58        --------->ANAC58  ---------->DOF2   ------>MYB83        --------->ANAC55(2)                 -------->P                 ---------->DOF2        <---------ANAC55(2)                 ------>MYB46(1)   ----------->GT1        <----------ID1       --------------->AtSPL3    ---------->DOF2         --------->AHL20(2)        ---------->DOF2 <-   agactcgctcacgtacaacaaacaatataaaagaaaaaaggaaccctaccaaaaacaaaaaaaatggaaatacaaaagaaaatgggaaagacaaattttg  5268700                                  <---------ICU4                               <-----------GT1                              <---------YAB1                              <---------AHL20(2)                          <---------ARR11(3)                    <---------GLK1(2)                                     --------->ARR11(3)           ------>MYB46(1)   <---------AHL20(2)                         <---------AHL20(2)           ------>MYB83   <---------AHL20(2)                           --------->AHL20(2)      <-----         <---------MYB59  <---------AHL20(1)  ---------->DOF2  <---------MYB59               --------         <---------MYB46(2)<---------YAB1 --------->ANAC58   --------->ARR11(3)             ---------   --------->WOX13(1)   <---------YAB1    --------->ANAC58   <---------ARR11(3)           --------->TOE2(3) ----------GT1 --------->MYB52(1)<---------YAB1              <-----------ARR10          <---------TOE2(3)   ttaaccaattaccaaacaaacagattattatttttattattcccaagtaaaagacataaacaatatctaactattaaatcttatcccattaacatttatt  5268800                     <---------AHL20(2)                   <---------AHL20(2)                 --------->AHL20(2)                 <---------AHL20(2)               <---------AHL20(2)               --------->AHL20(2)             <---------AHL20(2)        <---------YAB1             --------->AHL20(2)    <---------YAB1           --------->AHL20(2)    --------->AHL20(2)     --------->AHL20(2)         <---------YAB1 <---------TOE2(3) --------->AHL20(2) <---------TOE2(3)                                  <---------AHL20(2) ----YAB1--------->AHL20(2)   <--------HAHB4                                     <---------AHL20(2) ->YAB1  <---------AHL20(2)   --------->YAB1    <---------YAB1        --------->TOE2(3)  --------->AHL20(2) >AHL20(2) <---------AHL20(2)<---------YAB1  <---------YAB1 ------->TEIL    <---------AHL20(2)   attaagtttatatatatatatatatatatgtattattatttatgtttattattctaaatacgaacattgattccataattcatttttttttttaatttgt  5268900                                                    <---------ANAC58               --------->AHL20(2)                                                    <---------ANAC58       --------->AHL20(2)                                                    --------->ANAC55(2)    <---------AHL20(1)                                                    <---------ANAC46       <---------AHL20(2)                                               <---------ANAC58            --------->AHL20(1)                                               <---------ANAC58         <---------ICU4                                          --------->ATHB51             <---------ATHB51                                          --------->ATHB12             <---------AHL20(2)                                         <---------YAB1                --------->AHL20(2)                                        <---------AHL20(1)            <---------AHL20(1)                                        <---------AHL20(2)            --------->AHL20(2)                                        --------->AHL20(2) --------->AHL20(2)  <---------AHL20(2)                                       --------->YAB1      <---------AHL20(2) <---------WOX13(1)                                      <---------YAB1<---------ANAC55(2)--------->ICU4              --   ttcaatactctactctatcgaattttgaaaattttggaccattataattgggtttcgtgattttattgacaaaataattaattgattatatgttttttga  5269000                                                                                             --------                                                                                             --------                                                                                             <-------                        <---------YAB1                                                       <-------                      <---------AHL20(2)                                             <---------YAB1                      --------->AHL20(2)                                            --------->AHL20(2)                     <---------AHL20(2)            --------->YAB1                ----------->GT1                  <---------YAB1                   ----------->GT1              ----------->GT1                 --------->AHL20(2)            <---------YAB1           <---------MYB52(1)   <-------   --------->YAB1<---------AHL20(2)         --------->GLK1(2)         <---------MYB46(3) --------->YAB1 ------->YAB1   --------->AHL20(2)    --------->YAB1      <-----------GT1   <------ZmHOX2a(1)--------   atcaaaaataactaaaaattaaaattattttttaaaacaattttaaaatctgatagtaattaagcattttagtcgttaggatgtgttaaaattataaggt  5269100  Previous    Next  AGI:  At1g15300.1    Description:  transposable element gene. hAT-like transposase family (hobo/Ac/Tam3), has a 5.1e-59 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays) Range:  from: 5265721    to: 5268597    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15310.1    Description:  ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A); 7S RNA binding / GTP binding / mRNA binding. Identical to Signal recognition particle 54 kDa protein 1 (SRP-54A) [Arabidopsis Thaliana] (GB:P37106); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.2); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to unknown [Populus trichocarpa] (GB:ABK95819.1); similar to unnamed pr Range:  from: 5269014    to: 5272053    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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