Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     >>>>>>>>>MYB98                                                                <-----------GT1 -------->At5g28300                                --------->ARR11(3)         <----------DOF2       < --------->GT1          <-------TEIL               <---------ARR11(3)   --------->HSFB2a(2)        <- ------>ZAT6  <---------AHL20(2)            <----------DOF2--------->DAG2  --------->ARR11(3)     --- -------GT1   --------->AHL20(2)        ---------->ID1    ---------->DOF2  <---------ARR11(3) <------   acagtaacataagtatttatatcacatacacttgtcaaatttgtctctttagagattttaaaaagttatcacttagagaacttttacctgtttggacttt  4896900                --------->ARR11(3)   <---------MYB52(1)                                                           ----------->GT1  <-------GAMYB--------->CCA1(1)                          ----------->GT1      ----------->GT1 <---------DEAR3(2)                            --------->AtLEC2           --------->HSFB2a(2) <---------MYB46(3)                            --------->ANAC46           <---------HSFB2a(2) ----------->GT1<---------ARR11(3)             --------->ANAC58           --------->HSFC1(1) ---------DEAR3(1)                             --------->ANAC58   ---------->DOF2 --------ORA47(1)                           <-------TEIL <---------TOE2(3)<---------HSFC1(1) <------- --------->AtMYB77>>>>>>>>>RAP2.2    --------->AHL20(2)  <---------TOE1(3)>>>>>>>ZML2       --------- ----DOF2----------->GT1           --------->AHL20(2)--------->YAB1 --------->DAG2          <--------   ggacggttagacagataatatctaaaattactccaatttttatatatacatgcaatactaaggtataaaaaaggttctagaatgttaaaatcgttgctga  4897000                                                                    --------->AHL20(2)                                                                   --------->AHL20(2)                                                                --------->ATHB12                                                               <---------ATHB12                                                               <---------YAB1                                                               --------->ICU4                                                              <---------TOE2(3)                                                             --------->YAB1                                                           <---------YAB1                                                         --------->YAB1                                                         -------->HAHB4                                                         --------->ATHB12         ---------->DOF2                                 <---------ANAC58        <---------ICU4        <---------ANAC55(2) <----------ID1                  <---------ANAC58       <---------ATHB12 --------->AHL20(2) --ANAC46                   <---------ICU4              <---------YAB1   <---------AHL20(2) >At4g35610          ----------->GT1                    --------->ICU4  --------->YAB1              - -At4g35610        <---------GLK1(2)<---------ANAC46  --------->YAB1<---------AHL20(2)          -----   aaaaaaacaaaatcgtctatagattgttaatttttgcttcttgtacaaacacttagtaatgattaatgatttaattttaatatgtaaagactgattttta  4897100                                                       <--------P                                                      <---------ANAC58                                      <---------AHL20(1)                                      <---------ARR11(3)                                      --------->AHL20(1)                                      --------->ARR11(3)<---------MYB46(3)                           <---------YAB1       --------->ICU4 --------->AHL20(2)       <---------TOE2(3)     <---------YAB1                    <<<<<<<<<<<<<<<<<LFY -------->AHL20(2)      <---------AHL20(2)   <---------YAB1        ----------->GT1----------->RAV1(1) ---->AHL20(2)   ----------->GT1   --------->AHL20(2) <---------ANAC58    --------->YAB1     <-------   aaataaaaaatagcataagatgaaaatttatgtttcaaaaaatatttgtgattatgggttgtttgagactggaaaataatcaaacaacattgggcctttc  4897200                                                                                            <--------                                  --------->CCA1(2)            ----------->RAV1(1)   <------NtERF2             <-----------GT1  <---------TOE2(3)                <---------ALFIN1     ------>NtERF2         <---------YAB1       <---------TOE1(3)        ---------->DOF2              <---------ZAT18      <---------AHL20(2)     <---------DOF5.7(2)  <---------ARR11(3)            --------->ANAC46<----      --------->AHL20(2)   <---------MYB52(1)   --------->ANAC58              --------->MYB52(1)<---- ---DOF2 <---------AHL20(2)--------->DOF5.7(2)  --------->ANAC58  <------------CBF--------->RAP2.3(1)   atgtagaattttttattacatttagaaccgttaacgatatgggctaactcaagacattaaaggcccaacattgagttactaaacggcgcagtttttagct  4897300                    <---------ZAT14        <---------ANAC58        <---------ANAC46    <------------CBF--------->ZAT14  <---------YAB1 <---------ANAC58        *TSS ---GT1 <---------ANAC58     --------->DAG2                                                <--------- -----DAG2       <---------ANAC58     ------>ZmHOX2a(1)                              ---------->ID1 ------DOF2 <----------DOF2---------->DOF2 <----------DOF2                       <----------DOF2  <--   ttttaaaattgcgtctttttcgttcactgaaaaggtagtccttctctttcccactcacatcatcaacttcatcaattcatcacctttgtctctctttcaa  4897400                           --------->MYB46(3)                        <---------WRKY12                        <---------WRKY38(1)                        <---------WRKY45 --------->ANAC58                       --------->WRKY18(1)                     <---------MYB46(3)  --------->ANAC46                     <------MYB83        ----------->GT1                     <------MYB46(1)     <---------ANAC55(2)                    <---------AtMYB61    --------->ANAC58                   <---------MYB52(1)    --------->ANAC55(1)              ------>ZmHOX2a(2)          --------->ANAC55(2)             --------->GLK1(1)       ----------->RAV1(1)             <---------GLK1(1)      --------->REM1(1)           ------>ZmHOX2a(1)            --------->ARR11(3)    =================================================================== -DOF2      <---------ARR11(3)--------->MYB46(3)               --------->TOE2(3)              ------- -------GLK1(2)   <-------GAMYB   <---------------AGL15        --------->TOE1(3) <---------ARR11(3)   gcttctctgtgtgtgatctccgttggtcaacaacaactacaacaggtaacttctattcttcgattccttaaatttcttctctagagcttagtgaatcaac  4897500                      --------->GLK1(2)           <---------------AGL15                                                <--------------------          <-----------------AGL1                                       ---------->DOF2--------->HSFC1(2)          ===================================================================MADS_MADS<---------HSFC1(2)          <-----------------AG------>ZmHOX2a(1)                     <---------ANAC55(2)  --------->MYB59    --------->WOX13(1)                          <---------ATHB12     --------->HSFB2a(1) ==========================MADS_MADS                         <---------------AGL15    <---------HSFB2a(1) -->MYB52(1)  <---------ARR14(2)                            ----------------->AGL1  ---------->DOF2   gatttaggtctgaacatatttggcaatctgtccttgctcaaatttcgcttgaaaatttcaatcccaaatcatgtaaagctaaatcggaaagttctatgta  4897600                                               <------ZmHOX2a(1)                                             <---------TOE2(3)                                    <---------AHL20(2)                                    --------->ATHB12                                   --------->AHL20(2)                                   <---------AHL20(1)           <---------TOE1(3)                                   --------->AHL20(1)           <---------TOE2(3)                                   <---------AHL20(2)      --------->ICU4                              <---------AHL20(2) <---------GLK1(1)               --------->ANAC58--------->AHL20(2)--------->CCA1(2)                            -------   ---------->DOF2            --------->AHL20(2)--------->ARR14(2)                            <------ <---------HSFB2a(2)          <---------AHL20(1)<---------ARR14(2)                   <---------At4g35610 -WRI1         --------->ANAC58<---------AHL20(2)--------->GLK1(1)                 <-----------GT1   gttcccaaagttgaatcacgaactggaagtaatttaatttattgacttaggatatgttgaaatttttaggttttttgttttgtttttagcttattgagca  4897700                                                                  ------>ZmHOX2a(2)                                                                <---------ARR11(3)                                                                --------->ARR11(3)                                                               --------->YAB1                                                              --------->ICU4                                                            <---------ICU4                  --------->CCA1(2)                         --------->YAB1     <------ZmHOX2a(2) <---------ANAC46                  --------->YAB1 -->At4g35610    --------->ARR14(2)                 <---------MYB52(1)             ================== ---At4g35610    <---------ARR14(2)        <-----------GT1 --------->ICU4          <----------DOF2   gagatggatcatcaatttggatatggtgttgaagttactgggttatctccatctgttactcataatgatcttatcgatttcttctctttctctggtacta  4897800  Previous    Next  AGI:  At1g14340.1    Description:  RNA recognition motif (RRM)-containing protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G01210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48423.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 4897341    to: 4898956    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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