Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 -------->P                                  --------->AHL20(2)                                            <---------At4g35610               --------->YAB1                              <---------ARR14(2)                             <---------ATHB12                              --------->ARR14(2)                             <<<<<<<<<ARR2 <---------ICU4                              --------->MYB52(1)                           --------->WOX13(1)      --                         --------->ZAT14    --------->At4g35610         <-----------GT1   <---------ATHB12                    <---------CCA1(2)       --------->ZAT2           --------->YAB1       <---------ATHB51             --------->HSFB2a(1)    <---------ALFIN1           ----------->RAV1(1)        <---------AHL20(2)             <---------HSFB2a(1) --------->ANAC46             --------->REM1(1)           --------->AHL20(2)   tgccatccccatggaacttcccatctctgaagtatcggccactctgagctacctccttgtaactacaacaaatataacaatcaaaacttcaaataatttc  4876800                                                                ------>NtERF2                                                             <---------ZAT2                                                             <---------At4g35610                                                             --------->ZAT2                                                      <-------TEIL                                                  ----------->GT1                                 <--           <----------DOF2     XXXXXXXXXXXXXXXXXXXX>MIR865-5P--------->At4g35610      --------->ARR14(2)   --------->ARR11(3)         <---------GLK1(2)   --------->ANAC58                  --------->LBD16 -------->DOF2   <-----------GT1                  --------->ANAC58                  ----------->GT1--   tcaaaggtctagtcttttttcacattccaatagaatttggattcaattgaacaagttacatagagctgcctcagaaaaattcagaccggaaactaaacaa  4876900                                                           --------->LBD16                                                          <---------HSFB2a(2)                                                          --------->HSFB2a(2)                                                      <----------DOF2                                                     <---------ANAC58                                                     <---------ANAC58                                                  --------->ARR14(2)             ------>ZmHOX2a(2)                                                  <---------ARR14(2)            <------ZmHOX2a(2)                                               --------->LBD16                  --------->GLK1(1)  <- -------GLK1(2)                             ------>ZmHOX2a(1)                  --------->ARR14(2) <-- ------->GLK1(2)                <---------DAG2<-----------RAV1(2)              <---------ARR14(2) ---   gaatctaatttagatagagtcagtgagacagtaacctttccctctcctccaggttcctttccagagttgaaaatgcaggccgatctccatttcttccgat  4877000               <---------RAP2.3(1)               ------>NtERF2               <---------ERF1               <---------DEAR3(2)               <---------MYB46(3)              <---------ATERF1(2)              <---------DEAR3(1)              <---------ANAC46            <---------ATERF1(1)           ------->GAMYB          --------->DEAR3(2)          <---------LBD16   ------>ZmHOX2a(1)         --------->MYB52(1) --------->LBD16        --------->MYB52(1) <---------LBD16        <-----------GT1 <---------ARR14(2)           <---------MYB52(1)      <---------MYB52(2)--------->ARR14(2)          <---------SPL7  --------->At5g28300  --------->GLK1(1)            --------->At5g28300 ----------->GT1<------NtERF2                     --------->RAP2.3(1) --------->TOE2(3)     <---------GLK1(1)        --------->DEAR3(1) ------->GAMYB--------->ATERF1(2)               ------->GAMYB --------->TOE1(3) --------->ANAC58            --------->MYB46(3) --------At5g28300 --------->ANAC58            --------->DEAR3(2) ---------GT1--------->ATERF1(1)               <---------MYB55(2)            <-----------GT1 ------>MYB52(1)--------->ATERF1(1) --------->MYB52(1)            <---------LBD16          ----------   taaccgtaaataaccggcggctagcaaatcctggagaaaaccggctcaaaccgccgtaagtacaagtcttcggaagaattaacctccttgaatcggataa  4877100                                                                                             --------                                                                                           --------->AtMYB61                               <---------GLK1(2)                          --------->ARR11(3) ------>MYB83                           --------->ANAC58                            --------->HSFB2a(2)--------->MYB46(3)                           --------->ANAC58                   <---------MYB52(1)         ------->TEIL                  <---------TOE2(3)                          <-------GAMYB<---------ARR11(3) ------>MYB46(1) ->GT1 --------->CCA1(2)   --------->ANAC46                 <-----------RAV1(1)   <---------ALFIN1   acatagaagagacgaagattgagataaacacgagattatctgagaaaccattttgaaattttctgttgttcttagagaacttccacacatgaaccaacac  4877200                          ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                         --------->CCA1(2)                         --------->ARR14(1)                        <---------ARR11(3)                        --------->AGP1                                   <---------TOE2(3)                        --------->ARR11(3)                              --------->MYB52(1)                        <---------ARR14(2)                           --------->YAB1                        --------->ARR14(2)                         --------->AHL20(2)                      ----------->ARR10                     <---------ANAC58                  ==============HOX2a_HOX2a                 <---------ANAC58                  ===============HOX2a_HOX2a ----------->GT1--------->ANAC55(2)            ====================HOX2a_HOX2a*TSS     ------------>MYB.PH3(1)            <------ZmHOX2a(1)             ----------->GT1   <---------ANAC55(2)            =====================HOX2a_HOX2a<--------P ----------->GT1  <-----------GT1          <---------TOE2(3)              <---------MYB46(3)--------->MYB52(2) >P--------->YAB1 <------ZmHOX2a(1)     <---------ANAC46 <---------MYB52(1)   