Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                <----                                                                                              -------                                                            <---------ZAT14                  <-------                                                            --------->ZAT14                  --------                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ---------                         <------ZmHOX2a(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <--------                        --------->ARR11(3)          ----------->HVH21                       <xxxxxxxx                        <---------ARR11(3)        ----------->RAV1(2)                     <----------                     ------>ZmHOX2a(1)            <---------At4g35610 ------>ZmHOX2a(1) <---------KAN4(2) ---MYB46(3)   <---------AHL20(2)      <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------- ->ALFIN1     --------->AHL20(2)    <---------ICU4--------->At4g35610--------->TOE2(3)<------ZmHOX2a(1)   tactcatctagtactattaaatcctagatcatcttgaatttttactacattcacctgacccctacagtcttcctaaatgtgagagagaggaataaccaat  4967100 <------ZmHOX2a(1) --------TOE2(3)         --------->DAG2 -----ATHB12            ---------->DOF2                                   --------->ATERF1(1)    ---- -->WOX13(1)       --------->LBD16                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------AGL15    --------->ANAC55(2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------->AGL15    <---------ANAC46                                    <xxxxxxxxxxxxxxxxsmallRNA(i) -------->AG      <---------ANAC55(2)            <---------CCA1(2) --------->TOE1(2)         <------- ---------AGL2   <---------LBD16        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <----------DOF2------- xxxxxxxxxxxxxxxsmallRNA(si3)          --------->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -GT1           --------->CCA1(2)      --------->ANAC58         --------->CCA1(2)    <---------REM1(1) -------->AGL3  --------->MYB52(1)    ------->TEIL------->TEIL <---------ARR11(3)   <---------TOE2(3)   taaggagggagggataagttacgggaaaaagtagcaaatgaacgctagaatgtatcttacaacaagataccaaggagtctccttttgatgtaacagaatc  4967200                                                                                                    -                                                                                                   --                                                                                                   <-                          --------->ORA47(1)                                                   <-----                         --------->DEAR3(1)                                                    ------                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxx                      --------->AtMYB61                                                      --------                      <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <-------                     --------->MYB46(3)                                                --------->DAG2                     <---------MYB55(2)       <xxxxxxxxxxxxxxxxsmallRNA(s)            ---------->DOF2                    -------->P        --------->YAB1                          xxxxxxxxxxxxxxxxxxxxxxx ----->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --GLK1(2)    --------->YAB1         <------ZmHOX2a(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ----------->RAV1(2)--------->YAB1<xxxxxxxxxxxx   gttagagacttctctatcaaactaccaccgtccaactcgatcatacaatccagtttagcctgaagtataagtgtaatgacaacatcagaaaagtaagcgc  4967300                                                                                                   --                                                                                                   --                                                                                                -----                                                                                                -----                                                                                              <------                                                                                              -------     --------->ICU4                                                                         ---------   --------->bZIP60(1)                                                                    <---------LBD16   <---------bZIP60(1)                                                                    --------->At4g35610 ---------->HVH21                  <---------DAG2                                       <xxxxxxxxxxxx ----->MYC3                     <-----------GT1                                        --------->ZAT2 ------MYC3                   <----------DOF2                                          <---------At4g35610 ----ZAT18                   --------->YAB1          ----------->RAV1(1)               --------->At4g35610 --->ZAT18                   <---------ICU4       --------->ANAC58                     <---------ZAT2 xxxxxxxxxxsmallRNA(i)      --------->ICU4        --------->ANAC58                    <---------ARR14(2) ->At4g35610           --------->ANAC58   ------>ZmHOX2a(1)                           --------->ALFIN1 --At4g35610           --------->ANAC58  --------->TOE2(3)---------->DOF2        <---------ANAC46  -- >smallRNA(i2)       ---------->DOF2<----------DOF2 <----------ID1            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxsmallRNA(i2)    <---------ATHB12    ---------->DOF2      <---------YAB1   --------->ARR14(2)   acatgacatgatgccaagtttacaaaagcaatctttaccttttcctcaacaaaagcaccaaaaagaccattgtgtttgcagtcgaggggagctgcggaac  4967400                                 <---------ANAC46             xxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->GLK1(1) <---------ANAC46         <---------ARR14(2) <---------ANAC58      <---------HSFB2a(2)   <---------ANAC58      <---------ANAC46     <-------TEIL      --------->HSFB2a(2) --------->GLK1(2)     <---------LBD16     --------->ARR14(2) ------>P--------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------AHL20(2) ---->MYB83  --------------->AGL15                                            --------->YAB1 ---->DEAR3(2)           <---------GLK1(2)                                   <---------YAB1 ---->MYB46(3)          <---------HSFB2a(1)          <---------At4g35610    --------->AHL20(2) ---ARR14(2) <---------------AGL15                   --------->At4g35610    --------->AHL20(1) -->ARR14(2)----------------->AGL1                <---------ATHB12          <---------AHL20(1) >LBD16--------->LBD16  <---------GLK1(1)   --------->ANAC58                <---------AHL20(2)    --- xxxxxxxxxxxsmallRNA(fl3)<---------ARR14(2) --------->ANAC58            <------ZmHOX2a(1) ----------- ---->MYB46(1)         ----------->ARR10    --------->ANAC46        ---------->DOF2     *TSS      <--   caactcttccggataccaaaacaaggagattcgtggtgttttttgcaagcaaatcatctgaaaaaaactaaaaaggattatattaatccaaaaccaatgc  4967500                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                           --------->ANAC46                                                                           --------->ANAC55(1)                                                           <---------RAP2.6(3)                                                       --------->ANAC46    --------->ANAC55(2)                                             --------->MYB52(1)            <---------ANAC55(2)                                             ------>MYB83  --------->ORA47(1)                                             ------>MYB46(1)        ----------->GT1                          --------->AHL20(2)--------->MYB55(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <---------YAB1    <---------MYB46(2)   <---------ALFIN1    ---------->DOF2                       -------->ATHB1      <---------MYB52(2)  <---------REM1(2)<---------At4g35610     --------->YAB1    <--------HAHB4      <---------MYB111(1)<---------ALFIN1  --------->At4g35610 - ------>At4g35610      --------->ATHB51    <---------MYB59--------->RAP2.6(2)--------->TGA2(2)    --- ->CBF  <-----------GT1<---------ICU4     --------->ANAC46--------->DEAR3(1)<-----------TGA1<-------- -------At4g35610     --------->ICU4      --------->ANAC55(2)<---------ZAT18<-----------HVH21 -------   agatgaaaaataaccagaagtcgaattattaaacaaaaacatatacctaacgatttcaagccgtccacacgggtaatacgtcagcccaaagagttaactc  4967600                                                                                                    <                                              <<<<<<<<<MYB2                                   -------             <------ZmHOX2a(1)              <---------ANAC58                                  <------        --------->ATHB12                    <---------ANAC58                                 -------- ----->ZmHOX2a(1)                        --------->DAG2                                <---------WRKY18(1) -------->RAV1(2)                    --------->YAB1                    <------ZmHOX2a(1)   <--------- ---GT1<---------YAB1              <---------WOX13(1)               --------->DAG2     <-----------GT1 -->ZAT6--------->YAB1           --------->ATHB12                  ---------->DOF2   <---------WOX13(1)   tcctgagccatcataggaaataacacattacaaattgattgataaggcgttgctaacattcaaatatcgaaaaggactgggaatgagattgaccttttaa  4967700                                                                                                   --                                                                                                  ---  <---------RAP2.6(2)                                                                        -------- <---------At5g28300                                                                         -------- -----------GT1          ------->TEIL                                                        <------- -->AHL20(2)           <---------ZAT18                                <---------AHL20(2)     <------- ---AHL20(2)        ---------->DOF2                                   --------->AHL20(2)     ------>ZmHOX2a(2) ->AHL20(2)      --------->YAB1     ---------->DOF2            ------>MYB46(1)              <------ZmHOX2a(2) -DOF2 ---------->DOF2 --------->ZAT18                         ------>MYB83      --------->ZAT18  <--   ttttacggccaaagagataacataatgcaccagcgaatgaaagaaaaacagtagattccatcacctacaaaattaaacaagagtgcatcacacgatcgtt  4967800        ------>ZmHOX2a(2)      --------->ARR11(3)                                     --------->ZAT2      <---------ARR11(3)                                     --------->At4g35610 ------->LBD16                                          --------->bZIP60(1)                    <----- ------>HSFB2a(2)                                       <---------bZIP60(1)                   <------ ->HSFB2a(1)                                       <---------ICU4                     <----------DOF2 ->HSFC1(2)          --------->AHL20(2)        <---------AHL20(2)                    <---------ANAC58 --HSFB2a(1)     <---------AHL20(2)           --------->AHL20(2)             <---------YAB1   ------- --MYB46(3)     --------->AHL20(2)            <---------AHL20(2)       <---------TOE1(3)     -------- -------HSFB2a(2)--------->AHL20(2)          --------->YAB1  <---------At4g35610     <---------ANAC58   ccagagttgatcttaaaattaaaataaaaacaaaaacaaaaactgaattttaattttgacatcagcttagtctaagcttatactagtgctttcaatttta  4967900                                                 <---------ZAT6                                        --------->ARR11(3)    <----------DOF2  ----------->HVH21 <---------CCA1(2) ----AHL20(2)  --------->ARR11(3)     <---------AHL20(2)                                          --- ---AHL20(2)   <---------ARR11(3)    --------->YAB1                              <---------ARR14(2) -->AHL20(2) <---------TOE2(3)      <---------YAB1   <-----------GT1  <----------DOF2----------->GT1 ->YAB1      <---------TOE1(3) <----------DOF2  <---------YAB1 --------->ATHB12  --------->ARR14(2)   atttgcctttggattaaggtcttgtgacctctgcttttattatatctattagtattaactattagtcattgactttatatgtgtatatgggaaaaatact  4968000  Previous    Next  AGI:  At1g14518.1    Description:  other RNA Range:  from: 4966805    to: 4967488    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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