Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->ARR11(3)                                         --------->ARR14(2)                 <---------LBD16                                         <---------ARR11(3)                 ------>ZmHOX2a(2)                                         <---------ARR14(2)                --------->CCA1(2)                                   ------>ZmHOX2a(2)                       --------->ARR14(1)                                  <------ZmHOX2a(2)                        <------ZmHOX2a(2)                                 <---------ARR14(2)                       --------->AGP1                                 --------->ARR11(3)                       --------->ARR14(2)                                 --------->ARR14(2)                       <---------ARR11(3)                                 --------->GLK1(2)                        <---------ARR14(3)                                 ------->TEIL                             --------->ARR14(3)                                 <---------AGP1                     --------->CCA1(2)                                <---------CCA1(2)                  --------->TOE1(2)                              --------->ANAC58                    --------->ZAT2                              <---------ANAC55(2)                 <---------ZAT2  <---------ANAC58                              --------->ANAC58                    <---------HSFC1(2)                              --------->ANAC46                    --------->HSFC1(2)                              --------->ANAC55(2)       <---------ANAC58  --------->ARR11(3)                              --------->ANAC55(1)       <---------ANAC58  <---------ARR14(2)                             <---------LBD16      --------->LBD16------->TEIL     <---------ANAC58                         =================HOX2a_HOX2a   <---------ANAC46 <---------GLK1(1)                         <------ZmHOX2a(1)   ----------->HVH21--------->ANAC46--------->LBD16   ---------->DOF2       ================HOX2a_HOX2a<-----------HVH21    --------->GLK1(1)   gccataaaagaaggcttctcaacatcaggaacacggatctggagatactgaccgggtctcgtgtacgaagctacgagatccggagcgtttgaaatgtcga  5211900                                                                                       <---------ANAC46                                                                                      <------NtERF2                                                                                      <---------LBD16                                                                                      <---------At4g35610                                                                                      --------->ATERF1(1)                                                                                     <---------RAP2.3(1)                                                                                     ------>NtERF2                                                                                     <---------ORA47(2)                                                                                     <---------ERF1                                                                                     <---------DEAR4(2)                                                                                     <---------RAP2.6(1)                                                                                     <---------RRTF1(1)                                                                                     <---------ATERF1(1)                                                                                    <---------RAP2.3(2)                                                                                    <---------RAP2.3(3)                                                                                    <---------RRTF1(2)                                                                                    <---------ANAC46                                                                                    <---------ATERF1(2)                                                                                    --------->ALFIN1                                                                                    <---------RRTF1(3)                                                                                    <---------RAP2.6(2)                                                                                   <------NtERF2                                                                                   --------->At4g35610                                                                                   <---------At4g35610                                                                                   <---------ABI4(1)                                                                                   --------->DREB2C(1)                                                                                   --------->ATERF1(1)                                                                                  ------>NtERF2                                                                                  <---------ATERF1(1)                                                                                  <---------RAP2.6(1)                                                                                  <---------DEAR4(2)                                                                                  <---------ERF1                                                                                  <---------RRTF1(1)                                                                                  <---------RAP2.3(1)                                                                                 <---------DEAR3(1)                                                                                 <---------DREB2C(2)                                                                                 --------->DEAR3(1)                                                                                 <---------RAP2.3(2)                                                                                 <---------RRTF1(2)                                                                                 <---------RAP2.3(3)                                                                                 <---------ATERF1(2)                                                                                 <---------RAP2.6(2)                                                                                 <---------RRTF1(3)                                                                                <---------ABI4(1)                                                                              <---------DEAR3(1)                                                                             --------->SPL7--------->CCA1(2)                                                                            --------->MYB52(1)-------                       <---------ZAT2                                      <---------SPL7<------NtERF2                       --------->ZAT2                                     <---------ANAC58<---------ARR14(2)                       --------->At4g35610                                <---------ANAC58--------->ARR14(2)                       <---------At4g35610             <---------ZAT14  <------------------SPL14 ----                    <---------At4g35610        --------->ZAT2          ------>ZmHOX2a(1)<---------MYB46(3)                --------->ARR14(2)             --------->At4g35610 --------->ZAT18<---------ORA47(2)                --------->GLK1(2)              <---------At4g35610 <-----------HVH21<---------DEAR3(1)                <---------ARR14(2)             <---------ZAT2    <---------HSFC1(2)--------->DEAR4(2)               <---------GLK1(2)              <---------ARR14(2) --------->HSFC1(2)--------->RAP2.3(1)          --------->DAG2                      --------->ARR14(2) <---------HSFB2a(1)--------->DEAR3(1)         ---------->DOF2                     <------ZmHOX2a(1)   --------->HSFB2a(1)--------->ATERF1(2)   ttgagatgtggaaaagcgattctgcagctgattcgattagagagagaggagctggagtccagagggaagcgtcctggcgaacggcggcggcggatacaac  5212000                 --------->HSFB2a(2)                <---------LBD16                <---------ANAC46         <-------GAMYB                           --------->ALFIN1--------->ALFIN1         --------->At5g28300                   --------->At4g35610        ----------->GT1           <---------ANAC58       <------ZmHOX2a(1)      ------>NtERF2               <---------ANAC55(1)  <---------TOE1(2)     <---------O2<---------HSFB2a(2)--------->ALFIN1   <---------TOE2(2)                 <---------ZAT18     <---------ANAC46             <---------ANAC46    <-----------RAV1(2)                --------->ZAT18  ----------->HVH21               <---------ANAC58  <---------ANAC46                 --------->DAG2 --------->DEAR3(2)    --------->MYB52(1)      <---------At4g35610             --------->ALFIN1 -->MYB52(1)   <---------LBD16    <---------bZIP60(2) <------NtERF2          --------->ALFIN1     --- --->GAMYB<---------MYB52(1)     <-----------------------TaNAC69(2) <---------ANAC46---------->DOF2   ggaagcgacgcggttatttcgggataaacggagatggcgtgtaagagggagatggcgcaggataaacatgggggagagggagtggctaaagtgcgcatgg  5212100                                                                                          ------>NtERF2                                                                                          <---------SPL7                                                                                          <---------ATERF1(1)                                                                                          <---------DEAR4(2)                                                                                          <---------RAP2.3(1)                                                                                          <---------DEAR3(2)                                                                                         <---------RAP2.3(3)                                                                                    --------->DAG2                                                                                   ---------->DOF2                                                                              --------->At5g28300                                                                              <------NtERF2                                                                             <---------DEAR3(2)                                                                             <---------MYB46(3)                                                                            <---------DEAR3(1)                                                                           <------NtERF2 <---------RAP2.6(2)                                                                          <---------ATERF1(1)                                                                          ------>NtERF2  <---------RAP2.3(2)                                                                          <---------DEAR4(2)                                                                          --------->LBD16<---------DEAR3(1)                                                                          <---------RAP2.3(1)            ---------->DOF2                                              <---------ATERF1(2)       <-          <------NtERF2                                                  <---------RAP2.3(2)       <-          --------->ANAC58                                               --------->ATERF1(2)       <-          --------->ANAC58                                               <---------DEAR3(1)------>NtERF2         ------>NtERF2                                                   --------->DEAR3(1)<------NtERF2        <---------ANAC46       <---------ANAC46                         <---------LBD16 --------->RAP2.6(3)    ---------->DOF2    <---------ZAT18                  ----------->HVH21<---------RAP2.3(3)   ------ -------->HVH21        --------->ZAT18    <-----------RAV1(1)<-----------HVH21<-------GAMYB--------->ATERF1(1)   gtgacagaaggcgcgaaaggaagagtggacatggtggagagtttttggggctctatatgtgaccgtcaaatttagccggcggtagaaaagggcggcccga  5212200                                                                                --------->YAB1                                                                       ------->MYC4                                                                       ------->MYC2                                                                       ------->MYC3           --------->ANAC58                                            <-------MYC3        <------NtERF2                                                  <-------PIF5       ------>NtERF2                                                   ------->PIF5    <---------ANAC58                                 <-------GAMYB     <-------MYC2    <------MYB83                                     ===========================MYC_MYB    <------MYB46(1)                                 <---------ANAC58   <-------MYC4    <---------ANAC58                         <-----------GT1          --------->O2   --------->MYB46(2)                     ------>MYB46(1)             <---------PIF3(3)   <---------DEAR3(1)                   <---------MYB59               <---------ANAC46              <   --------->MYB52(2)                   <---------MYB46(2)            <---------TGA1a <---------ARR11(3)   <---------MYB46(3)                   <---------MYB111(1)           --------->TGA1a --------->ARR11(3)   --------->MYB55(2)                  --------->ANAC58               <---------O2   --------->RVE1(1) -----MYB83<---------YAB1              --------->ANAC46               <<<<<<<<<<HY5  --------->CCA1(1) -----MYB46(1)          <---------AHL20(2)------>MYB83<---------MYB52(1)--------->ALFIN1         <--- --------MYB46(3)<---------ZAT6        --------->ANAC58               =============================== --->ATHB12--------->ANAC58           ------->TEIL  <---------ANAC58  --------->PIF3(3)<---------YAB1   ttggttcggtggcacgattgtgttatttttttttgctatgcacctaatttccttccgttacaatgttttgccacgtggatgatcaaaatatcattctatc  5212300                                                                                                 <---                                                                                             --------                                                            <---------ZAT2                 ----------                                                            <---------STY1(2)              --------->ANAC55(2)        <---------ALFIN1                                    --------->STY1(2)              <---------ANAC55(2)       --------->MYB46(3)                        <---------AHL20(2)                     <---------ATHB12    <---------ETT(1)                             --------->AHL20(2)    ---------->DOF2------>MYB46(1) ----------DOF2                             *TSS--------->AHL20(2) <----------DOF2    ------>MYB83 -- --------GT1     <---------YAB1   <---------ANAC58       <---------ANAC58           --------->AtMYB61 ==========bZIP_DOF               <---------ANAC58       <---------ANAC58        <----------ID1  ----   tactttccgaccacttgttgtgatacttcgaaaattgcattccctcttcatttaattttgctagctcgtctttcaaagaaaaaacaccaaatcatgtaat  5212400                                                          <-------TEIL                                                      --------------->AtSPL8                             ------------>CBF         <---------------AtSPL8         --------->WRKY12                            --------->ANAC58      --------->TOE2(2)             -------->P        <------------CBF    --------->ANAC46      --------->TOE1(2)             ------>MYB83       <- ------AHL20(2)        <----------ID1            <---------ANAC55(2)    --------->ZAT6            <-- ->AHL20(2)          ----------->GT1             --------->ANAC58    --------->YAB1<-------GAMYB  <-- ->GT1 <---------GLK1(2)    --------->ANAC58     --------->ANAC58   <---------ATHB12 --------->WRKY38(1) -------->DOF2      --------->DAG2         --------->AHL20(2)     --------->WOX13(1)<---------MYB52(1) ----->AHL20(2)    ---------->DOF2         <---------AHL20(2)   <---------YAB1  ------>MYB46(1) <----   taaaagacagaattgtggaagaaaagtgacaagcaatatgcatattaaaaaacgtaagagtacattatcaatgaacactccctaccgttgagccaaattt  5212500         <---------AHL20(2)     <---------AHL20(2)                     --------->ZAT14                                 ---------    <---------ARR11(3)                      <---------ZAT18                           ----------->RAV1(1)    --------->ARR11(3)                      <---------ZAT14                        --------->ANAC58    <---------AHL20(1)                    --------->ANAC58                         --------->ANAC58   <---------CCA1(2)                      --------->ANAC58                         --------->ANAC46  ------->TEIL                       --------->ALFIN1                      --------->ANAC55(1) --------ANAC46                    <---------O2                    <------ZmHOX2a(1)--------->MYB46(3) -------TOE1(3)                    <---------TGA1a               --------->ANAC58  ------>MYB46(1) -------TOE2(3)                    --------->TGA1a               --------->ANAC58  ------>MYB83 -------GT1   --------->YAB1       --------->O2      <---------GLK1(2)     --------->ANAC46----------   aacgtatatatttcattcatggttttggaattttgccaagtggcactacactatagattcccttggtaaggaattacacataaccaagcaccaaaaagca  5212600                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                  <--                             <----------DOF2                                --------->LBD16      ----                             <---------DAG2                               <---------LBD16      ------                       --------->ANAC46                           --------->ANAC58             <-----                   --------->ZAT6                                 --------->AtLEC2            -------                  <---------YAB1                                  --------->ANAC58          ---------                <---------ICU4   <---------ANAC58            --------->ANAC58           --------->AtMYB61 >DAG2      <---------YAB1<---------ALFIN1<----------DOF2    --------->ANAC46       --------->MYB46(3) >DOF2    *TSS  --------->YAB1   <---------ANAC58            --------->ANAC58<------NtERF2 <---------ATHB12   gacagtagtacttcacgattatcactcaccactttccgtttcaactttcaaactctctctcacaagccatgcaagacgcggagagaaccaccaatgatcc  5212700                                          ------->TEIL                                 ------>ZmHOX2a(1)                                          --------->ARR11(3)                        ------>NtERF2----                                          <---------ARR11(3)                      <---------At4g35610                               ------>ZmHOX2a(2)                                  --------->ATERF1(1)                              --------->At4g35610                                <---------RRTF1(1)                              <------ZmHOX2a(2)                                  <---------ATERF1(1)                             --------->ARR11(3)                                  <---------RAP2.3(1)                             --------->ARR14(3)                                 <---------RAP2.6(2)                             <---------ARR11(3)     --------->ZAT14             <---------RAP2.3(2)                             --------->AGP1<------ZmHOX2a(2)                    <---------RAP2.3(3) ---------ETT(2)             <---------ARR14(2)     --------->LBD16             <---------RRTF1(2) <- -------->ETT(2)             --------->ARR14(2)    --------->DEAR3(1)           <---------ANAC58<---- -------P                  ----------->ARR10------>ZmHOX2a(2)                   <---------ANAC58<---- -------MYB52(1)    <---------ANAC46      <---------ARR14(2)                   <---------LBD16  <---- ----->LBD16        <---------bZIP60(2)   --------->ARR14(2)                <----------DOF2     <---- >ZmHOX2a(2)     ----------->HVH21<---------AtLEC2--------->ANAC46    --------->ARR14(2)      ------>NtERF2 ----LBD16     ----------->GT1--------->CCA1(2)  <---------At5g28300  <---------ARR14(2)    <-------- -->ARR14(1)  --------->DAG2<---------GLK1(1) <-----------HVH21    <---------ANAC58--------->ARR14(2) >YAB1       ---------->DOF2--------->GLK1(1)<----------DOF2       <---------ANAC58<---------ARR14(2)   ggtagacagaattgagaaagtgacatggagagatctgcaagacggatctttcaccgcagaactcaagaggcttatctgctttgcggctcctatggctgcc  5212800  Previous    Next  AGI:  At1g15140.1    Description:  oxidoreductase NAD-binding domain-containing protein. similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.3); similar to ATLFNR2 (LEAF FNR 2), NADPH dehydrogenase/ oxidoreductase/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.1); similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42229.1); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Pheno Range:  from: 5210201    to: 5212344    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15150.1    Description:  MATE efflux family protein. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15180.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42224.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528); contains InterPro domain MATE family transporter related protein (InterPro:IPR015521) Range:  from: 5212610    to: 5214853    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version