Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->ARR11(1)                                     --------->ARR14(2)                                    <---------At4g35610                                    --------->At4g35610                                ------>NtERF2                                <-----------HVH21                               --------->bZIP60(2)                               --------->O2                               <---------bZIP60(1)                               <---------ANAC46                             <---------RAP2.3(1)                             <---------ATERF1(1)                           <---------At4g35610                           --------->At4g35610                        --------->At4g35610                        <---------ZAT2--------->ARR14(1)                        --------->ZAT2--------->GLK1(2)                                             -                  <---------At4g35610<---------ARR14(2)                                           <--              ----------->RAV1(1)<------NtERF2                                                    ---             --------->MYB46(3)--------->bZIP60(1)                      --------->ANAC58          ---           ----------->RAV1(1)--------->RAP2.3(1)                       --------->MYB46(3)        <--         <---------At4g35610--------->DEAR3(1)                     <---------ATERF1(1)       --------         <------NtERF2  <---------At4g35610                       <---------RAP2.6(2)        --------         --------->At4g35610<---------DEAR3(1)                    <---------DEAR3(1)        <--------      <------NtERF2    ----------->RAV1(1)                       --------->RAP2.6(3)    <------ZmHOX2a(1)     ------>NtERF2--------->At4g35610<---------GLK1(2)           --------->SPL7      <------ZmHOX2a(1)    --------->ALFIN1 <---------At4g35610                        <------ZmHOX2a(1)    ================  <---------MYB46(3) --------->ZAT2----------->ARR10           <---------SPL7 --------->ANAC58    <--  <---------DEAR3(2) --------->At4g35610  ------>NtERF2   <---------LBD16     --------->ANAC58 ------ <---------DEAR3(1) ----------->RAV1(1)<-------TEIL    <---------At4g35610  <---------ALFIN1--------- -------->HVH21  ------->GAMYB<------NtERF2         <---------At4g35610 --------->ANAC58=============   acgacggtggcagcaacaacagcagcagcagcggcgtcagattcggcctgagtcttctgcttcggaggacggccacgaccacgcttaggaggagcatctg  5139000                                                                                            <--------                                                                                          <------NtERF2                                                                                         ------>NtERF2                                                                                         <---------RAP2.3(1)                                                                                         <---------ERF1                                                                                         <---------RRTF1(1)                                                                                        <---------RRTF1(3)                                                                                        <---------ANAC46                                                                                        <---------bZIP60(1)                                                                                        <---------O2                                                                                        <---------RRTF1(2)                                                                                        <---------ATERF1(2)                                                                                        <---------RAP2.3(3)                                                                                     ----------->HVH21                                                                                    <-----------HVH21                                                                                   --------->ALFIN1                                                                                 ====================MYC_MYB                                                                                 --------->TGA1a                                                                                 ====================MYC_MYB           --------->AHL20(2)                                                    --------->O2 ----->ZmHOX2a(2)                                                            <-----------TGA1<------NtERF2 -------ARR11(3)                                                             <-----------HVH21 ------>ARR14(2)                                                        --------->At4g35610 <-------- ------>ARR11(3)                                                   <---------ZAT2<---------O2<-------GAMYB -------AGP1                       --------->WRKY12                --------->ZAT2<---------TGA1a ->At4g35610                       ----------->HVH21               --------->At4g35610  <---------DEAR3(1) --->RAV1(2)                     --------->At4g35610             <--------P--------->At4g35610   <--- -ARR14(2) <---------AHL20(2)    <---------At4g35610    <--------P <---------At4g35610  --------->ATERF1(2) ======HOX2a_HOX2a               --------->ZAT2         ===================================MYC_MYB -------ARR14(2)            <---------ICU4         <---------At4g35610  <---------At4g35610<---------DEAR3(1) --->HSFB2a(2)              --------->ATHB12   <---------------AGL15    <---------ZAT2  <---------RAP2.3(2) >GLK1(2)  <---------YAB1  --------->ICU4      --------------->AGL15    --------->ZAT2  <---------RAP2.6(2) ======HOX2a_HOX2a         <---------YAB1<---------MYB52(1)      ==========================MYC_MYB   gatctggtttcatataattgttcttcaccatgattagctgaccggttttcttcatctggttgagatggtagctgagcagcgtcatgtgtgacggcggtag  5139100         <---------ZAT18         --------->ZAT18      <---------ANAC46                              <---------YAB1  <-------GAMYB                                  <---------MYB52(1) --------->MYB52(2)                             <---------RAP2.6(3) <---------MYB46(3)                   <-----------RAV1(1) -MYB46(3)                         <---------MYB52(1)                                 --------->At4g35610 -DEAR3(2)                    --------->YAB1 <---------At4g35610                   <---------YAB1 ------ZAT6                  <---------ATHB12------>NtERF2      <------ZmHOX2a(1)--------->YAB1   agtttgttgagtcgactcgatgtgcttagcaatcgtcgttttgttgcagccgttcttatcgttcaaggactcaatcgcttccattatcatctaaacacaa  5139200                                                      ------->TEIL                                                    <---------ZAT14                                                    --------->ZAT18                                                    <---------ZAT18   --------->DAG2                <                                                   --------->ALFIN1   <---------TOE2(3)           <--                                                  --------------->AtSPL8                          ---                                                  <---------------AtSPL3 --------->ALFIN1        <---     --------->YAB1                              <---------ANAC46 <------ZmHOX2a(1)           <------     --------->TOE2(3)                   --------->ARR11(3) --------->At4g35610             ---------     ------->GAMYB                       <---------ARR11(3) <---------At4g35610        <---------LBD16    --------->MYB46(3)                  <---------RVE1(1)   ----------->RAV1(2)       --------->MYB52(1)   atttcaaccaaaatttcagaaactaaattgagagagattgagagattttaggggtgtacttcacctgaggataaggtgggagagaaaacgacggaagttc  5139300         ------->TEIL         <---------ARR11(1)         <-----------ARR10         --------->GLK1(2)         --------->ARR14(2)         <---------ARR14(2)        <---------ARR14(1)        <---------CCA1(2)      --------->ANAC55(2)      <---------ANAC55(2)      <---------ANAC58      <---------ANAC58   ------->TEIL                                                            <---------TOE2(3) ---------YAB1  <---------At4g35610                                     <---------REM1(1) -------At4g35610                            <-----------HVH21       --------->ALFIN1 ------>At4g35610           <---------ANAC46--------->bZIP60(2)    <---------At4g35610 ------YAB1     <---------ZAT2         --------->ANAC58            <---------ANAC46           <------ZmHOX2a(1) ---ARR14(2)    --------->At4g35610    --------->ANAC58       --------->ALFIN1     --------->GLK1(2) >HSFB2a(1)     --------->ZAT2    <------ZmHOX2a(2)         --------->ALFIN1      <---------GLK1(2)   tgatgaatgcgtatctgaagctgagccatggtggagatcgaaggccatgtcaagcgtagagagtgtgtgaggtgatgaaggaaggaatctgtgtgaggag  5139400                                                                        <------MYB83                                                                        <------MYB46(1)                                                                      <--------P                                                                      --------->ALFIN1             --                                                                     <-------GAMYB               ----                                                                    <---------DEAR3(2)           ----                                                                    <---------MYB46(3)      <--------P                                                                 ------------>AtMYB77   <---------ANAC46                                                                ----------->HVH21       <---------ANAC58                    --------->DAG2                             ------>ZmHOX2a(2)        <---------ANAC58        --------->ANAC58                       <-----------GT1--------->At4g35610       <---------ANAC55(2)        --------->ANAC58           <---------ICU4             <---------At4g35610       --------->ANAC55(2)       --------->DAG2             <---------YAB1             <---------AGP1            <---------LBD16      ---------->DOF2      *TSS<---------YAB1  <---------AHL20(2)--------->MYB52(1)   --------->MYB52(1) ----------->GT1   ---------->DOF2--------->ICU4        <---------ZAT6<---------MYB52(1)<---------ANAC55(1)   