Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------HSFC1(1)              <---------LBD16            --------->GLK1(2)           --------->ARR14(2)           <---------GLK1(2)           <---------ARR14(2)     --------->ANAC58     --------->ANAC58                                                             <---------TOE2(3)   --------->SPL7           --------->YAB1                           --------->TOE2(3) <---------SPL7<---------HSFB2a(2)                                   <----------DOF2               <- -------->DEAR3(1) <---------GLK1(1)          ------->TEIL        ------->TEIL    <---------TOE1(3)-- ---------HVH21--------->HSFB2a(2)  <-----------GT1     <----------ID1    <---------ATHB12        <--   cgtcgtccagccatattctggaactctcaattgtattcttaccaattgaatctacaaaaaaacaaatgaaactttaatcaatttagggtttttttctcta  4973300         --------->AtLEC2              ------>ZmHOX2a(1)    --------->ANAC46                  --------->TOE1(3)    --------->ANAC58                  --------->TOE2(3)    --------->ANAC58               --------->ARR14(2)  <---------ALFIN1                 <---------ARR14(2)  --------->ZAT6              --------->AHL20(2) --------ICU4            ------>ZmHOX2a(1) ------->YAB1           --------->TOE2(3)      <---------MYB59        <---------ALFIN1 -------ATHB12--------->MYB46(3)  <---------CCA1(2)               <---------ATHB12   atcaacactccatacaacaactatttcctcaatttcatatccttaaatgcctaatcttccgattccaaatcaacacattccctaattccaatcccaattc  4973400                                                                                         <---------LBD16                                                                                     ----------->RAV1(1)                                                                                     <---------ALFIN1                                                                                  ------>ZmHOX2a(1)                                                                               <------ZmHOX2a(2)                                      --------->ARR14(2)                      <---------ARR14(2)                                 --------->MYB52(1)                           --------->ARR14(2)                        <---------ALFIN1                                      --------->ARR11(3)                        ----------->RAV1(1)                                <-------TEIL<---------ALFIN1                  --------->ANAC46 <---------ANAC46                       --------->CCA1(2)                --------->MYB52(1)<---------LBD16                         --------->ARR14(1)                <---------DOF5.7(2)<---------ANAC55(2)                   --------->TOE1(2)            --------->ANAC58    ----------->HVH21                        --------->ARR11(1)      <---            --------->ANAC58    <---------ATHB12                         --------->ARR14(2)   -------        <------ZmHOX2a(1)       ----------->TGA1                         <---------ARR14(2)--------->LBD16       <----------ID1 --------->SPL7  <---------ARR14(2)               ----------->ARR10--------->MYB52(1)   aaaaccagaaggacaagtaaacggtaccacagcaatgacggaaacgattccatatagaacagcaagaacatggaagatacgatcctgccacaccggagat  4973500                                                                                ------>NtERF2                                                                              <------NtERF2                                                                              --------->DEAR4(2)                                                                              --------->RAP2.3(1)                                                                              --------->ATERF1(1)                                                                             <---------ATERF1(1)                                                                             ------>NtERF2                                                                             <---------RAP2.3(1)                                                                             <---------DEAR4(2)                                                                            --------->RAP2.6(2)                                                                            --------->ANAC46                                                                            --------->DEAR3(1)                                                                            <---------DEAR3(1)                                                                           --------->DEAR3(2)                                                                           --------->RAP2.3(1)                                                                          --------->ZAT2                                                   --------->At4g35610   --------->ANAC46     -------                      <-----------GT1         <---------YAB1             --------->ANAC58     -------                   <---------ICU4        --------->ANAC58                --------->ANAC58     -------               --------->AtMYB61         --------->ANAC58     --------->TGA2(1) <---------At4g35610            --------->AtMYB61            --------->ANAC46     <---------bZIP60(1)            --------            <---------ALFIN1           <-----------GT1        <---------TGA2(1)--------->RAP2.3(2)           <---------MYB55(2)        --------->AHL20(2)       --------->bZIP60(1)       --------->At4g35610 ----TEIL--------->ANAC46            <---------AHL20(2)  <---------At4g35610--------->RAP2.3(2) -->GLK1(1)--------->MYB46(3) ------>ZmHOX2a(1)--------->ATHB12  <---------ICU4--------->DEAR3(1)   tcattcacatcccaccaccaattcttaccctccttcaaattaaacgctacgattgctgaagatgacatcatttccaagccgccgcttctcatctccacga  4973600                                                   --------->DAG2                                                  ---------->DOF2                                <---                                               --------------->AGL15                             <---                         =========================HOX2a_HOX2a                                    ----                         ------>ZmHOX2a(1)     <---------------AGL15                           <----- -->ANAC58              --------->TOE2(3)     ----------------->AGL3                           <----- -->ANAC58              <---------ANAC46      ----------------->AGL2                      ------>ZmHOX2a(1) -->ANAC46      <-------TEIL               <------ZmHOX2a(2)                        ------>ZmHOX2a(1) ->LBD16       --------->CCA1(2)    <---------At4g35610  --------->GLK1(2)   ------>ZmHOX2a(1)------>ZmHOX2a(1)   aaaaaacacatacaaagattcaaattccttatagatttagcttcgatcaccaaaaagagaatcgatcgaatcacttctcctctctccttctccttcctag  4973700           <<<<<<<<<<GT-3b                                                                          <      --------->AHL20(2)                                                           --------->ANAC58 <      <---------AHL20(1)                                        --------->CCA1(2)  --------->ANAC58 -      <---------AHL20(2)                                     ----------->ARR10 <-----------HVH21    <  <---------AHL20(2)                                  --------->ANAC58       <-----------HVH21      = <---------YAB1                                       --------->ANAC46       --------->At5g28300    < ------ARR11(3)                                   <-----------GT1           <---------ANAC58        < ------GLK1(2)                     <---------TOE1(3)  --------->LBD16       <---------ANAC58        < ----->ARR11(3)                    <---------TOE2(3)  --------->ANAC58     <---------DEAR3(1)      -- ----TOE1(2)          <---------AHL20(2)<-----------TBP--------->LBD16 --------->DEAR3(2)        ---- ----TOE2(2)         *TSS      <----------DOF2 <---------ZAT6<---------TOE2(3)----------->HVH21  ----   atttttattttatttttcttccatttttttttgttttaaggtatttatagtattacccgaaataagatttgagaccggccgtgacagggaatacttagaa  4973800                                                  <---------MYB46(3)                                                  --------->MYB55(2)                                                 --------->ALFIN1                     <---------ANAC55(2)                                              <---------DREB2C(2)                     --------->ANAC55(2)  --------->ALFIN1                      --------->CCA1(2)                             --------->ANAC55(1) ---------TGA1a                        --------->ARR14(2)      --------->ALFIN1       --------->ANAC46 ---------ANAC58                       <---------ARR14(2)     --------->REM1(2)     <---------ALFIN1 -------->O2                       <---------LBD16--------->ABI4(2)              ----------->HVH21 ---------O2                      --------->MYB52(1)         --------->ALFIN1    --------->DREB2C(2) ======================================bZIP_DOF  <---------AtMYB61               --------->At1g77200 ---------bZIP60(2)              --------->MYB52(1)        <---------ANAC58     --------->DEAR3(2) ---------ANAC46                 <-----------GT1<---------MYB52(1)  <---------ARR11(3)--------->ANAC58 ---------ANAC58                 <---------ARR14(2)        <---------ANAC46  ----------->HVH21 --------->STF1              --------->DAG2   <---------DEAR3(1)    --------->ARR11(3)--------->ANAC58 ------->HVH21              ---------->DOF2  <---------LBD16--------->LBD16  --------->WRKY38(1)    - ------->TGA1      <------ZmHOX2a(1) --------->LBD16       <---------ANAC58<---------At4g35610     <-   tgacgtggaagaaactgaagaggagattgaaaaagtaaccggatatagccggtggttctctccgtgtggagatgttctggtgaccgacacgcaacgttgt  4973900           ------->MYC3           <-------MYC2           <-------MYC3           ------->MYC2           ------->PIF5           <-------PIF5           ------->MYC4                  <---------At4g35610           <-------MYC4            <---------TOE2(3)          <---------ANAC46       <---------AHL20(2)          =================================================bZIP_DOF          --------->TGA1a       <---------AHL20(2)          <---------O2<---------ANAC58   --------->At4g35610          --------->O2<---------ANAC46   <---------STY1(2)                              ----------->TGA1          <---------TGA1a       --------->AHL20(2)  <---------AHL20(2)             <-----------GT1        <---------ALFIN1 ----------->GT1 --------->ZAT2     <----------DOF2      <---------AHL20(2) -------->YAB1        <---------ANAC58   <---------ZAT2   ------->TEIL           --------->AHL20(2) --------YAB1  ------->TEIL  --------->AHL20(2) <----------DOF2        ----------->GT1<---------ICU4   tatcatagttccacgtgtatgtatacgtggataaattaatgctagctggactttttaatgaactttagagagattgtgactaatttaacaatgacgaaac  4974000                               <----------DOF2                            --------->ZAT6                          <-----------GT1                        <---------YAB1                                    --------->ARR14(2)                      -------->HAHB4                                      <---------ARR11(3)                      -------->ATHB1                                      <---------ARR14(2)                      <--------HAHB4                                     <---------CCA1(2)                      <---------ICU4                           <---------AHL20(2)                      --------->ATHB51          --------->ARR11(3)  <-----------GT1                      <---------AHL20(2)        <---------AHL20(1)<---------ICU4                      --------->YAB1           <---------CCA1(2) <---------YAB1                     --------->ICU4        --------->TOE1(3)  --------->AHL20(2)                     <---------YAB1<---------ANAC58        --------->AHL20(2)                  <-----                  <---------AHL20(2)       --------->TOE2(3)  --------->ICU4                   ------                  --------->AHL20(2)       <---------DAG2 <---------ARR11(3)            --------->MYB52(1) --------->YAB1  --------->AHL20(2)<---------ANAC58       <---------AHL20(1)          <---------MYB52(2) --------->AHL20(2)  <---------ATHB51<---------TOE1(2)    --------->AHL20(1)          --------->MYB46(3)   taataaaaaatgctatggatttaattattaacactttccttggtaccttatatattccaaaatatttattattccatatattcaaataacaaacgaatta  4974100                                                               --------->YAB1                                                              <---------YAB1                                                             --------->AHL20(1)                                                             --------->AHL20(2)                                                             <---------AHL20(1)                                                            --------->YAB1                                                      <---------ANAC55(2)                                                      --------->ANAC55(1)                                                      ----------->GT1                                                      --------->ANAC58                                                      --------->ANAC58                                                      --------->ANAC46                                                      --------->ANAC55(2)                 <----------DOF2      <------ZmHOX2a(1)   --------->YAB1           <---------REM1(2)                <-------TEIL  --------->ZAT14   --------->ANAC46             <---------ARR14(2)             <---------TOE2(3) ----ICU4           --------->ANAC58          <---------ANAC46<---------AHL20(2)<---------TOE1(3) --->ATHB51         --------->ANAC58 ------->TEIL--------->ARR14(2)      ------->TEIL     <---------DAG2   tcgctgcaggaattttagttacacacaattacaaaaatgaatcaaatggggtatacacgtaaatataataacatgaattttcaaggttcgaacttttctc  4974200  Previous    Next  AGI:  At1g14530.1    Description:  (TOM THREE HOMOLOG); virion binding. similar to TOM3 (tobamovirus multiplication protein 3) [Arabidopsis thaliana] (TAIR:AT2G02180.1); similar to unknown [Brassica rapa] (GB:ABJ15786.1); contains InterPro domain Protein of unknown function DUF1084 (InterPro:IPR009457) Range:  from: 4970853    to: 4973721    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g14540.1    Description:  anionic peroxidase, putative. Identical to Peroxidase 4 precursor (PER4) [Arabidopsis Thaliana] (GB:Q9LE15); similar to anionic peroxidase, putative [Arabidopsis thaliana] (TAIR:AT1G14550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46727.1); contains InterPro domain Plant peroxidase; (InterPro:IPR000823); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) Range:  from: 4974062    to: 4975700    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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