Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                        ------>ZmHOX2a(2)                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR14(3)                                                        <---------ANAC46              <---------ARR14(3)                                   --------->ARR11(3)   <---------ANAC58              <---------ARR14(2)       <----------DOF2 <---------ANAC58                 <---------ANAC58              --------->ARR14(2)       --------->TOE2(3)           <---------ARR11(3) <---------ARR11(3)              --------->ARR11(3)    <---------ARR11(3) <---------ANAC58    <----------DOF2                            <---------ARR11(3)    --------->ARR11(3) <---------ANAC46   <---------ANAC58                          ----------->ARR10 ------>DOF2        <---------AtMYB61     <---------ANAC58            ---------->DOF2 --------->AGP1 -->AtLEC2 <-----------GT1       ------->TEIL         --------->ARR11(3)          --------->CCA1(2)   aaagaacatctttaaaccagagatggtgtgtaatgaagctcttggctttggaacaatgtcttgttcaacttcaaaagccttgagataagatcttccatag  5097600                      <---------YAB1                      --------->ICU4                    --------->YAB1                   --------->ICU4                <------NtERF2               ------>NtERF2               --------->LBD16              ----------->RAV1(1)            ------>NtERF2           <-----------RAV1(1)         --------->ZAT2         <---------ZAT2                                                                    <---------ANAC58         --------->At4g35610                                                               <-------GAMYB         <---------At4g35610                                                               <---------ANAC58         ----------->RAV1(2)                                                              <---------MYB46(3)         =================RAV                                                          <----------DOF2        <-----------RAV1(1)                  --------->At4g35610                   <----------DOF2     <---------ARR14(2)                      <---------At4g35610                  <---------DAG2     --------->ARR14(2)            <---------TOE1(2)                           <---------ALFIN1 ------->DOF2--------->RAP2.3(1)--------->TOE2(1)              <-----------------------TaNAC69(2)   taaagacgttctgctgccgcagtgatgatcagcctcgtatgtctctcagatgtgaattgaacaatggcatagactcttggaccacctttctttggttgtc  5097700                                                                          <---------MYB52(1)                                                                     ================================         <---------ANAC58                                            --------->ANAC46         <---------ANAC58                                            --------->ANAC58         --------->ANAC55(2)                                         --------->ANAC58         <---------ANAC46                    <---------HSFB2a(1)     <-----------------AGL1         <---------ANAC55(2)                 <---------HSFC1(2)      <-----------------AG      <---------WOX13(1)                     --------->HSFC1(2) <---------At4g35610     <---------ANAC58                    --------->ANAC58     <---------ZAT18    <---------ARR14(2)     <---------ANAC58                    --------->ANAC58     --------->ZAT18    --------->GLK1(2)    --------->ATHB12                <----------DOF2           --------->ZAT14   --------->GLK1(1)   <---------YAB1   ----------------->AGL1   --------->HSFB2a(1)--------->At4g35610 <----------DOF2    ----------->RAV1(2)  --------->ANAC46  <---------At4g35610  <---------GLK1(1)   taactttgattgcgtaaacagtgcctgaaccagtgagtctttcaagaaacttcttaacttcttctgcgctcacaccattagggaatccaaacacttgaat  5097800                                  --------->AHL20(1)                                  <---------AHL20(1)                                  <---------ARR11(3)         <---------------AGL15                         <---------MYB59              <------ZmHOX2a(2)                           ---                         --------->TOE1(3)           <---------ARR11(3)                    --------->CCA1(2)                         --------->AtMYB61           --------->ARR11(3)                   <---------ARR11(3)          <----------DOF2--------->TOE2(3)    --------->GLK1(2)                           --------->ARR11(3)      <---------ALFIN1 ------->TEIL  <---------AHL20(2)--------->ZAT6               <----------DOF2 ============================================================================MADS_MADS---------->DOF2   tgtcttccccatctttctctatatcaacctaaacaatattttttgaagaatctaagatcactactcaaacaagaagaaacagagggcttaaagatatacg  5097900                            <---------GLK1(1)                  <---------DEAR3(1)                 <------NtERF2                 ------>NtERF2                --------->LBD16                ------>NtERF2              <---------LBD16              --------->LBD16------>ZmHOX2a(2)                 --------->ARR14(2)           -------->P<---------YAB1                --------->YAB1           <---------At5g28300              --------->ARR14(2) <---------ARR14(2)   <---------At4g35610     <---------ARR11(3)     <---------YAB1   --------->At4g35610     --------->ARR11(3)   <---------At4g35610    <----------DOF2    ---------->DOF2 -------->HVH21<---------DEAR3(1)      <---------MYB52(1)      <---------GLK1(2)--------->ZAT6   atgacagataacttaccgcggcgatgaatgatctctgttccctcagtttccgatgatagcctttggattctcactttcatttacactgagaacaaagaac  5098000               ---------->DOF2          -------->HAHB4         <---------YAB1         --------->ICU4       --------->ATHB51       --------->YAB1       <--------HAHB4       <---------ICU4       <--------ATHB1      <---------ATHB51      --------->AHL20(2)   *TSS---------->DOF2               --------------------->WRI1      --------->ICU4 ---------->DOF2                         <----------DOF2              <----------      <---------ATHB12     ---------->DOF2      <------ZmHOX2a(1)<-----------GT1 <---------TOE1(2)   caagtacaataattatcgaaagaaaaagagaaagaaagacccaagtccaaggaccaaagtcttcttttttcttctcgtcttctcaggtctcttattggct  5098100                                                            --------->O2                                                            <---------ANAC46                                                            --------->bZIP60(1)                                                            <---------bZIP60(1)                                                            <---------TGA2(1)                                                            --------->TGA2(1)                                                            =========================================                                                            <---------O2                                                            --------->TGA1a                                                            <---------TGA1a                                                           <-----------STF1                                                          >>>>>>>>>>>AtbZIP1                                                          <---------TGA2(2)                                                         ----------->HVH21                      -----                                                         ----------->TGA1                       <----                                                        <---------ANAC58                    ---------                   <---------ANAC58                     <---------ANAC58               ----------->GT1                   --------->ANAC46                    <---------At4g35610            <---------DEAR3(1)                   <---------ANAC58                 <---------MYB52(1)               --------->SPL7                 <---------ANAC58              <---------SPL7                        <---------ORA47(1)                 <---------ANAC46             <---------ANAC58                     <---------SPL7                 <---------ANAC58             <---------ANAC58      <-----------GT1----------->HVH21 --CBF    ------>ZmHOX2a(1)             --------->ICU4 --------->At4g35610        ------>ZmHOX2a(2)   gagagattaatcctctgtttcgcgtagcaagttaacttcgacatgtttacgtccgattgctgacgtcaatataccagagtttgatcggacggtggaaaga  5098200                                                                                               ------                                                                                             <-------                                                                                           --------->ATHB12                                                                                      <---------YAB1                               ---------->DOF2                                     <---------AHL20(2)                           --------->ATHB12                                     <---------AHL20(1)                    <---------AHL20(2)                                          <---------ARR11(3)    <---------WOX13(1)    <---------YAB1                       <---------YAB1   --------->AHL20(1) <---------YAB1    <---------AHL20(2)                     <------ZmHOX2a(1)     --------->ARR11(3) ==bZIP_DOF    <---------YAB1<---------YAB1      <---------ARR14(2)             --------->AHL20(2) ---->ARR11(3)<---------AHL20(1)                 --------->ARR14(2)            --------->CCA1(2) -----ARR11(3)<---------AHL20(2)                <------ZmHOX2a(1) ------->TEIL<---------ARR11(3)    < ->DOF2<---------TOE2(3)--------->YAB1--------->YAB1      --------->YAB1      --------->ARR11(3)    <   actctcattgatgtattattttttatttatgattaaagactaataagagaggatttagaaggataatgaatgcaactggagatatattatgaacgattga  5098300      ---------->DOF2                                                                             ---     <---------AHL20(2)                                                                          ====   --------->CCA1(2)                     --------->ARR14(2)             <---------YAB1           xxxx  --------->ARR11(3)                     <---------ARR14(2)             <---------AHL20(2)       ----  <---------ARR11(3)              --------->CCA1(2)                    --------->AHL20(2)      ------ --->ATHB12                      --------->ARR11(3)                 --------->AHL20(2)         <----- --WOX13(1)                      <---------ARR11(3)    --------->AHL20(2)--------->YAB1       ------- ---------TOE2(3)   ---------->DOF2     <---------CCA1(2)      <---------ATHB12        <-----------GT1 ---------YAB1<----------DOF2  <---------ZAT6    ----------->GT1--------->YAB1      xxxxxxxxxxxxxxxxx   ttaagatttaaagagtctttaaaaaaggaagtagagatattcgtatattgatggaaaataaacaaatcatatatataatagcagagttttctctcttcta  5098400         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <-----------TGA1        <-----------HVH21       --------->ANAC58       =======================bZIP_DOF       --------->TGA1a       --------->ANAC55(1)            ------->MYC3       <---------O2                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->ANAC58               <-------MYC3       <---------TGA1a             <---------ALFIN1       --------->ANAC46           --------->RAP2.3(3)                                               -       --------->O2<----------DOF2<---------ZAT18                                                  <-       --------->bZIP60(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             <-      <-----------STF1          --------->PCF2                                                     <-     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          xx     <---------ALFIN1          --------->TCP20                                                     xx ------>DAG2     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              -- ================bZIP_DOF<---------TOE2(3)                                                         -- xxxxxxxxxxxxxxx>smallRNA(si3) <---------PCF2                           --------->LBD16           xxx ------>DOF2    <---------ARR11(3)--------->ZAT18--------->ANAC46      <---------ANAC58     xxxxxxxxx --->HSFB2a(2) --------->REM1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC46   --------->ICU4 ----HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   <---------ANAC58  xxxxxxxxxxxx ---------------->TaNAC69(2)--------->ALFIN1 <-----------GT1 <---------AHL20(2)          xxxxxxxxxxxx xxxxxx>smallRNA(si3)  <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxx   aaagtgtccacgtcactacatctttttaatgtggagcccacatgtttttactcgccttcacatttttttttatgcgtgaaatagatttagtaatgtttat  5098500  Previous    Next  AGI:  At1g14790.1    Description:  RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding. similar to RDR2 (RNA-DEPENDENT RNA POLYMERASE 2), RNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G11130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42373.1); similar to RNA-directed RNA polymerase [Solanum lycopersicum] (GB:CAA71421.1); similar to RNA-directed RNA polymerase [Nicotiana tabacum] (GB:CAA09697.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 5093956    to: 5098027    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version