Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------ZAT2                                                --------->ZAT2                                              <-----------RAV1(2)                                             <------NtERF2                                             <---------ZAT2                                             --------->ZAT2                                             <---------At4g35610                                            ----------->RAV1(1)                                           <-----------RAV1(2)                                          <------NtERF2                                          --------->At4g35610                                         <---------ATERF1(1)                                         =================RAV                                         ----------->RAV1(1)                                         ------>NtERF2                                        --------->ANAC46                                       <---------LBD16                                       --------->LBD16                                      --------->DEAR3(1)                            <-----------RAV1(2) --------->At4g35610                            ============================RAV                                   <------               --------->At4g35610 <---------ARR14(2)                                      --------->ARR11(3)               <---------At4g35610 --------->ARR14(2)                                      <---------ARR11(3)      <---------At4g35610   =========================RAV                                  <---------At4g35610      --------->At4g35610 ----------->RAV1(1)--------->At4g35610                          <---------GLK1(1)   <-------TEIL--------->ZAT2    ----------->ARR10                                   <---------At4g35610  --------->CCA1(2)       ================================RAV ----------->GT1        --------->At4g35610 <---------ARR14(2)       =============================RAV  --------->ZAT14          <---------LBD16 --------->ARR14(2)  <----------DOF2 --------->MYB46(3)    <---------ZAT6 <---------MYB52(1)<-------- --YAB1        <---------ZAT2  <------ZmHOX2a(1)<---------At4g35610  ------------>AtMYB77 --------->GLK1(1)   tcagatacagctaaatcagctgtctttgccacaggaagaaccgcggcagcagctgcaactagtgttgtcaatagcagttacttctccagcggagctcttt  4898700                                                     <---------ATERF1(1)                                                     ------>NtERF2                                                    <---------DEAR3(1)                                                   --------->LBD16                                   <---------At4g35610--------->At4g35610                    --------->At4g35610            <---------LBD16        <-------TEIL<---------ZAT2 --------->At4g35610<------NtERF2                             <----        --------->ZAT18           ------->TEIL   <---------LBD16--------->At5g28300       --------->ARR14(2)     --------->At4g35610        --------->LBD16--------->ARR14(2)                         <---------ARR14(2)    <---------MYB46(3)         --------->RAP2.6(2)--------->ANAC46      <<<<<<<<<<<<<<<<<LFY    -----    <-----------RAV1(1)   ---------->DOF2------>ZmHOX2a(2)     ----------->GT1      <---------ARR14(2) ----DOF2           <---------At4g35610--------->ARR11(3)  --------->ANAC58         --------->ARR14(2) --DOF2 <---------ZAT18--------->At4g35610   <---------SPL7--------->ANAC58     ----------------->AGL1   ggctgtctggtgcattagagagagctgctaaagccgcatctgatctcggtacccgcggctcaaggcagtgaatagaccaatggcccgattcagaaccgta  4898800                                  --------->YAB1                         --------->YAB1          <---------AHL20(1)    <---------YAB1                   ------>MYB46(1)          --------->ARR11(3)  --------->YAB1                     ------>MYB83          <---------ARR11(3)  <---------ICU4        ----------->GT1  <---------AHL20(2) -----ARR14(2)          <---------At4g35610       <---------ANAC46  --------->AHL20(2)              - ---->ARR14(2)       ---------->DOF2 --------->MYB52(1)        <---------MYB59                   ----   ttcgtctgtgaatatatatgatgcaaagctgatcatgaataactggctcatgaagtgtgataagaccaaattttatcaaaacgaataccatatagaaatc  4898900      --------->ZAT14                               ------>MYB83      <---------ZAT14                  <------MYB46(1)       --------->ZAT6      --------->ARR14(2)               <------MYB83 ------>MYB46(1)--------->TOE2(3)      <---------ARR14(2)<---------At4g35610       <---------MYB59 --------->ATHB12            <------ ---------->DOF2    <---------YAB1     ----------->GT1<---------ARR11(3)       --------->GLK1(2) -------->YAB1   --------->ICU4        <---------MYB46(3)  <-----------GT1     <---------ARR11(3) ----->WOX13(1)--------->ANAC55(2)    --------->MYB59--------->REM1(1)     --------->YAB1     -------   tatcaaagtatactctcacatgatgatgctgatatagagtttggttacattacctacatcttaactcttcattagtagcataatcttttttcttatataa  4899000                                                                               ------------>CBF                                                                           --------->ALFIN1                                                                          ------->MYC2                                                                          ------->MYC4                                                                          <-------MYC2                                                                          <-------PIF5                                                                          <-------MYC4                                                                          ------->PIF5                                                                          ------->MYC3                                                                          <-------MYC3                                                                         --------->PIF3(3)                                                                         <<<<<<<<<<HY5                                                                         --------->bZIP60(2)                                                                         <---------PIF3(3)                                                                         <---------bZIP60(2)                                                                         ============================                                                                         >>>>>>>>>>HY5                                                                         --------->O2                     <--------P                                          <---------O2  --------->ANAC46                     <---------WOX13(1)                                  --------->TGA1a          <---------YAB1                                                 <---------TGA1a------>NtERF2      --------->AHL20(2)          <---------------AGL15                 <<<<<<<<<<AtbZIP1    <---------WOX13(1)  --------->ARR11(3)                           ----------------->PIF3(1) <---------YAB1    <---------MYB46(3)                <---------CCA1(2)---------------->PIF3(2) ---AHL20(2)      <---------TOE2(3)            --------->ARR11(3)    <-----------------PIF3(1) -->AHL20(2)      <---------YAB1 <-----------------AGL3             --------->ANAC46   <----------ID1   tttctgatttatatcattctatggttgatattgattcaatatttggatagatgttgtatccatagagcttaggccacgtggcacaatttgcgccaaaaaa  4899100                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                               <-----                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                             ------>NtERF2                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                          --------->LBD16                                                   --------->ANAC58                       ------>NtERF2                                        --------->HSFB2a(1)                           <---------ARR14(2)                                       --------->ARR14(2)                         ------>ZmHOX2a(1)--                                       <---------ARR14(2)                        --------->TOE2(3)---                                       <-----------ARR10                  <---------GLK1(2)--------->ERF1                                       <---------ARR11(3)                --------->HSFC1(2)--------->RAP2.3(1)                                       --------->ARR11(3)                <------NtERF2--------->ARR14(2)                                       <---------ARR11(1) <---------ICU4 <---------HSFC1(2)--------->RRTF1(1)                                      <---------CCA1(2)  <---------ATHB12<---------HSFB2a(1)---------               --------->ZAT14   --------->ANAC46  --------->ANAC58      --------->At4g35610---------         --------->MYB52(1)    <-----------GT1    --------->WOX13(1)     <---------ZAT2 <---------LBD16       ---------->DOF2     <----------DOF2     <-----------HVH21         <---------At4g35610--------- =================bZIP_DOF<---------ICU4*TSS  --------->ANAC46           --------->HSFB2a(1)---------   tcaaatccaaaaaacagagaagtcatcatcttttcactccaaatcttccagtcactcaaatcattctctcatggcagcttcttcctcaattccgccgtca  4899200        --------->TOE2(2)       --------->MYB46(3)     --------->ARR14(2)     <---------ARR14(2)    <---------MYB52(1)   --------->At5g28300  --------->RAP2.3(2)  --------->RAP2.6(2) --------->RAP2.3(1) ------->DEAR3(1) -------MYB55(2) ------>DEAR3(2) ----WRKY12 -->WRKY18(1)          <---------ARR14(2) ----HVH21             --------->ARR14(2) -ATERF1(2)            <-----------ARR10 >DEAR3(1)            <---------CCA1(2) >RAP2.3(3)           --------->GLK1(1)                 --------->ANAC46 >RAP2.6(2)       --------->ANAC58          <---------DAG2                            -------->P ----->GAMYB   <---------SPL7            ------->GAMYB  <---------ALFIN1       --------->ANAC46 ------>MYB46(3)  --------->ANAC58       <---------ALFIN1                      --------->ANAC58 >RRTF1(3)    <---------MYB46(3)        --------->MYB46(3)                     --------->ANAC58 >ATERF1(2)  <---------MYB52(1)         <---------MYB55(2)      --------->ATHB12   --------->HSFC1(2) >RRTF1(2)  --------->LBD16       ------>ZmHOX2a(1)    <---------LBD16        --------->LBD16 >RAP2.3(2) <-----------HVH21  ------>ZmHOX2a(1)   ------>ZmHOX2a(1)      --------->ANAC46 ----------   accgccgtaacctccgtcgttcgcaaatctctcctcctctcaaccaccttctccttccccgcttcttcattgtctccctccacgaaactaccacaaagac  4899300                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                               ------                                                                                              -------                                       --------->MYB46(3)                                     <------                                     <---------ARR14(2)                                      <------NtERF2                                     --------->ARR14(2)                                      <-------                                   --------->LBD16                                           <-------                               --------->ARR14(2)                                            --------                             --------->LBD16                                                <--------                            --------->ANAC46                                                <--------                           <---------LBD16                                                  ------>NtERF2                          ------>ZmHOX2a(1)     <---------ANAC58                           <---------DEAR3(1)                         <---------ALFIN1    <---------MYB52(1)        ---------->DOF2     <---------RAP2.3(2)                 --------->ZAT2<---------ARR14(2)              --------->TOE1(2)           <---------RAP2.3(3)                <---------TOE1(2) --------->ANAC46             --------->TOE2(2)  <---------ZAT14 <--               ------>ZmHOX2a(1) <---------LBD16<---------ANAC58--------->LBD16   <---------ZAT18 --- >DOF2--------->ATHB12 ------>ZmHOX2a(1)<---------ALFIN1      --------->DEAR3(2)  --------->ZAT14 <--   acattcaaagattgctcctagcttcctcctccgcatccgcatccaccgttccttccgattccaaaccggcgaagaaagaaacagtctacttcgacggcgg  4899400           --------->ARR11(3)       --------->LBD16      <---------ANAC55(2)      <---------ANAC46     <---------LBD16 ------>GLK1(1) --NtERF2  <---------ARR11(3) ---->ATERF1(1) --->LBD16 --------->AGP1                                             --------->ZAT14 -->ALFIN1<---------GLK1(1)                                           <---------ZAT14 ---DEAR3(1)                                                       <---------At4g35610 --------------WRI1                                  --------->PCF2--------->At4g35610 --LBD16  --------->GLK1(1)                    <----------DOF2     --------->ZAT2 ->ATERF1(1) ------>ZmHOX2a(2)                 ------>ZmHOX2a(1)   <---------ZAT2 -ATERF1(1)--------->ARR14(2)               ------>MYB83          --------->MYB52(2) -RAP2.3(1)<---------ARR14(2)               ------>MYB46(1)    --------->TOE1(3)           --------->TOE2(3) -------ZAT2<------ZmHOX2a(2)             ------->GAMYB        --------->TOE2(3)           --------->TOE2(2) ------>At4g35610                        --------->MYB46(3)  -------->P                 <-----------GT1 -------At4g35610                      <-----------GT1    <---------MYB52(2)        <----------DOF2   agctcattacggagatctattagccaatctcattctaggtctaaccatcctttggctcccactaaccttagctgcagtgtctcgagcttttaaccttcgt  4899500                        <-------GAMYB                        --------->At5g28300                       <---------MYB46(3)                       ----------->GT1                      <---------ANAC46                    ------------>AtMYB77                   ----------->HVH21                  <-----------HVH21                 --------->O2                 <---------O2                 --------->ANAC46         --------->LBD16                ------>NtERF2           <---------LBD16              <---------LBD16   --------->HSFB2a(2)              ---------->CDC5  <---------ANAC58                               ---------->DOF2            --------->TOE2(2)  <---------LBD16     ------>ZmHOX2a(2)     ----------->GT1           --------->MYB46(3) <---------LBD16   --------->ATHB12     ---------->DOF2          -------->P--------->MYB52(1) --------->MYB52(1)       --------->TOE1(1)       <---------MYB52(2)<---------MYB52(1)  <---------At4g35610--------->TOE2(1)    <-------TEIL--------->LBD16<---------ANAC58<---------YAB1  <---------HSFB2a(2)               <---    --------->ZAT18----------->TGA1  ----------->HVH21         --------->HSFB2a(2)    <-------TEIL---   tacaggttcactaacctccgcgtgacggttatttcgggactcaccggagatgatcggagcgatttctcgtacaaagtgataaaagacgttcaagttgtgc  4899600  Previous    Next  AGI:  At1g14340.1    Description:  RNA recognition motif (RRM)-containing protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G01210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48423.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 4897341    to: 4898956    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g14345.1    Description:  oxidoreductase. similar to hypothetical protein [Vitis vinifera] (GB:CAN74870.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 4899140    to: 4899974    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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