Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               ========                                                                                    <---------DAG2                                                                      <----------DOF2<----------DOF2     <---------------AGL15     <-----------HVH21                    <---------At4g35610      ========     --------------->AGL15    <---------ZAT6                        --------->At4g35610   ------>ZmHOX2a(1) ------>GLK1(2)  ---------->DOF2        ---------->ID1      <----------DOF2<---------TOE2(3) ------>ZmHOX2a(1) >RAV1(1) ---------->DOF2   --------->ZAT14               --------->At4g35610 --------->ARR14(2)   aatccaactcttaaaagaaaaaagaaacagtagagtcacctcgtcgtattccttcttatcagctttaggctgcttcaaaggtttcgcctttcctcctgtt  5251900                          <---------DOF5.7(2)                        --------->DOF5.7(2)                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                                                              <                    --------->ARR11(3)                                                              <                    <---------ARR11(3)                <---------WRKY12                              <                    <---------ARR14(2)                <---------WRKY38(1)                       <----                    --------->ARR14(2)             <---------ANAC46     <---------CCA1(2)       <----                <---------At4g35610         <----------DOF2        ------>MYB83               -------                --------->At4g35610         <---------DAG2         ------>MYB46(1)         <---------MYB52(2) ============================HOX2a_HOX2a <-----------GT1         --------->MYB46(3)   --------->ANAC46 ===========================HOX2a_HOX2a <---------ATHB12     --------->MYB46(3)       ------->GAMYB <   taaaaccaaaataagatgagcagatcgtaaacgatgtctctaatcactttattcggtgaacgaatcaccaactcaaatctctgtataacagcaacgtacc  5252000                      <---------MYB52(1)                     <-------GAMYB                    --------->MYB52(2)                    <---------MYB46(3)           <---------YAB1                                                                           < ---------ANAC58   <-------TEIL                                                                   --- ---------ANAC58<---------MYB46(3)                                <---------At4g35610            <--- ---------AtLEC2<------MYB46(1)                              --------->DAG2               ------->TEIL -----ANAC58  <---------WOX13(1)                            ---------->DOF2               <---------ARR11(1) -----ANAC58--------->ATHB12                          <---------LBD16 ----------->ARR10  <---------ARR14(1) >TEIL     --------->ICU4                   <---------At4g35610   --------->At4g35610    <---------CCA1(2) ---------ANAC46<------MYB83                --------->At4g35610   --------->ZAT2         <---------GLK1(2)   ttgcttggaagacatgattggttcgttgagctagggttcgatgttgagctcaaaattggggaaaaagtagctgagagttgcagacggtatcgaatctctc  5252100                       --------->YAB1                <---------AHL20(2)                 <---------ICU4            ------->GAMYB      <---------SPL7  <---------YAB1      --------->ANAC58 ---------WOX13(1)<-----------TBP         --------->ANAC58       ---------->DOF2 ------>ATHB12  *TSS--------->YAB1        --------->ANAC46     ----------->HVH21 ------YAB1  <-------TEIL            <-----------GT1--------->AHL20(2)             ---------->DOF2  <   tgattggggctacggttcatatttataatgagttcgtagtaacaacgcaacctattaaatgggctctgaaagtgtatggcccattaaaaggcctacaaat  5252200                                                                --------->ANAC46                    <-----------------AGL3                      --------->ANAC58                    --------->TOE2(3)                           --------->ANAC58                  <---------ARR11(3)            ----------->GT1--------->LBD16            <---------MYB52(1)          <-----------HVH21 ---------->DOF2                   <--------           <-------GAMYB        <---------WRKY38(1)      <---------AHL20(2)                 ---------          ----------->GT1       <---------WRKY12<---------MYB46(3)                     --------->AHL20(2)       --------->PCF5          --------->WRKY18(1)<---------MYB52(1)                   <---------AHL20(2)       --------->PCF2<----------DOF2--------->TOE1(2)   --------->AHL20(2)    --------->AHL20(2) ----------DOF2   --------->ARR11(3)--------->TOE2(2)<---------YAB1           <---------AHL20(2)   ttctttttgggcccgttaaatacctttatttgggtcaacctaggtcacagtcgttatatttaatgcgcgaaataacaaaataaaatcgattaattaacag  5252300                                                                           ----------->GT1        --------->ALFIN1                                         <---------At4g35610     --------->DAG2                      ---------->DOF2         --------->ZAT2   ---------->DOF2                    --------->LBD16            <---------ZAT2      --------->CCA1(2) ---GT1--------->ARR11(3)        <---------GLK1(1)     --------->ANAC58<---------ARR14(2)       <---- >MYB52(1)*TSS            --------->ATHB12             --------->ANAC58--------->ARR14(2)--------->ANAC46   ttaacaaaaggtctggctccattcgatttcattggaaacccccaaaatcgctgaagaacgcctctcgagctcagatagggtttataggtatgcgcgagct  5252400                              <---------WRKY18(1)                            <----------DOF2                        <---------ZAT18                                                      <-------                   --------->SPL7                                                   <-----------GT1 ------DOF2        <---------LBD16           <---------GLK1(1) <<<<<<<<<TBF1      <---------GLK1(1)   ttcttctacatagtcgattagtacggagcgcttgagcgactctttcgatttctcaattgaatttcttcttcatctaggttttggatttacgagtaccact  5252500                                                                            --------->MYB46(3)                                            --------->At4g35610            ------->TEIL                                            <---------At4g35610           <---------ARR14(2)                                      ----------->RAV1(2)                 --------->ARR14(2)                                      --------->At4g35610             --------->ZAT2             <---                <---------HSFC1(1)    <---------At4g35610             --------->At4g35610     <------ZmHOX2a(1)                --------->HSFC1(1)------>NtERF2                  --------->LBD16            ---------         <---------TOE2(3)       <---------ETT(2)               --------->LBD16           <---------O2      <-----------GT1  <---------GLK1(2)----------->HVH21     =============HOX2a_HOX2a    <---------ANAC46 <----------DOF2--------->HSFB2a(2) --------->REM1(1)         ------>ZmHOX2a(2)         ------>NtERF2 <---------DAG2 <---------HSFB2a(2)<------NtERF2    <---------YAB1    <---------At4g35610<------NtERF2 --ALFIN1<---------TOE1(3)       --------->ETT(2)---------->TaMYB80 <------ZmHOX2a(1)  ----------->HVH21   ctcctttttttcaggtttctagagagaatttcatggcgacatctgaagcggaatatgagagtgatcccgaggagctgaaccgctccttggcgacgaggag  5252600                           <---------YAB1                                        ------>MYB46(1) <---                           --------->ICU4                           <--------P <---------MYB59   <---                         --------->YAB1                             <---------WOX13(1)          -----                        <---------YAB1                             <-------GAMYB <---------ARR14(2)                        --------->ICU4                            <---------MYB46(3)            -----                      --------->YAB1 <-------GAMYB               --------->ALFIN1------>MYB83   <---- ---ZmHOX2a(1) <---------YAB1 <---------YAB1   ----------->GT1   <---------AtMYB61   --------->At4g35610 >ALFIN1    ----------->TGA1--------->YAB1   ----------->GT1  <---------DEAR3(1) --------->ARR14(2)   gagagaagcgagtgatgacgatagtgatgatgatgatgctgttagagatgtgaaaaatcagagggctgtggttgattctgacctatctgatgaagaagtt  5252700                                                                                            <--------               <---------ICU4                                                               ---------     --------->ZAT14                                                            --------->ICU4-------     <---------ZAT14                                                  <------ZmHOX2a(1)  <---------AtMYB61  <---------ZAT6 ----------->TGA1                                <---------ANAC46-------->HAHB4  <--- ---MYB46(1)  --------->ICU4                              ---------->DOF2       <---------YAB1<------ ---MYB83   --------->YAB1                   <------ZmHOX2a(1)   --------->ALFIN1--------->YAB1<----- ---->MYB59<---------YAB1         <---------ARR14(2)     <------ZmHOX2a(1)    --------->YAB1<-------- ---->MYB111(1)--------->YAB1    <------ZmHOX2a(1)    <------ZmHOX2a(1)<---------ARR14(2)--------->ALFIN1 -----------AtSPL8        --------->ALFIN1 <---------TOE2(3)  --------->ALFIN1<---------ICU4<--------   ggtactgtgaagtatgataatgacgaagatggggaggatagttatgaggatgatgaggaggaaagtggtggaggaatcgataatgataagagtggtgtgg  5252800  Previous    Next  AGI:  At1g15270.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16040.1); similar to hypothetical protein [Plantago major] (GB:CAH59409.1); contains InterPro domain Translation machinery associated TMA7 (InterPro:IPR015157) Range:  from: 5250645    to: 5252116    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15280.1    Description:  glycine-rich protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80000.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80000.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN71825.1) Range:  from: 5252310    to: 5256748    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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