Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <----------TaMYB80                                                       ---------->DOF2   <---------ARR11(3)                                                      <---------At4g35610   --------->ARR11(3)                                <----------DOF2       --------->At4g35610 --------At4g35610                                   <---------DAG2    ------>ZmHOX2a(2) ------->At4g35610            --------->DOF5.7(2) ============================HOX2a_HOX2a --------RAV1(2)             <----------DOF2      <------ZmHOX2a(1)  --------->ARR11(3) ------HVH21        <-------TEIL               --------->HSFB2a(2)   <---------ARR11(3)   caggtgatattccttccacaggttcatttgactttaactcatgaagtctctaggacttttttcgaaagtgtgatctcagaagagcaaatgagttttgcga  5027300           ----------->GT1                                                ----------->GT1    --------->MYB52(1)                                                    <---------ZAT6    <---------DOF5.7(2)                                              <----------DOF2              <--   <---------WRKY38(1)                        <---------REM1(1)    <---------ZAT2          --------->TOE1(2)   <---------WRKY12                        <---------YAB1          --------->ZAT2       --------->ARR11(3)   <---------WRKY45 --------->ATHB12    <---------MYB52(1)        <---------TOE1(2)     <---------ARR11(3)   ttgagtcaacgaatagttaaaatgtttggaaattggaacactgttatgatgtagttcaatagcactcccagctttagagtaaaaaaacatgatcatgcga  5027400                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                          --------->ARR14(2)                                                                                          <---------ARR14(2)                                                                                        --------->LBD16                      ----------->GT1                                                  <---------HSFB2a(2)            ----------->GT1                                                         ------>ZmHOX2a(1)            --------->LBD16                                                         ===============HOX2a_HOX2a          <---------LBD16                      <---------MYB59                      ==============HOX2a_HOX2a          --------->At4g35610                ------->TEIL              --------->DAG2  --------->HSFB2a(2)          <---------At4g35610      ---------->ID1                      <---------------AtSPL8      <- --------DOF2      --------->MYB52(1)    <---------------AtSPL8       ---------->DOF2 <---------LBD16   ctttgcagagacagcggaaaaaaacagagaaaactttgtcatttaagtacctagttttgttgataaaaaaaaaaaagtacccagtccttccggatccaaa  5027500                         ------>ZmHOX2a(2)                         =====================================HOX2a_HOX2a                        <------ZmHOX2a(2)                                            ---------->DOF2                       <---------ARR14(2)                                    --------->ANAC46                       --------->ARR14(2)              ------>ZmHOX2a(1)     --------->ANAC58                    ------>ZmHOX2a(2)            --------->ATHB51            --------->ANAC58                   <------ZmHOX2a(2)             <---------ICU4        --------->GLK1(1)                  --------->ARR14(2)            --------->ICU4     --------->ANAC58  <---------DOF5.7(2)             <-----------GT1                    <---------YAB1     --------->ANAC58--------->DOF5.7(2) ---------DOF2    <---------ARR14(2)          --------->YAB1    --------->TOE1(2) <-------GAMYB <----   actttcaagcttgtattacagatcggatccaaaactttcaaacttctaccattattcctgtctaatcgaacgaaattccaagcccgttaaaggcccatta  5027600                                                                 <---------ARR11(3)       --------->CCA1(2)                                         --------->ARR11(3)      --------->ARR14(2)                                         --------->GLK1(2)      <---------ARR14(2)                                 *TSS    <-----------ARR10 <---------At4g35610                      <---------AHL20(2)     <---------ARR14(2) <---------ZAT2  <------MYB46(1)         <---------AHL20(2)      --------->ARR14(2)           ------- --------->ZAT2  <------MYB83 ------>ZmHOX2a(1)         ---------->DOF2                     <-------- --------->At4g35610<-------TEIL         --------->AHL20(2)     <---------ARR14(1)         <<<<<<<<<<AtWER -------GT1     --------->MYB59     ------------>CBF --------->TOE2(3)  <<<<<<<<<TBF1     <---------ZAT6   accagctggatacgaagtttggttcataaatcctagggctcaatttaatctgtttcattaaagagagtatcttcttcttcattttccttctactgttagt  5027700                                                                                       --------->ARR14(2)                                                                                   <------NtERF2                                                                                 <------NtERF2                                                                                 <---------DEAR3(1)                                                                                <---------LBD16                                                                             <-----------HVH21                                                                            --------->O2                                                                            <---------O2                                                                            --------->bZIP60(2)                                                                  --------->ARR14(2)   <---------ARR14(2)                                                                  <-----------ARR10------>NtERF2                                                                  <---------ARR14(2)  <------NtERF2                                                                 <---------MYB52(1)--------->At4g35610                                                                <---------DEAR3(2) <---------LBD16                                                             ------>NtERF2  --------->TGA1a                                     <-----------HVH21       <------NtERF2  <---------TGA1a                              --------->ANAC46             --------->SPL7   --------->bZIP60(1)         --------->YAB1       --------->ANAC58           <---------SPL7     --------->ANAC46       <-      <----------DOF2         --------->ANAC58          <---------ANAC58    <---------DEAR3(1)     --      --------------------->WRI1  --------->ANAC58      <---------ANAC58--------->HSFB2a(2)    <----- -->MYB52(2)           <---------MYB52(1)      >>>>>>>>>>AtWER <---------DEAR3(1)<---------RAP2.6(2) -MYB52(1)          --------->SPL7--------->ANAC58     <-------TEIL     <---------HSFB2a(2)    <-----   tctatcgactttcatcaaatcgtccgtcttgtaagcaagcttcacatctccaactggttcgtccgccggttcttctcgacgtcgcggcggaactgtttct  5027800          <---------ABI4(1)          --------->ZAT18          <-------TEIL                                      --------->ARR14(2)         --------->ALFIN1                 ----------->RAV1(2)     <----------DOF2       <---------ANAC58                   --------->ZAT2    <---------ARR14(2)        ------>ZmHOX2a(2)       <---------ANAC58                   --------->At4g35610   ------>ZmHOX2a(1) --------->ETT(2) ------>NtERF2--------->ALFIN1            <---------At4g35610   =============================HOX2a_HOX2a --------HSFB2a(2)                      <-----------RAV1(2)<---------MYB52(1)     <---------ETT(2)<-- ------->HSFB2a(2)         <----------DOF2<---------ZAT2 <---------ANAC58    <---------At5g28300----- ----ANAC58 <---------ANAC46   <---------HSFB2a(2)       <---------ANAC58   <-----------GT1     ----- ----ANAC58<---------DEAR3(1)  --------->HSFB2a(2)  <----------DOF2       <-----------GT1<----------DOF2   tcccgactgaggtgcggtgtttctaatccctttctaaaaccctcagctggattcctttgccgtttcctcttttttttttcactgtcgatctctttctctc  5027900                                                 --------->DOF5.7(2)                   <---------YAB1               <----------DOF2                  <-----------GT1        --------->TOE1(2)             <-----------ARR10          --------->YAB1           --------->LBD16              --------->ATHB12          --------->HSFB2a(2)          <---------YAB1                                               <         <---------LBD16             --------->YAB1                                                 -       <---------ARR14(2)           --------->KAN4(1)                                               - -------CCA1(2) <---------AHL20(2)  --------->ICU4          --------->MYB46(3)                      - ---->ANAC58 <---------ARR14(2)    <---------KAN4(2)  <----------DOF2                    <-----------GT1 ---->ANAC58 --------->ARR14(2)--------->YAB1<------ZmHOX2a(1)              <---------ARR14(2)      <   gcatcttagtttccggattttatccttgtccaatcggaataatcataggactttaacttttatcaaccgatttcagtagatttgatagtttatactttct  5028000                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)            --------->MYB46(3)                                                        --------->ARR11(3)          <-----------GT1    ---------->DOF2    <---------TOE2(3)                     <---------GLK1(2) ---------ZAT2   --------->AHL20(2)         <----------DOF2                --------->ZAT2 -------->ZAT2  <---------ATHB12    <---------YAB1                         --------->At4g35610 -------->At4g35610    <------MYB83 --------->ICU4                         <---------ZAT2  >>>>>>>>>> ---------->RAV1(2)    <------MYB46(1)    ------->TEIL       <---------HSFB2a(2) --------->AtLEC2 ---------At4g35610   --------->MYB59--------->YAB1       <--------P       <---------At4g35610      <   acagctgagttttaaccaatgaattaggtctaaaagttatcatgaactttgatgtttctggttgcagaaaaatgttcagctcgatgcagatactgccact  5028100                                    ------>ZmHOX2a(1)                                    =========================HOX2a_HOX2a          <---------LBD16    <---------ALFIN1                                                <-------         ------>ZmHOX2a(1)  --------->ZAT18          --------->ARR11(3)                      --------      ------>ZmHOX2a(1)     <-------TEIL             <---------ARR14(2)                      <-------   <---------ATERF1(1)      <---------ZAT18      <-----------------AGL1           <---------ZAT2  <---------ARR14(2)     <------MYB83 --------->ANAC46<------ZmHOX2a(2)          --------->ANAC58  --------->ARR14(2)     <------MYB46(1)        <-----------GT1                  --------->ANAC58 --------->ATERF1(1)    --------->MYB111(1)     --------->MYB52(1)         <-------GAMYB    <-------- >>>>>>>LFY             --------->MYB59<-----------HVH21  <------ZmHOX2a(1)--------->At4g35610 ---------ATERF1(1)     --------->MYB46(2)    <---------MYB52(2)          --------->ALFIN1  ---------   ggaggctcctcctacggatgggaagttaggtccacttcctccgtcgcaattaacagatcaggaagtcgaagagagggagttgcaagcagagcaaaataat  5028200  Previous    Next  AGI:  At1g14650.1    Description:  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein. Identical to Probable splicing factor 3 subunit 1 [Arabidopsis Thaliana] (GB:Q8RXF1;GB:Q0WWB5;GB:Q9MA20); similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G14640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75427.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42010.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain SWAP/Surp; (InterPro:IPR000061) Range:  from: 5027657    to: 5030787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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