Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ANAC58          <----------DOF2      --------->ATHB12 --------->MYB52(1)                                 <- --------HSFB2a(2)            <-------TEIL  --------->ANAC58                                       --   tttcgaagttttctttctggctctcaaattgattcattagtcttgtaagcaaacgttgtctccatgttattttggataatataacatgtagtcatgtaga  4953700                                                                                                   --                                                                                                -----                                                                                               ------                                                                                               ------                ---------->DOF2      <---------ICU4                                         <--------               --------->YAB1        --------->AHL20(2)                                    <---------GLK1(1)           <------ZmHOX2a(1)      --------->YAB1                                           <---------CCA1(2)  --------->ANAC58        ----------->RAV1(1)                                           ------->TEIL  --------->ANAC58     --------->ANAC58  <---------YAB1                                 <-------TEIL  ----------------->AGL1 ----------->HVH21--------->YAB1                            --------------->AtSPL8  --------->ANAC46     --------->ANAC58 --------->ARR11(3)            --------->YAB1<---------------AtSPL8 --------ARR14(2)    ---------->DOF2 --------->YAB1   ------>ZmHOX2a(1)             <---------------AtSPL3 ------->ARR14(2)   --------->WRKY18(1) <---------ARR11(3) <----------DOF2   ---------->DOF2---------   gaatacccaaggaggaatcaaagtcaagcgacagattaataatatcatagatggtcctgttcttttttgtaattagaaggaaagagtatgtacatatcct  4953800                                                 <-----------GT1                                                 --------->ZAT6                                              <---------ICU4                                              <---------AHL20(2)                                              --------->AHL20(2)                                             <---------YAB1                                           <--------ATHB1                                           --------->ATHB51         <---------YAB1                    <---------ICU4         --------->ICU4                    <--------HAHB4       --------->YAB1                     <---------ATHB51         <---------ICU4     --------->ARR11(3)                   --------->ICU4           --------->ATHB12     <---------ARR11(3)                   <---------ATHB12         --------->YAB1    --------->RVE1(1)                     --------->AHL20(2)       -------->HAHB4    --------->CCA1(1)                 --------->AHL20(2)          --------->ICU4 ------->YAB1          <---------ZAT6 ------------>CBF            <---------YAB1 <---------WOX13(1) ->ZmHOX2a(1)      <---------YAB1  <---------AHL20(2)   <---------DAG2           <---------YAB1 --->TOE1(2)  <-----------GT1     --------->AHL20(2)    <----------DOF2  ------------>CBF     <------ --->TOE2(2)<---------WOX13(1)    <---------AHL20(2)   <---------DAG2  <-----------GT1       <------- -ARR14(2)--------->ATHB12   <----------DOF2 --------->ICU4       <---------ATHB12        <----------DOF2 >ARR14(2)<---------ICU4     <---------DAG2--------->YAB1    --------->TOE2(3) --------->ATHB12   atgaaaatatcatgattaactattagtgatactttattaattcaataattaatactacctttttcttaatgattaaccaattgattaatgtgcttaatgt  4953900                     ------>ZmHOX2a(1)                --------->YAB1               <---------ATHB12              ------>MYB83           ------------>CBF<---------AHL20(2)                                              <---------AHL20(1)         <-----------GT1  --------->AHL20(2)  <---------ATHB51                             --------->AHL20(1)      --------->TOE2(3)--------->REM1(1)      <---------AHL20(2)              --------->YAB1 -----RAV1(1) ------>MYB46(1)          --------->ZAT6               --------->YAB1         <---------ARR11(3) --TOE2(3) --------->MYB46(3)      <---------MYB59    <----------DOF2      ----------->GT1 --------->ARR11(3)   tgttgttacattaaccaatcgtcctacatttaatgggcctaatactaaataatgggccttaacgagcttatcatgttcagttataaactcaaatattttt  4954000                                      <---------MYB52(2)                                    --------->ZAT6                                 --------->ARR14(2)                              <---------ANAC55(2)                              --------->ANAC46                              --------->ANAC58                                                      -                              --------->ANAC58                                                      <             <---------ALFIN1 --------->ANAC55(1)                                                   -    --------->ARR11(3)       <---------LBD16                        <---------AHL20(2)     ------->TEIL    <---------ARR11(3) --------->ANAC58                             ----------->TBP       <---------CCA1(2)    --------->GLK1(2)  --------->ANAC55(2)                        ----------->TBP --------->At4g35610   --------->CCA1(1)   <---------ANAC55(2)                        --------->AHL20(2)--------->ZAT18 -   --------->RVE1(1)   --------->ANAC58       <------ZmHOX2a(1)   <---------AHL20(2)<---------ZAT14 - --------->AHL20(2)    --------->ANAC46 --------->MYB52(1)      ----------->TBP   <---------At4g35610   taaaaaaatcttcttccacttgaatacgaaacacggaaacactaacgaggaagagaacgtgaagctatatatatatgtctcgagagctcactgtatctct  4954100  <------NtERF2--------->ANAC58            --------->ARR14(2) <---------RAP2.6(3)                       <---------ARR14(2) ------>NtERF2 --------->ANAC58           ------>MYB46(1) -------->ANAC46 <---------ARR11(3)       ------>MYB83<---------ZAT2 ---------ATERF1(2)                  <-----------GT1  <---------At4g35610 -------->ATERF1(2)                --------->AHL20(2) --------->At4g35610 -------->RAP2.6(2)           ------>ZmHOX2a(1)       --------->ZAT2               ---------->DOF2  < -------->DEAR3(1)           --------->TOE2(3)  --------->AtLEC2              ------>ZmHOX2a(1)   <--   tgccgccatagcttcacaagctctaacatttcctcaattaaaccaaatccatgctcagctcattgtattcaattctcttcctcgacaaagctactgggct  4954200                            <---------SPL7                           <---------ANAC58                           <---------ANAC46                       --------->ATERF1(1)                       <------NtERF2                       --------->DEAR4(2)                      <---------ATERF1(1)                      ------>NtERF2                     --------->ANAC46                     --------->ANAC58                     --------->ANAC58                    <-------MYC2                    ------->PIF5  --------->RAP2.3(3)                    <-------PIF5  --------->RAP2.3(2)                    ------->MYC2  <---------ANAC46<------NtERF2                    <-------PIF4  --------->RRTF1(3)                    ------->MYC3  --------->DEAR3(1)                    ------->PIF4 --------->ATERF1(1)                    <-------MYC3 <------NtERF2    <---------At4g35610                   --------->ANAC46            ------->MYC3                   --------->ANAC58            <-------MYC3             <---------At4g35610 --------->DEAR4(2)             --------->At4g35610 --------->RAP2.3(1)             --------->ZAT2<---------ANAC58    <---------LBD16            <-----------RAV1(1) <---------RAP2.3(1)          ----------->RAV1(2) --------->ZAT14 --------->ANAC46          <---------At4g35610 <---------ZAT14 <---------O2          --------->At4g35610 --------->SPL7<---------ALFIN1          --------->ZAT2 ------>NtERF2     <---------REM1(2)          <---------ZAT2--------->DEAR3(1) --------->ZAT14     --------->YAB1--------->ANAC58------>NtERF2<---------DEAR3(1) ---------ANAC46 <---------ALFIN1--------->ORA47(2)                              --------->ARR11(3) -------ANAC46  --------->ZAT14 <---------ATERF1(1)                ----------->HVH21   tcgcgtataatcagctgctgcacgcgcctccgtgcgccgtcttactacacgcggctcattttcgattcagtgacattccctaatgtcttcgttgtcaatt  4954300                                                                      <---------ANAC46                                                               ------>ZmHOX2a(2)                              <---------ANAC58                <------ZmHOX2a(2)                              <---------ANAC58               --------->ARR14(3)                         --------->CCA1(2)                   --------->ARR11(3)         <---------DAG2              --------->HSFB2a(2)                            <---------ARR14(2)         <----------DOF2              <---------HSFB2a(2)                            --------->ARR14(2)   ----------->HVH21              --------->HSFC1(1)                             <---------AGP1       <---------SPL7              <---------HSFC1(1)   --------->YAB1            <---------ARR11(3)   ----------->TGA1    --------->AHL20(2)  --------->ARR14(2)                   <---------ARR14(3) ----------->RAV1(2)    <---------AHL20(2)  <---------ARR14(2)               ---------->DOF2      <---------YAB1  <XXXXXXXXXXXXXXXXXXXXMIR822 <---------ANAC46<---------------------WRI1   ---------->TaMYB80 <------   ccatgtttaaatacttctcgaagatggatatggcgaatgatgttcttcgtctgtatgaacaaagatctcgttgtgggattatgcctgacgctttttcttt  4954400                           <---------LBD16                          <-------TEIL                         --------->GLK1(2)                         --------->CCA1(2)                         --------->ARR14(1)                        <---------ARR14(2)                        --------->ARR14(2)                        --------->ARR11(1)                        <---------GLK1(2)                       --------->HSFB2a(1)                       <---------HSFC1(2)                       <---------HSFB2a(1)                --------->At4g35610                --------->ZAT2                ----------->RAV1(2)                                                            ------             --------->RAP2.6(3)                                                               <-----            --------->ARR14(2) --------->ARR14(2)                                      <------ZmHOX2a(1)     <---------YAB1   ----------->ARR10                                       <---------MYB52(1) ----DOF2   <---------ARR14(2) <---------ARR14(2)                        <------ZmHOX2a(1)-----------   ccctgttgtgatcaaatcggctgggagattcgggattttgtttcaggcccttgttgagaagttgggattttttaaggacccttatgtgaggaatgtgata  4954500                                    --------->ANAC46                                    --------->ANAC58                                    --------->ANAC58                                 <---------ZAT18                                 <---------ZAT14                                 --------->ZAT18                                         --------->ATHB12                                 --------->ZAT14                                         <---------ICU4 <---------ARR14(2)       <---------ZAT14                                 <---------YAB1--------->ICU4 --------->ARR14(2)       --------->ZAT14                                 ----------->HVH21 --->ICU4               --------->At4g35610                             <---------At4g35610   <------ ----YAB1               <---------At4g35610       <------ZmHOX2a(2)     --------->At4g35610<---------GLK1(1) >GT1  ------->TEIL <-----------HVH21  ---------->DOF2           ---------->DOF2        <---------YAB1   atggatatgtatgtgaagcatgagtcagtggagagtgcacgcaaagtgttcgatcaaatttctcagagaaagggttctgactggaatgtgatgatttctg  4954600  Previous    Next  AGI:  At1g14470.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G15930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80769.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4954075    to: 4955697    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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