Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 ------>ZmHOX2a(2)                                                                               =================HOX2a_HOX2a                                          <---------ANAC58                    --------->CCA1(2)                                          <---------ANAC46                    <------ZmHOX2a(2)                                          <---------ANAC58                    ==================HOX2a_HOX2a                                         ------>NtERF2       --------->At4g35610   ---------->DOF2                                      --------->At4g35610  --------->YAB1    --------->ARR14(2)                                      <---------At4g35610  --------->ATHB12  <---------AGP1                                --------->ANAC58          --------->ICU4     <---------ARR11(3)                                --------->ANAC46          <---------ATHB12   --------->ARR11(3)            --------->ANAC46    --------->ANAC58        --------->WOX13(1)   --------->AGP1            --------->ANAC58<---------MYB55(2)       --------->ANAC55(2)     <---------ARR14(2)            --------->ANAC58--------->MYB46(3)       --------->ANAC58       <---------CCA1(2)-------- ------->ZAT14   <------ZmHOX2a(2)  <---------ZAT14  --------->ANAC46 ---------->DOF2    <------ZmHOX2a(1) --------ZAT14  <---------ARR11(3)  --------->ZAT14  --------->ANAC58--------->AtMYB61  <----------ID1   gtggagagagaaacacgagatcaaatccctcccaacgctacgctgcgttttagagacgcaatcatcggaaaccaaagcagatctacaaagaggacaagtg  5193800                                                 <---------DDF1                                                --------->ETT(2)                                                <<<<<<<<<<bZIP19                                                <<<<<<<<<<bZIP23                                                <---------ETT(2)                                                <---------bZIP60(1)                                              --------->REM1(2)                                             --------->ALFIN1                                            ------->MYC2                                            <-------MYC4                                            ------->MYC4                                            <-------MYC2                                            ------->MYC3                                            -------->ABF1                                            <-------MYC3                                           --------->TGA1a                                           <---------ANAC55(2)                                           <---------TGA1a                                           --------->ANAC55(2)                                           <---------O2                                           =================================================bZIP_DOF                                          ------------>OsbHLH66  <---------ALFIN1                                         <---------ALFIN1 --------->At4g35610   --------->TOE2(3)                    ------>ZmHOX2a(1)  ----------------->PIF3(1)------>ZmHOX2a(1)<----------DOF2    -            --------->ANAC58        <---------HSFB2a(2)   --------->ZAT2      ------>MYB83        ---            --------->ANAC58        --------->HSFB2a(2)   <---------ZAT2 <-----------GT1          --- --->GT1 <---------REM1(1) <---------ALFIN1--------->O2   <---------At4g35610 ------>MYB46(1)     ---   aaattgaattgatgaagccatccttccaaacacttcttgtggaacacgtgtcgacattccagcttcctcacctcttcaccttcctttaacttcgacaaac  5193900                        --------->AtMYB61                        --------->DEAR3(1)                        <---------ALFIN1                       --------->ZAT2                     --------->DEAR3(1)                     --------->AtMYB61                     <---------ALFIN1                   <---------ATERF1(1)                   ------>NtERF2                  <---------ALFIN1                  <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxsmallRNA(s)                  --------->DEAR3(1)                 --------->ATERF1(1)                 --------->ERF1                 <------NtERF2                <---------ATERF1(1)                ------>NtERF2               >>>>>>>>>AtERF-7               >>>>>>>>>>AtTINY2               >>>>>>>>>AtERF-5               >>>>>>>>>AtERF-4               --------->ANAC46               >>>>>>>>>AtERF-3               --------->ANAC58               --------->RAP2.3(2)               <---------ATERF1(2)               >>>>>>>>>AtERF-1               --------->ANAC58               --------->DEAR3(1)               >>>>>>>>>AtERF-2               --------->RRTF1(2)               --------->RAP2.3(3)               --------->ATERF1(2)               --------->RAP2.6(2)               --------->RRTF1(3)              --------->DEAR3(2)              --------->ORA47(2)              --------->RRTF1(1)              --------->RAP2.3(1)          <---------TOE1(1)             <---------ATERF1(1)          --------->SPL7             <---------RAP2.3(1)  <---------ABI4(2)             --------->ZAT2  ----------->HVH21             <---------At4g35610  <---------SPL7             --------->At4g35610  <---------ZAT14             --------->ABI4(2)    --------->ZAT14 --------->MYB52(1)    ------>ZmHOX2a(2)             ------>NtERF2  <-----------HVH21     <-----------GT1       <---------DEAR3(1)            <---------ARR14(2)    --------->ABI4(1)                   --------->ARR14(2)            --------->ARR14(2)<---------ALFIN1  <---------KAN4(2)     <---------ARR14(2) ----------->RAV1(1)--------->MYB46(3)  <---------MYB52(1)        <---------ZAT2 -------->ANAC46<---------RAP2.6(3)<---------ALFIN1 <---------------------WRI1               <------- ------>ANAC46<------NtERF2--------->ANAC46<---------TOE2(1)      <---------At4g35610        <------- ------>ANAC58--------->ATERF1(1)--------->DEAR3(1) <------------MYB.PH3(1)            <---------YAB1 ------>ANAC58--------->ERF1<-----------TGA1   --------->YAB1     --------->At4g35610  <-----------RAV1(1)   acacaacacaatcggagccgccaccacctccgtcaccgcaccggtacgagaataaccgattcaaactaagctgatcggcgagaacgattatgttggctag  5194000                                                                              <-------GAMYB                                                                            <---------AtMYB61                                                                      ===============================                                                                      ------>ZmHOX2a(2)                                                                     ================================                                                                    <---------ARR11(3)                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                    --------->ARR11(3)                                                                ---------->DOF2<--------P                                                               <------ZmHOX2a(1)<---------MYB46(3)                                                               =============HOX2a_HOX2a                                    --------->ARR14(2)         ==============HOX2a_HOX2a                                    <---------ARR14(2)      =================HOX2a_HOX2a                                   <------ZmHOX2a(1)        ================HOX2a_HOX2a     <--------                            ----------->ARR10               <------ZmHOX2a(1)<---------MYB46(3) <---- --ANAC58              <---------ANAC46             ----------->HVH21<------ZmHOX2a(2)     <------NtERF2 --ANAC58             <---------LBD16             --------->ALFIN1<---------HSFB2a(1)    <---------DEAR3(1)   tcccgatgctatagagacatcgtctacggggagattaggatttgatttagaggtgagacggaggaggaaagatcggagatggttgatgaagacggcgagg  5194100                                             ----------->HVH21                                             --------->WRKY12                                           <---------At4g35610                                           --------->At4g35610                                           <---------ZAT2                                           --------->ZAT2                                   <-----------HVH21                                   <-----------TGA1                                  <---------TGA2(1)                                  --------->TGA2(1)                                  --------->TGA1a                                  <---------O2                                           <<<<<<<<<TBF1                                  --------->O2                                        <<<<<<<<<TBF1                                  --------->ANAC58                              <<<<<<<<<TBF1  <<<<<<                                  ========================================bZIP_DOF <<<<<<<<<TBF1  *TSS                                  <---------TGA1a                            <<<<<<<<<TBF1  <<<<<<<<<TBF1                                  --------->ANAC58                        <<<<<<<<<TBF1<xxxxxxxxxxxxx                                  --------->bZIP60(1)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <---------ANAC55(2)                  <<<<<<<<<TBF1<xxxxxxxxxxxxxxxx     <------ZmHOX2a(1)            --------->ANAC55(2)               <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxx ==HOX2a_HOX2a                    --------->ANAC46                <------------------------ANAC81 <<< ==HOX2a_HOX2a                    <---------bZIP60(1)          <----------DOF2<xxxxxxxxxxxxxxxxxxxxxx -ANAC46                          --------->bZIP60(2)      <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --ZmHOX2a(1)                    <-----------STF1   --------->REM1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   agagagaggagcataagagggattgaatcggaagagacgtcacttagctgaccttgtagccccatctttcttcttcttcttcttcttcttcttcttcttc  5194200                                                                                    --------->AHL20(2) <<<<<<<<<TBF1                     <----------DOF2                              --------->AHL20(2) <<<TBF1                     <---------At4g35610                              <----------DOF2 xxxxxxxxxxsmallRNA(se3)     --------->At4g35610                   <---------MYB52(1)<---------AHL20(2) xxxxxxxsmallRNA(se3)  <---------AHL20(2)                         <----------DOF2   <---------AHL20(2) xxxxsmallRNA(se3)     <-----------TBP <---------ANAC58 <------------CBF     <---------DAG2 <<<<<<TBF1            --------->AHL20(2)             <---------YAB1      <-----------GT1        ---- xsmallRNA(se3)      <-----------TBP   <---------ANAC58--------->ATHB51<----------DOF2           <---   ttcttcttctctctctgttttctatatatatagctgtctttgcttaacctatacacattattgtgttcctttactttcaccttttattaatttcattact  5194300                                                                                         --------->DAG2                                                           <---------DAG2               ---------->DOF2                                                           <----------DOF2             <---------AHL20(2)                                                       <---------ARR11(3)           <---------AHL20(1)                                               <---------ICU4                       --------->AHL20(1)                                               --------->ATHB51                    --------->AHL20(2)                                               --------->AHL20(2)              --------->AHL20(2)                                               <---------AHL20(2)             <---------AHL20(2)                                              --------->ICU4                 --------->AHL20(2)                <---------AHL20(2)         <---------AHL20(2)                <---------AHL20(2)        --------->YAB1                     --------->AHL20(1)            <---------AHL20(2)     --------->WOX13(1)                   --------->AHL20(2)            <---------AHL20(2)  <-----------HVH21               ---------->DOF2      --------->ARR11(3)--------->AHL20(2) ----->ZAT14    --------->AHL20(2)--------->MYB52(1) <---------TOE2(3)  --------->AHL20(2) ------ZAT14 <----------DOF2 <---------YAB1--------->AHL20(2)           <---------AHL20(1)  ---------   aaactgtcaattagacttttaattttggtttattactaaaggaaattaattatttaagatacttttccatacaatttaatttaaaatatataaagtggat  5194400                                                <--------HAHB4                                               <---------YAB1                                               --------->ICU4                                             <---------ICU4                                       --------->ANAC58                                       --------->ANAC58                                      --------->SPL7                                    <---------SPL7                                  <---------------AtSPL8                           --------->AHL20(2)                        --------->ANAC46     --------->YAB1                <------MYB83                        --------->ANAC58    --------->ICU4                 <------MYB46(1)                        --------->ANAC58    <---------ATHB12       <-----------------AG<-----------GT1                --------->AHL20(2)--------------->AtSPL3    <---------CCA1(2)    <---------AHL20(2)                <---------AHL20(2)<---------------AtSPL3  <---------ANAC46 ----------->GT1<----------                <---------AHL20(1)<---------TOE2(3)  <-----------RAV1(1)  --------->MYB59 -----------            <---------AHL20(2)    <---------YAB1<---------ICU4     ================================== >ALFIN1   <---------AHL20(2)  <---------AHL20(2) <---------YAB1<---------AHL20(2) <---------AHL20(2)   gtatagttgattttttattttatttcaagctatattatggtacgaaatcattattatgttgcatatattaatcgatttggtatatttttttacaaaatac  5194500                       <---------AHL20(2)                     <---------YAB1                   <---------ICU4                   --------->YAB1                  <---------YAB1                                         <---------AHL20(2)               <---------AHL20(2)                                      --------->ANAC55(2)            <---------RVE1(1)                                 ----------->HVH21           --------->ARR11(3)                                 ----------->TGA1 -----AGL15<---------GLK1(2)<-----------GT1           <-----------GT1  ----------->GT1 ---->AGL15<---------ARR11(3)                     <---------YAB1 <---------YAB1   <------ZmHOX2a(2) - =====MADS_MADS<---------YAB1 --------->MYB46(3)  <---------AHL20(2)   <---------ANAC55(2)       ----   agaagaatacaaagatttttattattattttgaccacctatttttgtcaatttttattaccagtctgacgattatgtaatttagatcaaatgaagttagt  5194600                           ----------->HVH21                          <-------MYC3                          ------->MYC3                          ------->MYC2                         --------->TGA1a                         <---------O2                                      --------->ANAC55(2)            --------->ARR14(2)                --------->CCA1(2)        <-----------TGA1            <---------ARR11(3)    <---------MYB52(1)                  --------->ANAC58            <---------ARR11(1)   ----------->GT1                      ==============================bZIP_DOF           ------>MYB83  --------->O2         <------ZmHOX2a(2)       --------->ANAC46           ------>MYB46(1)<-------MYC2       --------->AGP1           --------->O2           <---------ARR14(1)<---------ARR11(3)      <---------AHL20(2)<-----------HVH21           <---------CCA1(2) --------->ARR11(3)------>ZmHOX2a(2)      --------->TGA1a         <---------MYB59 <---------TGA1a<-----------GT1             --------->MYB52(1)   <---------ICU4        --------->ANAC46    --------->ARR11(3)     ------>MYB83   <---------AHL20(2)    --------->ANAC58    --------->ARR14(2)     ------>MYB46(1)  --------->ICU4         --------->ANAC55(2) <---------ARR14(2)   --------->AtMYB61  --------->AHL20(2)     --------->ANAC58    <---------AGP1<-----------GT1 <---------ANAC55(2)<------ -------->YAB1           <---------ANAC55(2) <---------ARR11(3)--------->ANAC46 <-----------GT1 ------->GT1<---------ARR14(2) ------>ZmHOX2a(2)    --------->AHL20(2)--------->ANAC58   <----------DOF2   agtaataaataccaaatctttttatacacgtgatctggtattttacagatctgattttatattacaaaccaaacgtcacttatttctctctcttttttaa  5194700  Previous    Next  AGI:  At1g15100.1    Description:  RHA2A (RING-H2 finger A2A); protein binding / zinc ion binding. Identical to RING-H2 zinc finger protein RHA2a (RHA2A) [Arabidopsis Thaliana] (GB:Q9ZT50); similar to RHA2B (RING-H2 FINGER PROTEIN 2B), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42212.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5193421    to: 5194198    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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