Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------At4g35610                             --------->ZAT14                             <---------ZAT14                             --------->At4g35610                           <------NtERF2            <---------ZAT18                           --------->ATERF1(1)--------->YAB1                          --------->At4g35610===========================HOX2a_HOX2a                         <---------DEAR3(1)  <------ZmHOX2a(2)           <-----------GT1                  --------->ANAC58           <---------YAB1         --------->LBD16    <----------DOF2   --------->DAG2        --------->ARR11(3)    <---------LBD16   <---------ANAC58  --------->SPL7         <---------ARR11(3)   ------>ZmHOX2a(1)                 <-   <---------ANAC58  ---------->DOF2    ---------->DOF2      --------->ARR14(2)       <---------At4g35610 ->GLK1(1)        --------->ANAC58   --------->At4g35610     <---------ARR14(2)       --------->At4g35610   gaatggctttggcctatggaacgtaaggcgctgcagaacagctaaagatcatagtgagcataggttcctccggttttaccagttttgtagcagacgaatt  5226600                                       -------->HAHB4                                       --------->YAB1                               <-------GAMYB                              <------MYB46(1)                         <---------HSFB2a(1)                 --------->ATHB12   --------->YAB1                <---------YAB1<------MYB83   --------->ZAT18             ---------->ID1  <---------AtMYB61             <---------TOE2(3)<---------MYB46(3)                     --------->ANAC58         <----------DOF2 <------MYB46(1)     <---------ZAT14         --------->ANAC58      <-----------GT1    <------MYB83 --------->ICU4                --------->YAB1       --------->KAN4(1)     <<<<<<<<<MYB98      --------->HSFB2a(1) --------->ZAT14     --------->YAB1         <---------KAN4(2)  ------->TEIL <-------GAMYB --------->MYB59 <---------ZAT18   <---------YAB1      ---------->DOF2 ---------DOF2<---------MYB46(3) ----------->GT1          <---------ICU4    ------>ZmHOX2a(1)      <-   gctgtatgttactttgtggttattggaaggtttggttgtaataatactgcacaattttcatcagtattaataagcatccttcttctaaagaacattcaaa  5226700                                                           --------->YAB1                                                           -------->HAHB4                                                           XXXXXXXXXXXXXXXXXXXX>MIR842                                                          <---------YAB1                                                          --------->ICU4                                                        --------->YAB1                                                        <---------ICU4                                                       --------->ICU4          --------->LBD16                            --------->YAB1         --------->O2                            ---------->DOF2         <---------O2                          --------->ANAC58        <---------LBD16                        --------->ANAC46                                  <---  <---------ANAC58     ---------->DOF2     --------->HSFB2a(2)           ------>MYB83           <----  <---------ANAC58  <-------TEIL           <---------HSFB2a(2)           ------>MYB46(1)     -------- ----------GT1---------->DOF2  <----------DOF2 --------->ANAC58     <-----------GT1   ---------->DOF2   tataccttgccacgggaaaagatgcaaaagagccttttatgtgttccacaagaaagaataatgatcaaattcaccatccaaggagaggcaaagaagtggt  5226800                                 ------>MYB46(1)                                 ------>MYB83                                <---------CCA1(2)     <---------ZAT6            <---------MYB111(2)  --------->HSFC1(1)        <---------ALFIN1  >>>>>>>ZML2               --------->DEAR3(1)  <---------HSFB2a(2)       --------->AtMYB61                   --------->ZAT6  --------->HSFB2a(2)      --------->MYB46(3)                 <-----------HVH21  <---------HSFC1(1)     --------->AtMYB61                   ------>ZmHOX2a(1) ------MYB46(3)          ------->GAMYB                     ----------->RAV1(2) ----P                  <---------MYB55(2)              <---------At4g35610           ----------->GT1 ->ALFIN1               --------->MYB46(3)        <-----------ARR10      ------>ZmHOX2a(1) XXXXXXXXXX   agttctagagctagtaaaccaatgcaaccaccacctatctccaaattgagagcatctcatctcctgtcactagtcctacttcttgcaagagtaaattgaa  5226900                                                  --------->ANAC58                                                  --------->ANAC58                                           ---------->DOF2                                       <---------------AGL15                                       --------------->AGL15                                       <----------DOF2                       ------->TEIL   <---------ANAC46            ---------->DOF2           <---------ANAC58                                             --     ------->TEIL   ------>ZmHOX2a(1) <-----------------AGL3       ---------->DOF2              ----- XXXXXXXXXX>MIR846----------->RAV1(2) <---------ANAC58        <---------ANAC46                <------   atactcgaacctgtaaaagctcctgaaccttggcaacatggcttttaaaggcacccatagactgtcgagtaaaggaataacatatatttcatacaacttt  5227000                                        --------->ALFIN1                                       <-------MYC3            --------->TOE2(2)          ------->MYC3            --------->TOE1(2)          ------->MYC2            --------->ARR11(3)         <<<<<<<<<GT-1    <-----------------AGL1               <---------ARR14(2)                 ---       <----------DOF2   --------->PCF2<-------MYC2            --------->ARR14(2)                 --- ------->ZAT6            <---------ARR14(2)        --------->At4g35610                         ------ ------>HVH21            --------->ARR14(2)        <---------At4g35610        --------->AHL20(1)<---- ----DOF2<-----------GT1<------ZmHOX2a(1)       *TSS           <---------ARR11(3)   --------->At4g35610   gacactgcgatttaccttcgaatagaggaccctcataggcatgtgtgtgattcagcttataagcagatattgtttagacatatattagctcaacatataa  5227100                                                                              <---------ARR14(2)                                                                              --------->ARR11(1)                                                                     --------->HSFC1(2)                                                                     <---------HSFC1(2)                                                                     <---------HSFB2a(1)                                                                     --------->HSFB2a(1)                                                                 --------->LBD16<-------TEIL            <------ZmHOX2a(1)                        --------->At5g28300    ----------->ARR10      <---------YAB1                    <---------AHL20(2)      <---------HSFB2a(2)    --------->YAB1                      <---------AHL20(1)      --------->HSFB2a(2) ------>GLK1(2)    --------->LBD16      --------->AHL20(2)   <---------ARR14(2)--------->CCA1(2) ------>ARR11(3)   ----------->GT1      --------->AHL20(1)   --------->ARR14(2)--------->ARR14(1) --->AHL20(2)    --------->ZAT18       <---------ATHB12      --------->GLK1(2)--------->ARR14(2) -----AHL20(2)   <---------LBD16       --------->AHL20(2)   <---------GLK1(2) <---------GLK1(2)     -   aatctagcattataggaagcgcggaaaaaaactaaaacccaataaattcttggactgtaacagaatccagaagttcccaagattcgcttcccctataaaa  5227200                <-----------GT1            <---------DAG2            <----------DOF2        <------------MYB.PH3(1)      <---------ARR14(2)      --------->MYB52(1)      --------->ARR14(2)                                                   <---------ARR11(3)   --------->YAB1                                                          --------->ARR11(3)   <---------ICU4                                             <<<<<<<<<<<<<<<<<LFY  <---------ATHB12                                --------->AtMYB61   <---------ANAC46<----------DOF2 -------->WOX13(1) <----------DOF2   <-----------GT1       --------->YAB1  --------->GLK1(2)   cccaatcataaccgcttttttctttcttcgtcttccattttactctcttcgacctcacaaatcacaacaatggcgaaaatctcgagcgcttcttgtttca  5227300                                                                                                   --                                                                                                   <-                   --------->YAB1                                                                <---              --------->ZAT2                              <----------DOF2                      <-----              --------->At4g35610                   <---------ANAC58                           <-----              <---------At4g35610                   <---------ANAC58                          -------              --------->GLK1(1)                   --------->LBD16                             -------              <---------GLK1(1)                  --------->DREB2C(2)                         --------              <---------ZAT2                     --------->DEAR3(1)                          ------>NtERF2         <---------LBD16                        --------->DEAR3(2)                          <--------         <---------HSFB2a(2)                  <---------ALFIN1          ---------->DOF2    <---------LBD16         --------->HSFB2a(2)               --------->ANAC46       ----------->GT1         ------>ZmHOX2a(1)     <----------DOF2       ------>ZmHOX2a(1) --------->MYB46(3)   <---------ZAT6     --------->DEAR3(1)   gagccatctttctcggagctctcatcatcctctgtctccctcatccctccaccggcgttcctttggaagagttagaaagagccatcgccatcctccgcgt  5227400       <---------ZAT18    <---------ANAC58                                                                    ------>NtERF2    <---------ANAC58                                                                   <---------ALFIN1   --------->ALFIN1                    <------ZmHOX2a(2)                              <------NtERF2  ----------------------->TaNAC69(2)  <---------ARR14(2)                              <---------MYB55(2) ------->At4g35610                    --------->ARR14(2)                              --------->MYB46(3) --------At4g35610                    <---------ARR11(3)                              <---------ABI4(2) --------RAV1(2)                      <-----------ARR10        <---------TGA1a       <---------ATERF1(1) ------TGA1                           --------->ARR11(3)       --------->O2          ------>NtERF2 ------HVH21                  <---------ALFIN1                 <---------O2         --------->DEAR3(1) -->ANAC46                 <---------ICU4                      --------->TGA1a      --------->PCF2 -->bZIP60(2)              --------->YAB1                    ------>NtERF2          --------->RAP2.3(3) ->LBD16                  --------->ICU4------>ZmHOX2a(2)   --------->DEAR3(1)      --------->ANAC46 -ALFIN1       --------->ANAC46  --------->DEAR3(1)         ----------->HVH21     <---------ATERF1(1)   cagaggtcgtgctctcttcgccaatgccatcatcacctccgatcttctcttcgatctactctccgacgagtctctcactctcttcgcccccaccgattcc  5227500  Previous    Next  AGI:  At1g15180.1    Description:  MATE efflux family protein. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15150.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42224.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528); contains InterPro domain MATE family transporter related protein (InterPro:IPR015521) Range:  from: 5224380    to: 5226697    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g15190.1    Description:  Identical to Fasciclin-like arabinogalactan protein 19 precursor (FLA19) [Arabidopsis Thaliana] (GB:Q5Q0H2;GB:Q9XI50); contains InterPro domain Beta-Ig-H3/fasciclin (InterPro:IPR000782) Range:  from: 5227048    to: 5228197    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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