Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------------->AGL15                                                   --------->TOE2(3)                     --------->At4g35610                                                 <---------ARR11(3)                      <-------GAMYB                                                 --------->ARR11(3)          ----------->RAV1(2)>>>>>                   ---------->DOF2          <-------TEIL          ------->GAMYB         <---------MYB46(3)   --------->ARR14(2)                      --------->GLK1(2)   --------->MYB52(1)    --------->GLK1(2)   tcacaaatttgccacaatgttcaaagaagggagagagagagagagattcaataccttgaagagaataacggagataatagcctgaagagtctgttgaaga  4881600                                                                                        --------->ANAC58                                                                                        --------->ANAC58               <------NtERF2                                                          ------>ZmHOX2a(1)              ------>NtERF2                                                         ------>ZmHOX2a(2)             --------->ANAC46                                                      <------ZmHOX2a(2)             <---------DEAR3(1)                                                   --------->ARR11(3)        <---------DOF5.7(2)      <-----------ARR10                                --------->ARR14(2)        --------->MYB52(1)       --------->GLK1(2)                                <---------ARR14(2) --------->ANAC58  <---------ARR14(2)        ------>ZmHOX2a(1)                    <---------ARR11(3) --------->ANAC58  --------->ARR14(2)       --------->TOE2(3)                   ----------->ARR10<--- >>>>TBF1   --------->RAP2.6(3) <---------GLK1(2)                             ---------->DOF2    ----   agaacgcccttaacgacggcagatttagaaacgagattcttctcatcctcatctatcttcgaatgcaatctatatttatccaaagatcctaagcaaatgt  4881700                          --------->GLK1(2)                          <---------ARR14(2)                          --------->ARR14(2)                         <---------ARR14(2)                         --------->ARR14(2)                         <---------GLK1(2)                     --------->ANAC46             --------->MYB46(3)                                --------->ANAC58            --------->ANAC58                         <---------At4g35610    --------->LBD16  <-----------------AGL1          --------->At4g35610 <---------ICU4   --------->LBD16 --------->ANAC46               <-------TEIL --------->ANAC58                   --- ----TEIL   --------->ANAC46                --------->LBD16    --------->ANAC55(2)        --------->WOX13(1) --->TEIL   --------->ANAC58              <---------LBD16      <---------ANAC55(2)      <---------ATHB12   acatccctgaatacacccaatacaccagaatcggcacaaatgtccccagaaattcatctgaaatcacgaaactcatcatctctaattctaatcaatctct  4881800                                 ------>NtERF2                                 ----------->RAV1(1)                                --------->DREB2C(2)                                --------->ANAC46                                --------->DEAR3(1)                   --------->ANAC46                   --------->ANAC58                   --------->ANAC58                <---------ARR14(2)      --------->MYB46(3)     <---------ALFIN1 ----------->RAV1(1)        --------->MYB46(3)                                            --------->YAB1 <---------ALFIN1  --------->ANAC55(2)                                                   <---------YAB1 --------->ANAC46  <---------ANAC55(2)                                     <------ZmHOX2a(1)      <<< ------>ANAC46  --------->ARR14(2) <-----------RAV1(2)                --------->ANAC46 --------->YAB1   cccccacaacaactcgagaatacgaaatcaaacaccgccagaagaaaatcgcatcactcttcgctaaactacacgaaggagagattagattataatcttc  4881900                                                                                    <---------ANAC58                                                                                    <---------ANAC55(2)                                                                                    <---------ANAC58                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                               --------->CCA1(2)                                                                              >>>>>>>>>GATA-4                                                                              --------->AGP1                                                                              <---------ARR11(3)                                                                              >>>>>>>>>GATA-3                                                                              >>>>>>>>>GATA-1   <----                                                                              >>>>>>>>>GATA-2   <----                                                                    --------->ICU4  --------->ANAC55(2)                                                                =======================HOX2a_HOX2a                                                                ======================HOX2a_HOX2a   <          <---------ANAC46       --------->HSFB2a(2)         <------ZmHOX2a(1)--------->ARR11(3)-----          <---------ANAC58       <---------HSFB2a(2)         =========================HOX2a_HOX2a   -          <---------ANAC58   <---------DEAR3(1)            *TSS <------ZmHOX2a(1) --------->MYB52(1)<    ------>ZmHOX2a(1)  <----------DOF2                    <---------At4g35610--------->GLK1(1)<------ <<<<<<TBF1  <---------DEAR3(1)<------NtERF2<------ZmHOX2a(1)==========================HOX2a_HOX2a---   ttcttcctcgttgcttcggtgttttctttcgtcgtcgagaagaataggagaagaaaatgcagaggaggagatgatgaagagatctaacgtgatttttcag  4882000                               <----------DOF2                              <---------ANAC58                              <---------ANAC58                              <---------ANAC46                          ------->MYC2                          <-------MYC3                          ------->MYC3                          <-------MYC2                          <-------PIF5                          <-------MYC4      ------>MYB46(1)     ------->PIF5      ------>MYB83        ------->MYC4    <---------MYB59      <---------PIF3(3)    --------->MYB46(3)   --------->O2   --------->ANAC58      =================bZIP_DOF   --------->ANAC58      >>>>>>>>>>HY5  --------->PCF2         --------->PIF3(3)             <---------ZAT2 --------->TCP20         <---------TGA1a              ------>NtERF2 --------->TCP15(1)      --------->ANAC46            --------->DEAR3(1) <---------PCF2          <---------O2               --------->ATERF1(1)            --------->AHL20(2) -----ZAT2               --------->TGA1a            <------NtERF2                  <---------AHL20(2) -----At4g35610      <----------------PIF3(2)      ------>NtERF2                   --------->AHL20(1) ---------TCP23     <-----------GT1                <---------ATERF1(1)         --------->ICU4 ---->ZAT2        <---------HSFB2a(1)             --------->RAP2.6(2)        <---------At4g35610 ---------->HVH21 --------->HSFB2a(1)        <---------WRKY38(1)           --------->ZAT18 ---------TCP15(2)<---------HSFC1(2)         <---------WRKY12       <---------AHL20(2) <-----------GT1 -----RAV1(2)     --------->HSFC1(2)        --------->WRKY18(1)     --------->AHL20(2) --------->YAB1 ------>ALFIN1   <---------KAN4(2)         <-----------HVH21       --------->YAB1  <---------AHL20(1)   gtgggacccaactattcggaattttccacgtggctttaaacgaatggtcaaggcgccaactggtttcaattttaatgtgtgctaattaattacaatctct  4882100                                               --------->ANAC58                         ----------->GT1       --------->ANAC58                --------->CCA1(2)             <-------MYC2                         --------->ATHB12           <---------AHL20(2)                 ------->MYC2                     --------->ATHB12          --------->AHL20(2)                  ------->MYC3                     <---------ICU4          <---------AHL20(2)      --------->ATHB12                             -------->ATHB1          --------->AHL20(1)     <---------YAB1--------->ANAC46               <---------YAB1 <-------    <---------AHL20(2) ----------->GT1        <-------MYC3   ---------->DOF2 <---------ARR11(3)   acatattaaaaatttaatatacgaatggtgaaaatatgattagaaacacatgccaaaaaacataaaagtctaaaaacaaaatcattgatttgattttgcc  4882200                                             --------->O2                                             <---------O2                                      <------NtERF2         --------->YAB1                                     <---------MYB46(3)    <---------ATHB12                      ----                                    <---------RAP2.6(2)    --------->ICU4                     -------                                  <------MYB46(1)          <---------ATHB51                   <------                                  <------MYB83        <------MYB83                --------->ATHB12                                 <---------MYB46(3)   <------MYB46(1)             <---------AHL20(2)                                 --------->MYB55(2) <--------P   <---------ANAC46<---------AHL20(2)  --------->ZAT14       <---------ZAT18  -------->P<-------GAMYB--------->ALFIN1 --------->AHL20(2) ----GT1 <---------CCA1(2)       <---------AtMYB61<---------ANAC46 <---------ANAC46 <---------WOX13(1)   tctctgttctcttatctgtacaattgtggacacatttggtggctacctcgtggggttggcaataatgtggtgtttatcgtttattaattgatatttctat  4882300                                                   --------->ATHB12                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                      --------->AGP1                                      <---------ARR14(2)                                      <---------ARR11(3)                                      --------->ARR14(2)                                      --------->ARR11(3)                                      <---------AGP1 <---------GLK1(1)   <---------ANAC55(2)               <---------CCA1(2)   ----------->GT1                   <------------------------ANAC81 ----->AHL20(2)                     ----------->ARR10--------->GLK1(1)                           <--- -->HSFB2a(2)--------->TOE2(3) --------->AHL20(2)<----------DOF2                      ----------->GT1 ---HSFB2a(2)--------->TOE1(3) <---------AHL20(2)<---------WOX13(1)<-------TEIL    <---------REM1(1)   aaaatatgtaaaaaacattaactcattagtagtttaattagatcttctctgcttgatttccgattcagattcaaaacaattagagaagtagcaaaaaatg  4882400                                                                        --------------->AGL15                                                                        <---------------AGL15                                                                        ------->GAMYB                                                                       --------->MYB46(3)                          <---------TOE2(3)                            ----------------->AGL3                         --------->MYB52(1)                            ----------------->AGL2                --------->ARR11(3)                            <---------AHL20(2)                <---------AHL20(2)                            --------->AHL20(2)                <---------ARR11(3)                           <---------AHL20(1)                     <                --------->AHL20(1)                           --------->AHL20(1)                     -                --------->AHL20(2)                           --------->AHL20(2)          <---------ZAT18                <---------AHL20(1)                      --------->AHL20(2) >>>>>>>>>>>>>AGL25 ------- ------ANAC46  --------->AHL20(2)           --------->YAB1   <---------AHL20(2)          --------->ZAT18   tgtgtaagaatacacaaatatattgtctaacgaagataacatactataatgtctaatataaaataaaattacaaccaaaaatagaaaatggagcactaat  4882500  Previous    Next  AGI:  At1g14290.1    Description:  acid phosphatase, putative. similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G69640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48398.1); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) Range:  from: 4880046    to: 4881959    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g14300.1    Description:  binding. similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96599.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Protein of unknown function DUF384 (InterPro:IPR007206); contains InterPro domain Protein of unknown function DUF383 (InterPro:IPR007205); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 4882371    to: 4884786    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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