Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ANAC46        <---------ANAC58        <---------ANAC58 ---->ATHB12   ------>ZmHOX2a(2) -----ICU4    <------ZmHOX2a(2) ----YAB1    --------->ARR14(2) --->ICU4    <---------ARR14(2)                                          <---------ATHB51 ->YAB1<---------STY1(2)                                --------->ARR11(3)--------->YAB1 --ICU4--------->ZAT2                                   <---------ARR11(3)--------->AHL20(2) -YAB1 --------->STY1(2)     <---------ICU4       <----------DOF2        <---------ATHB12        ----   attgagactagcttggatccaagacgtttcatcttcaccctcagtcttctcgcttgaagttctctgagtcttccaattatacaaaaacaccttcttctcc  4952500                                                                                              <------                                                                                           <------NtERF2                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                          <---------MYB46(3)                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                          <---------ERF1                                                                                          <---------DEAR3(2)                                                                                          <---------RAP2.3(1)                                                                                         <---------ATERF1(2)                                                                                         <---------RAP2.3(3)                                                                                         --------->ATERF1(2)                                                                                         <---------RAP2.3(2)                                                                                         <---------DEAR3(1)                                                                                        --------->RAP2.3(1)                                                                                        --------->ATERF1(1)                                                                                        <------NtERF2                                                                                       <---------ORA47(2)                                                                                       <---------RAP2.3(1)                                                                                       <---------RAP2.6(1)                                                                                       <---------ATERF1(1)                                                                                       <---------DEAR4(2)                                                                                       --------->LBD16                                                                                       ------>NtERF2                                                                                       <---------ERF1                                                                                      <---------ATERF1(2)                                                                                      --------->ATERF1(2)                                                                                      <---------DEAR3(1)                                                                  --------->ARR14(2)  <---------RAP2.3(2)                                                                  <-----------ARR10   --------->DEAR3(1)                                                       <---------MYB46(3)        <---------ANAC58                                                    --------->ATHB12             <---------ANAC58 ---                                            --------->GLK1(2)     --------->GLK1(2)  --------->ATERF1(1)         <---------MYB52(1)                 <-----------ARR10    <---------GLK1(2)   <---------LBD16   ------>ZmHOX2a(1)           <---------LBD16  --------->MYB52(1)<---------ARR14(2)<---------ATERF1(1) -->ZmHOX2a(1)   ---------->DOF2   <---------ARR14(2) <---------WOX13(1)    <-----------RAV1(1)  ----   ttctccttcccgttattcccaaagactcgactactcggaaactgagaatctaactgattgttactgagaatctcgacgttgttgctcgccggcggctcaa  4952600                                                     <---------ANAC55(2)                                                     <---------ANAC46                                                   ==================================HOX2a_HOX2a                                                   ------>ZmHOX2a(2)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                <------ZmHOX2a(1)                                              --------->LBD16                 --------------->AGL15                                             <-----------RAV1(2)   --------->ANAC58                                             <---------HSFB2a(2)   --------->ANAC46            ======                                             --------->HSFB2a(2)   --------->ANAC58       --------->At4g35610   --------->GLK1(2)                    <---------MYB46(3)  --------->TOE2(3) ------>ZmHOX2a(1)------   <---------ARR14(2)              <------ZmHOX2a(1) --------->ANAC55(2)      --------->LBD16  ======   --------->ARR14(2)    <---------GLK1(1)   <---------LBD16--------------->AGL15  <---------YAB1   ------->TEIL          --------->GLK1(1)<---------ARR14(2)<---------------AGL15--------->CCA1(2) ---WRKY38(1)        =====================================HOX2a_HOX2a         <---------------AGL15 ---->GAMYB<------ZmHOX2a(1)       =======================HOX2a_HOX2a    <----------DOF2  <---------At4g35610 ----->MYB46(3)      <------ZmHOX2a(1) --------->ALFIN1     ==================================MADS_MADS   cgacgaatctcgaggaagtaagaggagatttccatgaggaagtggttccaggatcgcgtaaacctttagaagcaactttcctgatatgagtaagctcctt  4952700                               ---------->DOF2                            --------->TOE1(3)                            --------->TOE2(3)                        <---------GLK1(1)                    ------>ZmHOX2a(2)                    ================HOX2a_HOX2a                   <------ZmHOX2a(2)                   =================HOX2a_HOX2a                  --------->ARR14(2)<---------ETT(1)     <-------TEIL <---------ARR14(2)--------->ANAC46  <---------At4g35610   --------->GLK1(1)                   --------->LBD16  --------->At4g35610 --------->LBD16              <----------DOF2 =========================HOX2a_HOX2a----------->RAV1(1)   --------->HSFB2a(2) >ZmHOX2a(1)  <---------LBD16------>ZmHOX2a(1) <----------DOF2       <---------ARR11(3) ==========================HOX2a_HOX2a      <-----------GT1<---------HSFB2a(2)   cttcagatgcaatttgctcggatccgaaatccttaaacccgacatttttctttctttctctccagaaaacaaatcttacatagttttagactaatcttct  4952800                                  <---------At4g35610                                  <---------ZAT2                                <-----------RAV1(2)                               --------->LBD16                              <---------ANAC58                              <---------ANAC58                      --------->LBD16                    <---------LBD16            --------->ARR11(3)                   --------->MYB52(1)          <---------ARR11(3)                                   -                  <---------ALFIN1--------->At4g35610                                <------ZmHOX2a(1)           --------->ZAT14    <---------ANAC46 --------->GLK1(2)                 ---------->DOF2    -           <---------ZAT14   <---------LBD16  <---------GLK1(2)        --------->CCA1(2)     --------   ccgaactatttagtatagtcacaccggaaattgcgcaggtgataccaagaatctttttaagaagaaacagaagatgtgagagcgaaaggatgagagtggg  4952900                                                    <------------CBF                                             <---------WOX13(1)                                            <------------CBF                                        -                                           --------->ATHB12                                      <---                                           --------->MYB55(2)                                   -----                                           <---------MYB46(3) <---------DAG2                    <----                                          <---------YAB1      <----------DOF2                   <----                                         --------->At5g28300 <---------ANAC58                  <-----       ---------->DOF2                <---------LBD16<---------WOX13(1)                     <-------- -------->At4g35610                   <---------At5g28300    <---------ANAC58    ---------->DOF2----- -------->CCA1(2)                    --------->MYB52(1)--------->ATHB12         --------->AHL20(2)  < ->ALFIN1             *TSS      --------->AHL20(2) --------->ATHB12          --------->YAB1 ---------   agagatgaagaaagagattactgaagaaattcaaaaaattcacggtgattggctgattgatttgctttttatcaaacaaaaataaaagaatgaataaaat  4953000                                                                                                   --                                                                                                  <--     ---------->DOF2                                                                             ---- -------->AHL20(2)                                                                               <--- ------ICU4                                                                                      ---- ---->ICU4                                                            <-----------GT1            <--- -----AHL20(2)                                                     <---------GLK1(2)             <--- -----ATHB51--------->ANAC58                            ----------->HVH21 ------>ZmHOX2a(1)      ---- ----AHL20(1)                   ----------->GT1         --------->ALFIN1  =========================== -AHL20(2)  --------->ANAC58 --------->DAG2          <---------DEAR3(1)   =========================== ---->AHL20(2) ---------->DOF2----------->GT1     <------ZmHOX2a(1)--------->ARR14(2)           ----- ---------AHL20(2)    ----------->GT1     <-----------HVH21        <---------ARR14(2)           <---- >AHL20(2)  --------->ANAC46---------->DOF2 --------->ETT(1)   <---------LBD16              <--------   aattaaaaaaagacacgaaaagaaatgtgaaaaagtgaaaaatgggtcggaaggagcggtgacgctcgggattctccttcttctggtctctctgtgtcag  4953100 ---->ZmHOX2a(2) ----ZmHOX2a(2) ----->ARR14(2)                                                                       --------->AHL20(2) ------ARR11(3)                       <---------REM1(2)                              --------->AHL20(2) ----->ARR11(3)         --------->ANAC58                                             <---------AHL20(2) ------AGP1 <---------ZAT14           <---------ZAT14                                <---------ATHB51 ------ARR14(2)         --------->TGA1a                               <---------AHL20(1) ----->AGP1 --------->ZAT14    --------->ZAT14           <-----------RAV1(1)         <---------ATHB12 ====HOX2a_HOX2a        --------->ANAC46           ---------->ID1     --------->AHL20(1)           -- =====HOX2a_HOX2a       --------->ANAC58          <-----------GT1     --------->AHL20(2)       <----- ---->At4g35610         --------->O2  --------->ZAT14<----------DOF2  <---------AHL20(2) <---------AHL20(2) -----CCA1(2)           =================================bZIP_DOF    --------->AHL20(2)  --------->AHL20(2) ---HVH21  ----------------------->TaNAC69(2) <----------DOF2        <---------AHL20(2)  <---------ICU4   atctaaaacaagtcttcactcttctcacgcctcttcagtcttcactgtcttttttctttttgttgcccaaaataaattggagaacaaataattttttctt  4953200                                                                           <---------O2                                                                           --------->TGA1a                                                                           =======================bZIP_DOF                                                                           --------->O2                                                                           --------->ANAC58                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                     <---------ARR11(3)                                       ==============================================bZIP_DOF                                       <----------DOF2               --------->ARR11(3)          <---                                    <-----------GT1                  <---------AGP1     <---------AHL20(2)                                    --------->ARR11(3)              <---------CCA1(2)  <----------DOF2        --------->YAB1              <---------ARR11(3)          <----------DOF2    ------>ZmHOX2a(2)       <-------TEIL          <------ZmHOX2a(1)        <---------ARR11(3)   --------->ANAC58      <--- ------->MYB52(2)       --------->CCA1(2)             --------->ARR11(3)   <---------TGA1a      ----- -----DOF2             --------->ARR11(3)     ----------->HVH21 =====================bZIP_DOF--------   ttagttgcattcataacaaaatatagatataggagtattatcttttctgtgacaaatgtcttcagtctttagatctcacgtctgatctgttttattgttt  4953300                                         ------->MYC3                                   --------->YAB1                                                 ---                                   <---------ICU4                                                <---   <---------MYB52(1)              --------->ANAC46                                            <----- ---MYB46(1)      ----------->RAV1(1)    <-------MYC3                                       --------- ---MYB83    <---------ANAC58    <-----------GT1                                           --------->TOE2(3) ---->MYB59  <---------ANAC46  <---------AHL20(2)   <---------At5g28300                 <-----------GT1 ->ATHB12    <---------ANAC58  --------->AHL20(2)  <-----------GT1                  <---------AHL20(2)   ggtccgtttgaaatgtcgtccaacaaaaacgaattaaacatcacatgcctattttactgccattgtttttcttagaatacttatattttcttacattatt  4953400  Previous    Next  AGI:  At1g14460.1    Description:  DNA polymerase-related. similar to STI (STICHEL), ATP binding / DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT2G02480.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80768.1); similar to Os12g0209300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066394.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46929.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain DNA polymerase III, subu Range:  from: 4948743    to: 4952922    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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