ggattttaaaaagcaatttgggaaagtggttttctcattattctcatattaacttgtagtgttgatctgacggttggggttttcaaacttacgggttgat  5139500                                           <---------ANAC58                                           <---------ANAC46                                           --------->O2                                           <---------ANAC58                                 ------>MYB46(1)                                           <---------O2                                     ------>MYB83                                           --------->TGA1a                                --------->TOE2(3)                                           <---------bZIP60(2)                            <---------MYB46(2)                          --------->HSFB2a(2)                                             <---------MYB59                          <---------HSFB2a(2)--------->ALFIN1                            <---------ANAC55(2)                      <----------DOF2      <---------TGA1a                      --------->TOE2(3) --------->MYB46(3)   ===============================bZIP_DOF                   --------->TOE1(3)   - ------->MYB52(1)   --------->At4g35610 ----------->TGA1           --------->At4g35610   --------->ANAC55(2) -->ZmHOX2a(2)      <---------At4g35610 ----------->HVH21          <---------At4g35610 <-----------GT1 ----->MYB46(3)     --------->ZAT2<------ZmHOX2a(1)                --------->ZAT2  --------->AHL20(2)   ccaacggctctgagtttatagcagctttctcgagcaggattactgacgtggacatatgggaatgacttctgctgactattacccttaaattacctaattc  5139600                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                    <----------ID1 <---------ANAC58                                                                    --------->ANAC58            -----                                                           <<<<<<<ZML2        --------->ANAC46 <-----               <---------AHL20(2)             --------->ZAT2        --------->ANAC46  <---------ARR14(2)           <----------DOF2         <---------MYB46(3)   <---------HSFB2a(2)   <---------ANAC55(2)     <---------ATHB12            <---------MYB52(1)     --------->HSFB2a(2)   --------->ANAC55(2) ----->ZmHOX2a(1)      --------->MYB46(3)     <---------ZAT2        --------->ANAC58  --------->ARR14(2)   tcctccaatcttccttttttattcaacgaatggccattggttcagcctagctggattactagaacagaaaacgacatactacgtagcgtttttgctaatc  5139700         <---------AHL20(2)         --------->AHL20(1)        <---------AHL20(2)                                                  <---------AHL20(2)        --------->AHL20(2)                             <-----------GT1      --------->AHL20(2)<------ZmHOX2a(1)       <---------AHL20(1)                   <----------DOF2      --------->YAB1            --------->LBD16       <---------AHL20(2)                <---------ARR11(3)     <---------ATHB12          --------->LBD16       --------->AHL20(2)      ----------->GT1     <---------AHL20(2)  <-------TEIL  --------->WOX13(1) ---->YAB1              --------->ZAT6   --------->ARR11(3)  --------->AtMYB61      <---------ICU4 ----ATHB12       <---------TOE2(3)     <---------CCA1(2)   --------->MYB46(3)  <---------AHL20(2) <-   atatttcaaattattttgttaatgtaacacaatgagttatatatatctttcattttttttccaccaatgaaaattcatttatataatcaatcccgaggag  5139800                         <---------AtLEC2                     --------->CCA1(2)                    <---------GLK1(2)                    <---------ARR14(2)                    --------->ARR11(1)              <-----------GT1                    <---------ARR11(3)             <---------YAB1                    --------->ARR14(2)          --------->AHL20(2)                    --------->ARR11(3)          <---------AHL20(2)        --------->YAB1          --------->At4g35610            --------->bZIP60(1)   --------->ANAC58         ---------->DOF2 ---------DOF2    ----------->ARR10      <---------bZIP60(1)   --------->ANAC58 <----------ID1   tctttctctattagcagaacaagatttgcaagactagaagatgatgtgattttattactactcacaaacaatagaatcatatgagacaaataaagcattt  5139900  Previous    Next  AGI:  At1g14900.1    Description:  HMGA (HIGH MOBILITY GROUP A); DNA binding. similar to HON5 (HIGH MOBILITY GROUP FAMILY A 5), DNA binding [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to high mobility group protein I/Y [Brassica napus] (GB:AAF22135.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain High mobility group proteins HMG-I and HMG-Y; (InterPro:IPR000116); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 5138329    to: 5139427    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g14910.1    Description:  epsin N-terminal homology (ENTH) domain-containing protein. Identical to Putative clathrin assembly protein At1g14910 [Arabidopsis Thaliana] (GB:P94017;GB:Q8L644;GB:Q9LQU0); similar to epsin N-terminal homology (ENTH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42321.1); contains InterPro domain Epsin-like, N-terminal (InterPro:IPR013809); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Clathrin adaptor, phosphoinositide-binding, GAT-like; (InterPro:IPR014712) Range:  from: 5139707    to: 5143684    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version