Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  xxxxxxxxxxxxxxxxxxxxx                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     --------->HSFB2a(2)                                                               <---------------AGL15                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               --------------->AGL15                                                              ----------------->AGL3                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <-----------------AGL3  <---------YAB1                                                              ----------------->AGL2  xxxxxxxxxxxxxxx                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <------ZmHOX2a(2)                                                     <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                <---------ANAC58     <---------HSFB2a(2)     <-------                                                <---------ANAC58   <---------AHL20(2)<xxxxxxxxxxxxxxx                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ZAT2                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ZAT2                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------At4g35610     <------ZmHOX2a(1)                   <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxx --------At4g35610                       <---------DAG2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  -------- ------->At4g35610                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxx --------ZAT2                     <-----------GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <------ZmHOX2a(1) ------->ZAT2       --------->AHL20(2)------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxx   gagctgaggagcttgaagacgttttaatatggattttttcctccttttttccttgagatgcctctctatttatagaaaaactaagctggtgataggatca  5099200                <----------DOF2               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <----------DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ------>MYB46(1)    ------>MYB83<---------DAG2  <---------MYB59        <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(s) xx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(le3)  <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --ARR11(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        ------------>CBF xxxxxxxxsmallRNA(s2)   <---------ANAC58  --------->KAN4(2)                --------->ZAT18 xxxxxxxxxxxxxxxsmallRNA(le3)    --------->ATHB12                          <---------ZAT18 ->ARR11(3)    xxxxxxxxxxxxxxxx>smallRNA(s)<---------YAB1               <---------ANAC58 xx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)     <------NtERF2 <---------ANAC58 xxxxxxxxxxxxxsmallRNA(le3)     <---------YAB1  --------->ATHB12        <---------ANAC46   tggaccaacttttatgggctttttgggcttgatgttgattagtttattcttgatttgggccgagctaaaatgaggggtgcaatccatctccaacatgccc  5099300                <-----------GT1               <<<<<<<<<<GT-3b          --------->LBD16         <---------ANAC46  <---------GLK1(2)             --------------->AtSPL8         <---------ANAC58 ---------->DOF2                <---------------AtSPL8         <---------ANAC55(2)         --------->TOE2(3)   <---------------AtSPL3         <---------ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->ANAC55(2)        --------->YAB1       --------->DAG2         <---------ANAC55(1) --------->At4g35610       ---------->DOF2     <----------DOF2    <---------HSFB2a(2)       <-----------GT1          <---------ANAC58    <---------HSFB2a(1) --------->HSFB2a(2)  <---------MYB52(1)      <-------TEIL    --------->HSFB2a(1)--------->LBD16     ----------->GT1      --------->AHL20(2)  ------>ZmHOX2a(1)   <---------At4g35610 <---------LBD16  ----------->RAV1(1)  <-------TEIL  <---------ANAC58   catggagctttccgtatttttcttccccagaagctcaaacatcaacagttatttactaaaaggtacttaaatacatggcttaattcctacaaaattccac  5099400                                                                               <----------DOF2                                                                              --------->TOE2(3)                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)                                                                        <---------AGP1                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                      --------->ANAC58  <---------ARR14(2)                        --------->RVE1(1)             --------->ANAC58  --------->ARR14(2)                    --------->AHL20(2)                ----------->GT1   <---------ARR11(3)          <        --------->AHL20(2)                           --------->DAG2     --------->ARR11(3)        <xx        <---------AHL20(2)                          ---------->DOF2     --------->AGP1           <---       <---------AHL20(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>ZmHOX2a(1)             ----       <---------AHL20(2)<---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-------       --------->AHL20(2)--------->ARR11(3)    ----------->GT1     ==============HOX2a_HOX2a---------  ------------>CBF<----------DOF2        --------->At5g28300       =============HOX2a_HOX2a----------   tacttgcaatttaattcatacttttaatatctcaaatcgaaactgtaactggagaaaagcaaaaacctcctatagatcttcctttaaactactataaaat  5099500                            ------------>CBF          <---------ALFIN1  <---------YAB1    <---------ICU4  <---------At4g35610     --------->YAB1     --------->ARR11(3)  --------->At4g35610------------>CBF        --------->ICU4 ---------ICU4      --------->YAB1           <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->AHL20(1) ------ICU4    --------->LBD16               <---------AHL20(1)              <-----------RAV1(1)  --- ----->YAB1   --------->ANAC46       ----------->RAV1(1)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<-----------GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >AHL20(2)--------->AtMYB61<-----------GT1  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --- ->TBP  <-----------HVH21--------->ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE2(3)   -----   catcatctcccatcacccccaaacacaattatcaatttccaccagaaaatattacacactctgaaaatggctgaagttgatgttgttgcaattccttcta  5099600                                                        <------MYB83                                                        <---------MYB46(3)                                                        <------MYB46(1)                                                       <---------AtMYB61                                                     <-------GAMYB                          --------->ANAC55(2)       --------->MYB55(2)                         ------                          <---------ANAC58          --------->MYB111(2)                      --------                          <---------ANAC58          <---------MYB46(3)                       <xxxxxxx             <----------DOF2                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------            <---------ANAC58                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->REM1(1)          ------->TEIL<----------DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ----------->RAV1(1) ------>ANAC58        xxxxxxxxxxxxxxxx>smallRNA(s)  --------->MYB111(1)            --------->ANAC58 ------>ANAC58        <---------DAG2      --------->ANAC46  <---------ATERF1(1)    --------->ANAC58 ----->DOF2 <---------ANAC58      ---------->ID1   <--------P<------NtERF2         --------->ANAC46   aagcaaactatgtagcttttgatgctttacgtcttggtcgctctactcaacaggttgttggtcgcctacttcgtttttgggatgctcgcaacatcaagaa  5099700                                                                                                    -                                          ----------->GT1                                          <-                                         --------->DAG2                                            <-                               <---------ANAC55(2)                                                 <-                               --------->ANAC55(2)                                                 <-                               <---------ANAC58                                                    --                               <---------ANAC58                                                    <-                            <---------MYB52(1)                                                     <- ---->DOF2                ------>ZmHOX2a(1)                                             <---------WOX13(1) ->ANAC58               ----------->RAV1(2)        <---------YAB1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(i)  ------>ZmHOX2a(1)---------->DOF2       <---------AHL20(2)     <---------AHL20(2) ->ANAC58  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->YAB1 <---------TOE2(3)  --------->ANAC55(2)   agatggccaattcatgggcatagtcctcctgttacttgatgaaaaagtaaatcatcttagatgtttaatgttttttttgtttcatatgtaattgatggcc  5099800     --------->ANAC55(1)                                                              <---------AtLEC2     <---------ANAC55(2)                                               --------->ARR14(2)     --------->ANAC55(2)                                 --------->ARR11(3)           <---------ANAC46   --------->ZAT6                <---------MYB52(1)     <---------At4g35610------>NtERF2 ------>GAMYB                   --------->LBD16         --------->At4g35610--------->LBD16 --------MYB55(2)              --------->ANAC55(2)   --------->ZAT2    <---------ARR14(2) --------MYB52(2)              <---------ANAC55(2)   <---------ZAT2   --------->GLK1(1)           <-- --------MYB111(1)         --------->ZAT18           --------->At4g35610  --------->ANAC46       <xxx --------MYB46(2)          <---------ZAT14           <---------At4g35610 <---------LBD16 --------->REM1(2) ------->MYB46(3)    --------->YAB1                 --------->ANAC46  <---------GLK1(1) ----------->HVH21 -----------MYB.PH3(2)     --------->ZAT14     <-----------GT1 <---------ANAC58       <---------ANAC58 --------MYB111(2)--------->TOE2(3)        <----------DOF2     <---------ANAC58       <---------ANAC58   aactaacacttaatttgtttcattaatagtgctccgtaatccatgcttttatcccagcagctcttgcttcacatttccgccaagttttgcgtgaaggcat  5099900                                                               <----------DOF2         ----------->RAV1(1)                                                  <------ZmHOX2a(2)                    ==============                                                  ============================HOX2a_HOX2a                                                  ====================HOX2a_HOX2a    ------>NtERF2                                                 <---------ARR11(3)               ----------->RAV1(2)              <------MYB46(1)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxx              <------MYB83         --------->ANAC58            ------>ZmHOX2a(1)  =================RAV          --------->MYB52(2)       --------->ANAC58         ------>MYB46(1)    <-----------GT1  -----       --------->TOE2(3)    <---------bZIP60(2)  --------->ARR11(3)        <---------MYB52(1)  <-----       --------->YAB1  --------->ALFIN1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ANAC46 -------ARR11(3)      ----------------------->TaNAC69(2)    ------>MYB83 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ANAC46   ----------->HVH21------>ZmHOX2a(1)       ------   aatcttcaatgttagtgggtttgaagtgggacgttgcacgaaactctacaagatcactgaccatccttttctcctccgttttctccctgccacaacgatt  5100000                                                               --------->TOE2(3)                                                               --------->TOE1(3)     ------>MYB83           <-----------RAV1(1)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       ================RAV                            <----------DOF2                ------>MYB46(1)       <-----------RAV1(2)                       <---------MYB59                    ----------->RAV1(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ANAC55(1)             --------->ZAT6   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->ANAC46              <xxxxxxxxxxxxxxxxxxxxxx ==================RAV                     <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) x>smallRNA(s2)                 <----------ID1  --------->ANAC58  ---------->DOF2  --------->AtMYB61 ---->ATHB12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC55(2)   --------->ARR11(3)          --- ----YAB1 --------->ARR11(3)    ----------->GT1 --------->ANAC55(2)   <---------ARR11(3)          --- --->ICU4<---------At4g35610   ----------->GT1  --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   attgaagtttcagatgttggccctacaattgagagggaaaaatttatgctacgtaactttgacaaccttcaagctcttgctaacaccaacattgaacttc  5100100  Previous    Next  AGI:  At1g14800.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G35280.1); similar to hypothetical protein 26.t00082 [Brassica oleracea] (GB:ABD65028.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 5099567    to: 5102553    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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