Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------AHL20(2)    --------->ATHB12                           <---------MYB46(3)       --------->AHL20(2)    <---------YAB1                              <------MYB46(1)      <---------YAB1         --------->ICU4                              <------MYB83           <----    --------->YAB1         --------->YAB1                             <-------GAMYB             -----    <--------HAHB4        <-------TEIL                       <-----------GT1                 <-------   <---------YAB1    --------->AHL20(2)                  --------->AHL20(1)               <---------- --------->GT1       --------->YAB1                      <---------AHL20(1)              <---------AHL20(2) ------ZAT14        <<<<<<<<<ARR2                        --------->ARR11(3)        <----------DOF2 ----->ZAT14   --------->ANAC46  <-------TEIL            <---------ARR11(3)<--------P    <-----------GT1   gcagtattattatatatacacaatcaaattcatgattcatcgatatactgatcactgaatattttacatgagcgttggtaagtcgctgtatttaactttc  4841400                                                                                        --------->At4g35610                                                                                        --------->LBD16                                                                                       ------->GAMYB                                                                                      --------->MYB46(3)                                                                                     <---------At5g28300                                                                                    --------->MYB52(1)                                                                                    <-----------GT1                                                                      --------------->AGL15                                                                      <---------HSFB2a(2)       --------->At4g35610                                            <---------------AGL15       <---------ZAT2                                                 --------->HSFB2a(2)       <---------At4g35610         <-----------RAV1(1)        ------>ZmHOX2a(1)   <---------MYB52(2) -----HSFB2a(2)        ----------->RAV1(1)            <---------ZAT18----------------->AGL1      <--- ---->HSFB2a(2)---------->DOF2<-------TEIL            --------->ZAT18----------------->AGL2      ---- ---DOF2 ----------->HVH21  <---------GLK1(2)      --------->ANAC58  ----------------->AGL3      ---- -GT1  --------->ZAT2  --------->MYB52(1)          --------->ANAC58  ----------------->AG        ----   agaagtacgagctgactcaaagagacaacagattcatgtgttgttcccatggcaagcgcgcttcctatagttccaaaaacagcaaataaccgcagaacga  4841500                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                                <---------ZAT2         <---------ARR14(2)                                            --------->HSFC1(2)         --------->ARR14(2)                                            <---------HSFC1(2)    --------->ARR14(2)                                         --------->ARR11(3)    <---------ARR14(2)        ------>MYB46(1)                  <---------ARR11(3)   --------->MYB46(3)         ------>MYB83               --------->HSFB2a(2)    --------->ZAT2 ------ARR14(2)             ------->GAMYB  --------->YAB1<---------HSFB2a(2)  <---------ALFIN1 ----->ARR14(2)          <-----------GT1 ---------->DOF2 ------>ZmHOX2a(1)   --------->LBD16 --->TEIL<---------MYB52(1)--------->MYB46(3)            ===============HOX2a_HOX2a             <---- ----->GLK1(2)  <----------DOF2 <----------DOF2 <---------ATHB12 ------>ZmHOX2a(2)              <----   atccaagaaccgatattcctttgtttataaccaactttggctcaaaagtaatcaatttcctagatgatcttgaagtttccccagcttcaatctgttttgc  4841600                                        <----------DOF2                                     <---------YAB1                                   <---------ICU4                               <-------TEIL                                                --------->ZAT14                            <---------At4g35610                                            <---------At4g35610                            --------->ZAT2                                                 <---------ZAT14                            --------->At4g35610                                        --------->ARR14(2)                            <---------ZAT2                                         --------->DAG2 -----ANAC58             ------>ZmHOX2a(1)  <---------ANAC58           --------->ZAT14 <---------ARR14(2) -----ANAC58            --------->TOE2(3)   <---------ANAC58    ----------->HVH21 ---------->DOF2----   ttccctagcttcaatcccttgtgcttcctcagcttcattatgctttgcttcttccatttttgctctgtgactgtttactaaacaaaaagggtctgcagtt  4841700                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                               <-----                                                                                               <-----                                                           --------->YAB1                     -------                                <---------MYB46(3)        <---------YAB1                      <------             --------->At5g28300----------->GT1          <---------AHL20(2)                 ---------         <---------ALFIN1      --------->ALFIN1        <---------YAB1                   ---------->DOF2 --------->AHL20(2)      --------->HSFB2a(2)      <---------At4g35610                --------->TOE2(3) <---------AHL20(2)      <---------HSFB2a(2)      --------->At4g35610               ----------->GT1 ----->AHL20(2)    <---------ALFIN1      <----------DOF2--------->YAB1          --------->AHL20(2)---   tatataaatctccacagtgaaacacttcaagaagtggttaagactttgaagtagctgattataatgaagaatacaagataaaaaaaatgttaaagcataa  4841800 -------AHL20(2) ------>AHL20(2) -------AHL20(1)                                                             --------->ARR11(3) ---HAHB4                                    *TSS                    <---------AHL20(2)           --- ----ICU4                             --------->ATHB12              --------->AHL20(2)        ------- -->ICU4                         <---------TOE1(3)                --------->ARR11(3)          <------ ---YAB1                         <---------TOE2(3)              --------->ICU4             <---------ANAC58 >YAB1  <---------GLK1(1)    --------->GLK1(2)        <---------AHL20(2)    <------------------------ANAC81 ------>AHL20(1)  ---------->DOF2--------->MYB59<------ZmHOX2a(1) <---------ARR11(3)       <---------ANAC58   ttaattgtggaattcacatataaagacagagaatttaggtttattgctgaggacatataatgagcaaagatttatttgttatcttgtgtttttgcttatc  4841900                                                 --------------->AGL15                                                 <---------YAB1                                                 <---------------AGL15                                                <-----------------AGL2                                                <-----------------AGL1                                    --------->MYB46(3)                                    ------------>CBF                                   --------->ANAC58                                   --------->ANAC58           ======================================================MADS_MADS           <---------------AGL15  ------->GAMYB <-----------------AG     ------->TEIL                <---------MYB55(2)                                     --------->GLK1(2) --------------->AtSPL8 --------->TOE2(3)    <---------GLK1(1)                      --------->YAB1 --->ZmHOX2a(1)        --------->REM1(1) --------->YAB1                            <---------AHL20(2) -->ARR14(2)      ----------->GT1<---------MYB111(2)                         --------->At4g35610 ---ARR14(2)    <------------CBF --------->MYB46(3)                       --------->LBD16   ctctctgtacctgctctatattgttacatcaaacaacaaccaataagaattctcattttggcattgtattcatgtccgtagctaaataataatctaagct  4842000                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                     <---------AHL20(2)                                                    --------->AHL20(1)                                                    <---------AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(2)                                                    --------->ARR11(3)                                                  ------->TEIL                                               <---------YAB1                                             --------->YAB1                                            --------->ICU4           ---------->DOF2                -   <----------DOF2                <---------AHL20(2)<---------ARR11(3)                        -------   ataaactttgaagtgtttactaaatttgactgtgattttttttagaatgatgaatatattttattcgtagagaaagagagaagaaattcaaaagattaaa  4842100                                 ------>NtERF2                             --------->ANAC58                             --------->ANAC58                  <---------ANAC58                        --------->ANAC46              <----------DOF2              <----------DOF2                        <---------TOE2(3)           ---------->ID1               <-------TEIL ------->P             ---------->DOF2     --------->YAB1      <---------ANAC58 --------->GLK1(2)<--- --->DOF2           <----------DOF2       <---------YAB1 --------->YAB1         <---------ARR14(2)   gctacccagattgaattcagtgctttaaggcacgacgacaacttatgatgttttgtctttcataggcgtttttgttcaagaggttctttttgaattgtcc  4842200                                                                                                 <---                                                                                                <----                                                          --------->SPL1(1)                  xxxxxxxx                                                         <---------SPL7               xxxxxxxxxxxxxxx                                                        <---------ANAC58             <----------DOF2                                                        <---------ANAC58            <----------DOF2<x                                                       --------------->AtSPL3       <---------DAG2xxx                                                       <-----------------------TaNAC69(2)    xxxxxxxx                                                 --------->ZAT2                    xxxxxxxxxxxxxxxxxx                               <----------DOF2   --------->At4g35610              ------>NtERF2 xxxxx                         --------->YAB1          <---------At4g35610   <---------CCA1(2)     xxxxxxxx                   <----------DOF2       <---------AHL20(2)--------->SPL7xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <---------ARR11(3)      --------->AHL20(2)<---------SPL1(1)<----------DOF2  xxxxxxxxx ------ALFIN1   --------->ARR11(3) <---------ANAC46    <---------------AtSPL3     ---------->ID1-----   cacatcgatagtttagaagagctttagtcatagctttgggtataaaatagaagctgagccgtacgaacaattcatacctttctcggccttttggctaaga  4842300  Previous    Next  AGI:  At1g14160.1    Description:  integral membrane family protein. Identical to UPF0497 membrane protein At1g14160 [Arabidopsis Thaliana] (GB:Q9XI72); similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G15290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15008.1); contains InterPro domain Conserved hypothetical protein CHP01569, trans-membrane plant (InterPro:IPR006459); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 4840694    to: 4841845    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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