Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <------ZmHOX2a(1)                                                                 --------->ANAC58                                    ---------->DOF2              --------->ANAC58                          --------->AHL20(2)                   ---------->DOF2                        --------->TOE2(3)     ------------------------>ANAC81   <------ZmHOX2a(2) ----->DOF2  <---------ARR11(3)  --------->TOE2(3)  --------->GLK1(1)     =============HOX2a_HOX2a  <   aagcatagagaacaagaccataaaaacataaattacatcaaagaacaagaacagaaatctaaaaacaaagcaagaaggagcgatcacacttcaaataaac  5224000                                                         --------->ALFIN1                                                        <-----------HVH21                                                      <---------MYB46(3)                                                     <---------ANAC46                                                     <---------ANAC58                                                <---------At4g35610       <---------TOE2(2)                                   <------ZmHOX2a(2) <---------ANAC58     <---------TOE1(2)                                  <-----------ARR10--------->MYB52(1)    <-----------RAV1(2)                                  <---------ARR11(3)<-----------------------TaNAC69(2)                                  --------->AGP1--------->At4g35610     --------->ZAT14                               <---------HSFB2a(2)----------->TGA1    <------NtERF2                          ------>MYB83        <------NtERF2           --------->At4g35610             ---------->DOF2   --------->HSFB2a(2)----------->HVH21   <---------At4g35610         <---------ZAT18  ------>MYB46(1)    --------->LBD16        <---------WRKY38(1)         --------->ZAT18<---------MYB59     <---------ANAC46        <---------WRKY12     --------->ALFIN1   <---------MYB46(2)  <---------DEAR3(1)    <-----------HVH21--------->TOE2(2)  <---------TOE2(3)    --------->ANAC55(2) <---------LBD16  <---------ANAC46       --------->TOE1(2) ---------ATHB12     <---------ALFIN1   --------->DEAR3(2) --------->ALFIN1 <------ZmHOX2a(1)   caatgaggtagtggacaaagccctcacctaattccagatcaaaccggcggagatgacgggtgaggggaagtcagcgcaggataaacatgggagggagaga  5224100                                                                                       --------->ANAC58                                                                                ------->MYC3                                                                                <-------MYC3                                                                                <-------MYC2                                                                                <-------MYC4                                                                                <-------PIF5                                                                                ------->MYC4                                                                                ------->PIF5                                   ---------->DOF2                              ------->MYC2                                 <------NtERF2                                 --------->O2        --                                ------>NtERF2                                  ======================                               --------->RAP2.6(2)                             <---------ANAC46 <----                               <----------ID1                                  <---------ANAC55(2) <-                              --------->ATERF1(1)                              ======================                              --------->RAP2.3(1)                              <---------O2  --------                              <---------ZAT18                                  <---------TGA1a-------                              <---------PCF2                                   --------->TGA1a<------                              --------->ZAT18           --------->ATHB12    ---------------->PIF3(2)                *TSS ----------->HVH21          <---------ANAC58           ----------------->PIF3(1)                <-------MYC3 <---------ATERF1(1)<---------ANAC58          ----------->HVH21  <-------                ------->MYC3<---------RAP2.3(3) <---------ANAC46        ----------->GT1--------->ANAC58   gatagtggctaaattccacatgggtgacagagggcgccaaagtatgacttacttggagtgatttggatagaaaatggtgacacgtggacactcaagatat  5224200       <----------DOF2     <---------ZAT2    <-----------GT1      --------->ZAT18   <-----------GT1<---------ALFIN1 ------->ICU4    <---------MYB55(2) =================bZIP_DOF <---------At4g35610 -----YAB1       --------->MYB46(3)                                                           <------ --------YAB1   -------->P --------->At4g35610                                                ------- ========================MYC_MYB    <------ZmHOX2a(1)    --------->ANAC46                    -------- ->ARR11(3)     ------>MYB46(1) --------->REM1(2)        --------->ANAC58                   ------>NtERF2 -->GLK1(1)     ------>MYB83 <---------ANAC46            --------->ANAC58                  --------->ANAC46 ---GLK1(1)    --------->ANAC46--------->ALFIN1   ------->TEIL                             <---------ALFIN1 --ARR11(3)<-----------GT1 --------->ZAT2      --------->ICU4           ----------->GT1   --------->MYB46(3)   catttttatctttttcccaaccacttgtgagctgtgtaggagagaagtaatgaacatataagcaaaaacaaatgttgttacaaaaacaagtccccaccac  5224300                                                                         <---------ANAC55(2)                                                               ---------->DOF2                                                            --------->ANAC58                                                            --------->ANAC58                                                          ------->GAMYB  --------->ANAC55(2)   <---------------AGL15                               <-----------GT1  <---------ICU4   --------------->AGL15                         <---------ANAC58  --------->AHL20(2) ---ALFIN1                                 <---------TOE2(3)--------->ANAC46 ---->RAV1(1)                  --------->GLK1(1) <---------ANAC58----------->GT1 ->ANAC46            --------->YAB1       <-----------GT1--------->MYB46(3)     *TSS    <-----------GT1   atttactactactagtttgacaaacataaacacatttcccttattaacatttcttgttaaccacacaaagttaataagtaacccaagtttatacagtttt  5224400                                                                                       --------->LBD16                                                                                      --------->LBD16                                                                                     <---------LBD16                                                                                 <---------At4g35610                                                                                 --------->ZAT2                                                   --------->ANAC58              --------->At4g35610                                                   --------->ANAC58           <---------At4g35610                                                 <---------ATERF1(1)       <---------ANAC58                                 <---------At4g35610                       <---------ANAC58                     ------>NtERF2     --------->ANAC46                   --------->STY1(2)                     --------->LBD16   --------->ANAC58    --------->ZAT18--------->ZAT2                   <---------LBD16     --------->ANAC58    <---------ZAT18<---------STY1(2)   aaaacattctctctatctccctccggctaggctgtagctgttcgccatgggagacgcagagagcacctccaaaactagcttgctgctcccggtggaaaga  5224500                                                                                       <-------GAMYB                                                                                      <---------MYB46(3)                                                                                    <------NtERF2                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                    <-------GAMYB                                                                                   <---------MYB46(3)                                                                                   <---------ERF1                                                                                   <---------RAP2.3(1)                                                                                   ------>NtERF2                     ------>ZmHOX2a(2)                                            <---------DEAR3(1)                    --------->CCA1(2)                                             <---------ATERF1(2)                   --------->AGP1                                                 <---------ANAC58                   --------->ARR11(3)                                             <---------RAP2.3(2)                   <---------ARR11(3)                                             <---------DREB2C(2)                   --------->ARR14(3)                                             <---------RRTF1(3)                   <---------ARR14(2)                                             <---------ANAC46                   --------->ARR14(2)                                             <---------RRTF1(2)                  <---------GLK1(1)                                               <---------RAP2.3(3)                  --------->GLK1(1)                                     ------>NtERF2 --------->MYB55(2)                 ----------->ARR10        --------->LBD16               <---------At4g35610          <---------bZIP60(2)             --------->ZAT14             <---------RAP2.6(2)          <---------ANAC46               --------->DEAR3(1)       <----------DOF2 --------->ATERF1(2)       ----------->HVH21                --------->ANAC46    --------->ARR14(2)    <---------ANAC58     <---------ANAC55(2)               <---------At5g28300  <---------ARR14(2)    <---------RAP2.6(2)     ----------->GT1<------ZmHOX2a(2) <-----------GT1    <---------ANAC58        --------->RAP2.6(3)     --------->ANAC55(2)          --------->KAN4(1)      <---------ANAC58    ------>ZmHOX2a(1)   