Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ------>ZmHOX2a(1)                   <-----------GT1              <---------ANAC58              <---------ANAC58              <---------ANAC46                                                             --------->AHL20(1)              <---------ANAC55(1)              ---------->DOF2                             <---------AHL20(1)            <---------AHL20(2)             --------->YAB1                                  <---------AHL20(2)        <---------AHL20(2)            --------->ANAC55(2)                                  --------->AHL20(2)        --------->AHL20(2)     <---------AHL20(2)                                         --------->AHL20(2)        --------->AHL20(1)    <---------AHL20(1)                                    ------->TEIL       <---------AHL20(2)     <---------ARR11(3)               <----------DOF2     <---------CCA1(2)       --------->AHL20(2)     --------->AHL20(1)            <---------ARR11(3) <----------DOF2 -------->RAV1(1) <---------CCA1(2) <-----------GT1    <---------YAB1       --------->GLK1(2)   ctacagaaattaaattacttgtatcctttctatatattttacctattgtaaaagactatcaatacctttgaattcgagtttctttgtatctaataaattt  5040500                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                        --------->YAB1                                                      --------->AHL20(2)                                                   --------->AHL20(2)                                           <---------ZAT18 --------->ATHB51                                           --------->ZAT14 <---------ICU4                                           --------->ZAT18 <--------ATHB1      --------->AHL20(2)                                         --------->ANAC46 --------->ICU4       <---------AHL20(2)                                      <---------ZAT14 --------->AHL20(1)   --------->AHL20(2)    <---                           <---------ARR11(3)     --------->AHL20(2)    ------->TEIL        <--------                          <---------CCA1(2)<---------ZAT14<---------YAB1<-----------GT1     ---------                  ------>ZmHOX2a(1)   --------->ZAT14--------->YAB1  <---------REM1(1)      ---------            <-----------GT1--------->ARR11(3)     --------->YAB1     ----------->GT1<------------CBF   caaaacacacatattttctccttcatatatatcttcagtctatactgcacaataaaaataataatttgaagatgtaactaaataaatattggagagctaa  5040600                                              ===================================HOX2a_HOX2a                                              <------ZmHOX2a(2)                                              --------->CCA1(2)                                             <---------ARR14(2)                                             <---------ARR11(3) ----------->RAV1(1)                                             --------->ARR14(2) <---------DDF1                                             --------->ARR11(3)------->GAMYB                                             --------->AGP1    --------->At1g77200                                     <------------CBF          --------->DREB2C(2)                                  ------------>CBF             --------->DEAR3(1)  ----------->GT1                 ------>ZmHOX2a(2)   <-------TEIL ---------CBF                    <------ZmHOX2a(2)   <--------P--------->DEAR4(1)         <----------DOF2 -At4g35610                     --------->ARR14(2)<---------TOE2(3)                   <---------At4g35610 >At4g35610       --------------->AtSPL8 ---------->DOF2      --------->DEAR3(2) <---------ZAT6  <--- -->GT1<------------CBF         <---------ARR14(2)<---------TOE1(2)       <------ZmHOX2a(1) <--------   attgaagtaaattgcatatttttgtacttgtttggatccaattgaaagatccaaggttgataccaccgacatacaaggacatagtgttagctctttaatg  5040700                                           <---------ICU4                                          --------->ICU4                                          <---------YAB1                                        --------->YAB1                                        --------->ATHB12                                        <--------ATHB1                   ----------->TBP      <--------HAHB4                   <---------YAB1  ------------>CBF                 <---------------AGL15  <---------ICU4                 --------------->AGL15  --------->ATHB51                 --------->YAB1  <---------WRKY18(1)                ----------------->AGL3 --------->AHL20(2)                <-----------------AGL2 --------->ICU4                                     <---------GLK1(1)    --------->ARR11(3)          --------->WRKY12                                    <----------DOF2    <-----------ARR10           --------->WRKY38(1)                              ------>ZmHOX2a(1)    --------->GLK1(2)          <---------WOX13(1)                               <---------ALFIN1    <---------ARR11(3)        <------------CBF                                ------>ZmHOX2a(1)   <---------GLK1(2)         --------->ATHB12       <---------ATHB12       --------->HSFB2a(1) -------ID1     <-----------------AGL3 <---------ATHB12  ------------>CBF --------->ARR14(2) -AHL20(2)------>NtERF2 ----------->GT1<---------ATHB51--------->GLK1(1)  <---------ARR14(2)     ----   ggccaaaatctcggcccaactataaatggtttcattgaccaataattagtgccactgatttcaattttgaaattcgaatcctcctcctttggaattcaga  5040800                                                          ------>ZmHOX2a(2)                                                         <---------GLK1(1)                                                         --------->GLK1(1)                    <---------ZAT18                     ------->TEIL                    --------->ZAT18                     --------->ARR11(3)           ---------->DOF2       <---------ARR11(3)                        <---------YAB1                    <---------YAB1       --------->ARR11(3)             <---------ANAC58  <---------ARR11(3)     <---------DAG2 ----->GLK1(1)<---------At4g35610     <---------ANAC58  <---------AGP1         <----------DOF2     <-   aaccctagagttcttcagcgagcgaactctgtctgcgatttcttgttgattctaaatggatctctcgcgagaagtcgatgactttatcaaagagacaatc  5040900                                                                                    --------->ZAT6                                                      <---------LBD16            --------->ZAT14                                                 <---------REM1(2)               --------->REM1(2)                                                 <---------ZAT14          --------->ATERF1(1)                                                 --------->ZAT14         <---------ATERF1(1)                                          --------->DAG2      <-----------ARR10  <---------ZAT14                   <---------GLK1(1) --------->LBD16--------->ANAC46<---------At4g35610 <-----------ARR10            <---------ANAC58        --------->HSFB2a(2)       --------->GLK1(2)--------->LBD16            <---------ANAC58       <---------LBD16<---------ALFIN1  --------->At4g35610 <---------ARR11(3)     <----------DOF2        ------->TEIL ---------->DOF2     <---------GLK1(2)<---------ANAC46 -----ZmHOX2a(2)   --------->GLK1(1)<---------HSFB2a(2)  <------NtERF2<-----------HVH21 --------->GLK1(2)   gatcactctttagggcttccgatatccatggacgttctccagaaaaagctctacacggcggaagaatctcagcgtcgtctccgtgaacagtatctatctc  5041000                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                            --------->CCA1(2)                                           <---------ARR14(2)                                           --------->ARR14(2)                        --------->DAG2     --------->AGP1             --------->At4g35610                 ---------->DOF2         ----------->ARR10         <-----------HVH21           ---------->DOF2         ------>ZmHOX2a(2)        ------->TEIL                       ------    --------->HSFB2a(2)---------->DOF2 <---------MYB52(1)<---------YAB1          <-------TEIL--------   tggtttcgagattgaaagagaaagaaaaagtaatcgatctcgttagatccgaagcgagtatgaatgcccagtcgctgaagaaattcgtcgaagagaatca  5041100                                                                            ------>ZmHOX2a(2)                                                                            ----------->GT1                                                                           <------ZmHOX2a(2)                                                                          --------->ARR14(3)                                  <---------ZAT6                          <---------ARR14(3)                        ----------->GT1                                   --------->ARR14(2)                        <------MYB83                                      --------->ARR11(3)                        <------MYB46(1)                                   <---------ARR14(2)     ----                    <---------ARR14(2)                    <----------DOF2 <---------ARR11(3)     <---                    --------->ARR14(2)           ---------->DOF2   --------->YAB1               <---- --->YAB1          <------ZmHOX2a(1)        ----------->GT1       <---------YAB1             <------- ->GLK1(2)        ----------->ARR10        --------->ALFIN1   <----------DOF2         <---------ATHB12   gaaattgggaagcgagcgcgaggatttggtgaatcagtgtaagaagtgggaaaaagaatgctttctttatcatcaagatcgtgaatcactcatggagttc  5041200                                                                                                  ---                                                                                                  <--                                                                                                  ---         --------->MYB52(1)               <---------ANAC58                                       <---        ----------->TGA1                  <---------ANAC58                                   --------       <---------MYB52(2)                 <---------ANAC46                                   <-------  --------->ANAC58                        ----------->GT1                                    <-------  --------->ANAC58                       <-------TEIL                                      --------->LBD16 ----->HSFB2a(2)                <-----------ARR10                                        <---------LBD16 ------HSFB2a(2)                --------->GLK1(2)                          <---------At4g35610 ------ -----LBD16                --------->At4g35610                 ----------->GT1    <---------ATHB12--- --GLK1(1)   ---------->DOF2   <---------GLK1(2)      <------ZmHOX2a(1)    --------->At4g35610<------ZmHOX2a(2)   gggaacgaaactgacgaaagggctagagaagcagaatctagggttcgtgaattggaggaagaagttagaaaaatgtctgatgaaatcaagagccggatcg  5041300                                                                          <---------ARR11(1)                                                                          --------->ARR11(3)                                                                          <-----------ARR10                                                                          <---------ARR11(3)                                                                          --------->ARR14(2)                                                                          ------->TEIL ---->TEIL        <--------P                                              <---------ARR14(2) -------ARR14(2)  <---------WOX13(1)           ---------->DOF2           <---------CCA1(2) ------>ARR14(2) <-------GAMYB           <-------GAMYB                   <---------ARR14(1) ------ARR14(1) <---------MYB46(3)      <---------MYB46(3)             <---------ANAC58 ->ARR14(2)     <------MYB83            --------->MYB52(2)             <---------ANAC58 ----ARR10      <------MYB46(1)        <---------TOE1(2)               <---------ANAC46 --ARR14(2)    --------->MYB59        <---------MYB52(1)             <---------ANAC46 >ZmHOX2a(2)--------->ATHB12<---------ICU4<---------MYB52(1)  <---------YAB1 ------>GLK1(2)<---------AtMYB61   <------NtERF2 --------->ICU4--------->ATHB12                     <   aatctgaagaagattgtttggttgattcaatattggcatcgttcgttagtaaagatgagagtatatcattggggcgtatcttcttggaggctaatagtga  5041400  Previous    Next  AGI:  At1g14670.1    Description:  endomembrane protein 70, putative. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT2G01970.1); similar to Putative endosomal protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52585.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42436.1); similar to unknown [Picea sitchensis] (GB:ABK24901.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) Range:  from: 5037607    to: 5040523    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g14680.1    Description:  similar to structural molecule [Arabidopsis thaliana] (TAIR:AT4G09060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61579.1) Range:  from: 5040856    to: 5041728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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