Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------WRKY18(1)               <---------SPL7       ----------->HVH21----------->HVH21 ------>NtERF2<---------MYB46(3) -------->DEAR3(1)   --------->WRKY18(1) ------->ATERF1(1)  <-----------HVH21                                                            ---- -------ATERF1(1)   <---------RAP2.6(3)                                                          <--- ----->bZIP60(1) <---------ZAT18                                                                 ---- ------bZIP60(1)<---------ANAC46                                             <----------DOF2     <--- ------O2    <---------AtMYB61                 --------->STY1(2)        --------->At4g35610 --------- --->MYB52(1)--------->ALFIN1                  <---------STY1(2)        <---------ZAT2    ------->TEIL ---->TGA1<---------DEAR3(1)        --------->ARR14(2)                  <---------At4g35610<---------KAN4(1) ---->HVH21  <---------DEAR3(1)     <---------ARR14(2)   <---------YAB1 --------->ZAT2 <---------ATHB12   cgacgcccatcgacggtggtgcggtcatgaccgagtccaatctggctgtagctagcaccaagattgaatagaacagctgctttctccaaatgaatgttct  5209500                                                      --------->WRKY38(1)                                                      --------->WRKY12                                 --------->SPL7       ----------->HVH21                               <---------SPL7       <-------GAMYB      --------->At4g35610                   --------------------->WRI1      <---------ANAC46   >>>>>>>GRF7                   <---------ANAC58                <---------DEAR3(1)<-----------RAV1(2)       <----------DOF2   --------->ANAC58         <------NtERF2 <---------ANAC58       <---------DAG2  ---------->DOF2        --------->CCA1(2) <---------ANAC58                  --- ----->At4g35610   <---------ANAC58    --------->ANAC46        ------>ZmHOX2a(2)                  --- ------ZAT2        <---------ANAC46    --------->ANAC58       <---------YAB1                    ----- ----->ZAT2   <----------DOF2 --------->TOE2(1) <---------DEAR3(1) <-----------HVH21    <---------ANAC58 ------At4g35610   <---------AtLEC2    --------->ANAC58      --------->ARR11(3)         <---------ANAC58 >KAN4(2)  <---------YAB1--------->ANAC58---------->DOF2     <---------ARR11(3)    <---------GLK1(1)   gctgagtagctttatgcttttgcttgaaagcatcgtaccatacgaaagagacggcgttgacatgatccttgtcaggggaaattggaaatcgcgtctccac  5209600                                                                                              -------                                                                                              <------                                                      --------->ARR14(2)                <----------DOF2                                                     <------ZmHOX2a(1)                --------->At4g35610                                                     =================================HOX2a_HOX2a                                           <---------ZAT2  <---------ARR14(2)      <---------ZAT2                                           --------->At4g35610                     --------->ZAT2                                           --------->ZAT2  --------->ARR14(2)      <---------At4g35610                                           ----------->RAV1(2)                     --------->At4g35610         <----------DOF2                   <---------At4g35610                    --------->ARR14(2)      --------->ARR11(3)              ------>NtERF2  ================================HOX2a_HOX2a      <---------ARR11(3)      --------->ARR11(3)    --------->HSFC1(2)            <---------ARR14(2)  ---------->DOF2             <---------ARR14(3)    <---------HSFC1(2)         ------>ZmHOX2a(2) ------>ANAC58                <---------ARR11(3)    <---------HSFB2a(1)       <------ZmHOX2a(2) ------>ANAC58       --------->At4g35610<---------ZAT2<---------ARR14(2)     <---------ARR14(2) ---->ANAC46       <------ZmHOX2a(1) --------->DEAR3(1) ------>ZmHOX2a(2)    --------->ARR14(2)   aagacaaagaactttgtaataggagatgagaaggtctcgccgagcagctggagaaggatcggaaacgcgttctatatcggatcggagctgcttcaaggtc  5209700                                                                                   --------->GLK1(1)                                                                                   <---------ZAT2                --------->ZAT2                                  ==================HOX2a_HOX2a                <---------At4g35610              --------->ANAC55(2)               --------->ZAT2    ------>ZmHOX2a(2)                            <---------ANAC46               ------->GAMYB   <------ZmHOX2a(2)                         <---------MYB52(2) <------ZmHOX2a(1)  <---------At4g35610  --------->ARR11(3)                      ---------->DOF2 --------->LBD16      --------->ANAC46  <---------ARR14(2)                  <------MYB46(1)    <---------ANAC58    --------->MYB52(1)  --------->ARR14(2)                  <------MYB83       <---------ANAC58   <---------WRKY12  <---------ARR11(3)                 --------->MYB46(2)  <---------ANAC46  <------ZmHOX2a(2) -->ARR11(3)    --------->At4g35610  --------->MYB111(1)<---------LBD16   --------->ARR11(3)        - ---ARR11(3)    ----------->RAV1(2) <--------P --------->MYB52(1)         <---------ARR11(3)       <-   tcgagatcgtcgtctataagctgagcctcgcgctcagagtaggtgaaagtaacgtagttgcggagaggacggtagagatcaacggagctcgtcttcttct  5209800                                                       ------>ZmHOX2a(1)                                                       ===============HOX2a_HOX2a                                                   <---------ARR11(3)                                            <-------GAMYB                                           <---------MYB46(3)                                          <---------ANAC46                                          <---------DEAR3(1)        --------->ANAC58                  <---------DREB2C(2)        --------->ANAC58                  <---------RAP2.6(2)      <---------ANAC58                    <---------ANAC58      <---------ANAC46                    <---------ANAC58        <----------DOF2      <---------ANAC58            --------->ANAC58 <---------ARR14(2) -------->ATHB12                  --------->ANAC58 --------->ARR14(2)        <-----------GT1 --------YAB1                 >>>>>>>>>TBF1<---------DEAR3(2)  ------>ZmHOX2a(2)             <-------   catgaatggcgagcatcagattagagagcgaagaagaagccatggcggttcaaaatcctcttcgatcgctcttccgatttttctaattttcttcgatttt  5209900                  <------------CBF                <---------YAB1                ------>ZmHOX2a(1)                --------->TOE1(2)                =============================HOX2a_HOX2a    ------>NtERF2               --------->TOE2(3)                ------>ZmHOX2a(2)                         <---------ANAC46             <------ZmHOX2a(2)                <---------ARR14(2)                     --------->MYB52(1)            --------->ARR14(2)                --------->ARR11(3)                  --------->YAB1            <---------ARR14(2)                --------->ARR14(2)           ------>ZmHOX2a(2) --------            ------->TEIL                     =====================================HOX2a_HOX2a<-------          *TSS------>ZmHOX2a(2)              <------ZmHOX2a(1)       =============HOX2a_HOX2a--------    --------->TOE2(3)                 ==============HOX2a_HOX2a      ------>ZmHOX2a(1)    <---------ANAC58    <---------ANAC58                  ------>ZmHOX2a(2) --------->ANAC58 <---------ARR11(3)  <-------    <---------ANAC58                --------->ARR11(3)  --------->ANAC58 --------->ARR11(3) --------- ---DOF2 <---------WOX13(1)       <---------YAB1============================HOX2a_HOX2a   <---------ANAC58   tggtttccttgatggatccttattgactaagagaagatgatcgtgaaggatcgtgagaacgacaccaagtcctgtgatcttctatgaaaacggcgtgcag  5210000                                                                                                 ----                                             <---------LBD16                                   ======                                       <----------DOF2                                     <---------DAG2                                    <---------TOE1(3)                                --------->HSFB2a(2)                                   <-----------GT1      <---------AHL20(2)          <---------LBD16 ->ZAT18                       <----------DOF2         --------->AHL20(2)          <---------ANAC46 --ZAT14                      <---------ANAC58         <---------AHL20(2)    <---------AHL20(2)------ ->ZAT14   >>>>>>>>>GT-1      <---------ANAC46   <----------DOF2             --------->AHL20(2)------ --ZAT18<---------MYB46(3)    <---------ANAC58 --------->LBD16         ----------->GT1     <--------- >ALFIN1----------->GT1<------ZmHOX2a(2)   <-----------GT1 <-----------RAV1(1)<---------AHL20(2)<----   tctaatttagtggttaatacagtcgatcaatggcttttaagcttttttccgcgttaattaaatgtggcaacgatggtgatttattttgtggaacttttcc  5210100 --------->YAB1                       --------->ARR11(3) -->ZmHOX2a(1)             <---------AHL20(2) ================================================================================MADS_MADS ----------->AG         <---------ARR11(3) ----------->AGL1       <---------AHL20(1)                            ---------->DOF2 -DOF2                  --------->AHL20(1)                       <---------------AGL15    ----------- -----MYB59       <-----------GT1     <---------ARR11(3)         --------------->AGL15  ---------->DOF2   taattagaaacatgtctaattcacaatattttttggtataaatcttcttggtatatgtagaaattttctattgaaagtagaagaaatatgcaaagtatat  5210200                                                   --------->YAB1                                                  <---------ATHB12                                                 --------->ANAC58                                                 --------->ANAC58                          --------->YAB1    ----------->HVH21                         <---------ATHB12<---------AtMYB61       <---------AHL20(2)                   --------->ZAT6      <---------ANAC46          --------->AHL20(2)                 <                 <---------ARR11(3) <-----------RAV1(1)       <---------ZAT6              <---------ANAC46 >GT1        --------->YAB1   ---------->DOF2   --------->WOX13(1)<---------AHL20(2)   --------->GLK1(2)   agagcatggacattaacatgatcactaatcaaaaaagaatgttgtggtgacaatcaacacagtagtattaatttttaagggactacaaaattctgtgtgt  5210300                                           <---------ICU4                                           --------->YAB1                                    ---------->DOF2                             <---------ANAC58                                                  <<<<<<                             <---------ANAC46                                                <-------                             <---------ANAC58   <---------ANAC46                         <---------ARR11(3)                          <----------DOF2 --------->ICU4               --------->ANAC46  --------->ARR14(2)                         <---------HSFB2a(1) --------->ICU4 --------->At5g28300         <---------CCA1(2) ---------YAB1         <------ZmHOX2a(1)--------->YAB1     ----------->GT1         <---------ARR11(3)   ttatgaattagagaggccttgaagaggactttcgtatcaaaagaataatgatgtgaagaaacagtaaaattatacgataatacaagaactatatctgtca  5210400  Previous    Next  AGI:  At1g15130.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to ALG2-interacting protein X [Nicotiana tabacum] (GB:BAD15108.1); similar to hypothetical protein OsI_033019 [Oryza sativa (indica cultivar-group)] (GB:EAY79060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42232.1); contains InterPro domain BRO1 (InterPro:IPR004328); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 5205997    to: 5209910    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15140.1    Description:  oxidoreductase NAD-binding domain-containing protein. similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.3); similar to ATLFNR2 (LEAF FNR 2), NADPH dehydrogenase/ oxidoreductase/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.1); similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42229.1); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Pheno Range:  from: 5210201    to: 5212344    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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