gttgaaaacgtgacatggagagatctgcgagatggattattcaccgcagaactcaagaggcttatctgctttgccgctcctatggcggctgttgttatcg  5224600                                          <---------LBD16                                        <---------ZAT2                                        --------->O2                                        <--------                                      <---------WRKY38(1)                                   <--------                                     <<<<<<<<<<WRKY26                                      <---------O2                                     <<<<<<<<<<WRKY38                                      --------->O2                                    <-----------HVH21                                      --------->bZIP60(2)                                   <------MYB83                                            <---------bZIP60(1)                               --------->ATHB12                                            --------->ANAC58                               <---------MYB46(3)                                          --------->bZIP60(1)                              <---------AtMYB61                                            --------->TGA1a                              <---------YAB1   --------->GLK1(1)                           --------->ANAC46                  --------->At4g35610<<<<<<<<<<WRKY43                                      ==========               <------ZmHOX2a(2)   <------MYB46(1)                                    --------->HSFB2a(2)              --------->ARR14(2)   <---------MYB46(3)                                 <---------HSFB2a(2)              <---------ARR11(3)  <---------AtMYB61                                ------>ZmHOX2a(1)              <-----------ARR10--------->MYB55(2)                               ------>ZmHOX2a(1)              --------->ARR11(3)  <---------MYB46(3)                           <---------ALFIN1  ----              <---------ARR14(2) <--------P--------->TOE1(1)                 ------>NtERF2 --------->ANAC58             <---------At4g35610<-------GAMYB  <---------GLK1(1)             <---------ATERF1(1)<----      <-----------RAV1(1)--------->YAB1 <---------O2                        --------->DEAR3(1)  <----   ctcagttcatgttgcagatcatctcaatggtgatggttggtcacctcggaaatctctccctcgctagtgcctctctcgcctcctccttctgcaacgtcac  5224700                                                                                                  <--       <----------DOF2                                                                           <---     <---------At4g35610                                                                        <----     --------->At4g35610                                                            <---------ANAC58 ---TGA1<-------TEIL                                                                --------->ANAC55(2) ---HVH21                                          --------------->AGL15            <---------ANAC55(2) =================bZIP_DOF                         <---------------AGL15            <---------ANAC58 ----->DEAR3(1)                             --------->ZAT6                     <---------ICU4   <---- -----LBD16                            <----------DOF2                 <---------ANAC58        ------ -----At4g35610                      ------>ZmHOX2a(1)                 <---------ANAC58--------->ATHB12   cggcttcagcttcatcgtctgttttctcttccttctctcctctttatctctatctattactagttatcaaattgcatcccctcattacttgattagttga  5224800                              ------->MYC3                              <-------MYC3                         <-----------HVH21                      >>>>>>>>>ARR1                      >>>>>>>>>ARR1                      >>>>>>>>>ARR2    <---------DAG2    >>>>>>>>>ARR2            <---------ANAC58    <----------DOF2  <------ZmHOX2a(1)     <----------DOF2 <-----------GT1    <------MYB46(1)    <---------GLK1(2)                           --------->TOE1(2) -------MYB46(3)    <------MYB83     ----------->ARR10               --------->ANAC58      --------->ZAT14 ------WOX13(1)   <--------P --------->At4g35610                     --------->ANAC58      <---------ZAT14 -----ANAC58    <------MYB83 <---------At4g35610                 --------->At4g35610     <---------GLK1(1) -----ANAC58    <---------STY1(2) <---------ANAC46  --------->WRKY18(1)         ---------->DOF2 --->ATHB12     <------MYB46(1) ------->TEIL   <---------ANAC58  <---------At4g35610   <------ZmHOX2a(1)   ttgttactttttgatgctaggtaggattgtcatgtgccttagatactttgagtggtcaagcttatggagctaagctatatcggaaagtaggagttcagac  5224900  Previous    Next  AGI:  At1g15175.1    Description:  other RNA Range:  from: 5222908    to: 5224116    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15180.1    Description:  MATE efflux family protein. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15150.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42224.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528); contains InterPro domain MATE family transporter related protein (InterPro:IPR015521) Range:  from: 5224380    to: 5226697    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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