gattatcagattgaggaagaggataagatccgactaaaacgagcgggtagaaaaaaaccgttacttacttaaaataacgttgtttaaggcccatttatgt  4877300                                                                                 <---------CCA1(2)                             ------->GAMYB                                     --------->TGA1a                            <---------MYB111(1)                                <---------TGA1a                            --------->MYB46(3)                                 --------->O2                            <------------MYB.PH3(2)                    <-------TEIL                            <---------MYB52(2)                         ------->TEIL                            <---------MYB111(2)                     <---------ANAC55(2)                            <---------MYB46(2)                      --------->ANAC55(2)                           ------>MYB83                            <---------------AtSPL3                      ------->GAMYB                                --------------->AtSPL3         ---------->DOF2   ------>MYB46(1)    <----------DOF2      <-------TEIL<---------O2 --------->ARR14(2)  --------->MYB46(3)       ===========================================bZIP_DOF --------->ZAT14   <---------DOF5.7(2)------>NtERF2                --------------->AtSPL8 <---------ARR14(2)--------->MYB52(1)--------->ANAC46              <---------------AtSPL8    --------   cagtataggcccaaagcccattaacgaccaactaactcgacgacaagtctttgtcagtatatcacaaaatacgtacatccctcgtgtcttctaatttgta  4877400                                                                           <---------AHL20(1)                                                                           --------->ARR11(3)                                                                           <---------AHL20(2)                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                      --------->ICU4                                                                      <---------YAB1                                                                   --------->AHL20(2)                                                                   <---------YAB1                 --------->YAB1   <----------DOF2                  <---------AHL20(2)                 <---------ICU4<-----------GT1                    --------->AHL20(2)      <---------ANAC58        <<<<<<<<<<GT-3b            --------->ANAC58  --------->AHL20(1)      <---------ANAC46--------->ZAT18           ------>ZmHOX2a(1) <---------AHL20(1)      <---------ANAC58<---------ZAT18 <-----------GT1    --------->ANAC58<---------TOE2(3) --->GT1       --------->GLK1(2)---------->ID1 --------->TOE2(3)  --------->AHL20(1)    --------->TOE2(3)   attttgttccttgggagaatcatgtccactatttttcttttttcattttccttataaccaagacaaaatataattaatattttgtttatacattagcaca  4877500                                           ----------->HVH21                                           --------->ANAC58                                           --------->ANAC46                                           --------->ANAC58                     <---------CCA1(2)                                         <---------ALFIN1                     <---------ICU4                                         --------->ANAC46                    ------>ZmHOX2a(1)                                       <---------ALFIN1                     --------->TOE2(3)                          --------------->AGL15                         <---------HSFB2a(1)                          <---------------AGL15                         --------->HSFB2a(1)                         <-----------------AGL1                        --------->HSFC1(2)                         ============================================================================                         ----------------->AGL3                        <---------HSFC1(2)                         <-----------------AGL3                        <---------HSFB2a(1)                         <-----------------AGL2                        --------->HSFB2a(1)                         ----------------->AGL1                       --------->ARR14(2)   --------->AHL20(2)                         ----------------->AGL2                    --------->ANAC58        <---------AHL20(2)          --------->ARR14(2)         --------->DEAR3(2)            --------->ANAC46      <-----------TBP          <---------ARR14(2)        --------->PCF2                 --------->ANAC58    --------------   aaatcactggcaaataggcagtcttgtcccagtaatggaacccacacgacatagcttcaaaaaaaaaacaaggaacttcctcatttcttctatttatatt  4877600                                                                                                    -                                                                                            <--------                                                                                         <----------DOF2                                                                                      ------->TEIL  <                                                                                      <---------ARR11(1)     --------->TOE2(3)   --------->YAB1                                               --------->ARR14(2)  <---------CCA1(2)      ----------->GT1 <----------ID1                               <---------ARR14(2) ==MADS_MADS          *TSS           ---------->DOF2    --------->TOE1(3)            <---------CCA1(2) ->AGL15  <---------ATHB12        --------->ANAC46      --------->TOE2(3)            <---------ARR14(1)   actcaaatctaaatcatccctaagaaatagtaatacacaaaaagaaacaaaatggtgaccttaacttcatcttcttcaactccaaacgtatcttttgatt  4877700  Previous    Next  AGI:  At1g14270.1    Description:  CAAX amino terminal protease family protein. similar to CAAX amino terminal protease family protein [Arabidopsis thaliana] (TAIR:AT5G60750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48394.1); contains InterPro domain Abortive infection protein (InterPro:IPR003675) Range:  from: 4874870    to: 4877243    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g14280.1    Description:  PKS2 (PHYTOCHROME KINASE SUBSTRATE 2). similar to PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) [Arabidopsis thaliana] (TAIR:AT2G02950.1); similar to Putative phytochrome kinase substrate 1, identical [Solanum demissum] (GB:AAT38757.1) Range:  from: 4877622    to: 4879144    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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