Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->YAB1                              --------->MYB52(1)                                  <---------YAB1                            <---------MYB52(2)                                  <---------CCA1(2)   -                            --------->MYB46(3)                               <-------TEIL           <                       --------->ANAC46  <----------DOF2               --------->LBD16--------->MYB52(1)                       <---------ANAC55(2)                            --------->HSFB2a(2)  --------->ARR14(2)      <-------TEIL     --------->ANAC55(2)                            <---------HSFB2a(2)  <---------ARR14(2) ---------DOF2         --------->ANAC55(1)      <-------TEIL          <---------HSFC1(1)<------------MYB.PH3(1)   gctttaggtgcataagaacatcaacacataacaaacgaataagctttagattcacatataaaaactaaaattccagaaattcatatcataacggattcaa  4748500             <---------TOE2(3)            ---------->DOF2                       <---------YAB1  --------->LBD16                                <-----------GT1 --------->ANAC46            <---------------AtSPL8                               <---------ICU4 --------->HSFB2a(2)         --------------->AtSPL8                          --------->YAB1 -------->LBD16             <---------YAB1      --------->YAB1        --------->ANAC58 ---------LBD16         <----------DOF2        --------->ICU4         --------->ANAC58              <   tccccagaacaagttaaagtatcaaactttattagtacatacttccacaattatcaattccgacgaaaaatcaagctaataaaaacattaccagagaaaa  4748600                                       *TSS                                 ----------->GT1                           --------->ANAC58                                                       <--                           --------->ANAC58                                                      <---            <---------ETT(2)    --------->DAG2                                             <------MYB46(1)            --------->ETT(2)   ---------->DOF2                                   <---------AHL20(2) <      --------->ALFIN1   ---------->DOF2             <---------ARR14(2)      ----------->GT1  <------ ---------LBD16<-----------RAV1(2) ----------->GT1   --------->GLK1(2) ----------->ARR10   <------MYB83   attcgggagtgttgtcgacaggttgaagaaagcaaaagtgaaaatttgatttgggaatctagggcttatagattagaaccggtttaattcgcttggtccg  4748700                                                     <---------GLK1(1)                                                     --------->CCA1(2)                                                     <----------TaMYB80                                                     --------->GLK1(1)                                                    --------->ARR14(2)                                                    <---------ARR14(2)                                                    ---------->TaMYB80                                                  --------->LBD16                                                 <---------ANAC46                                                <---------LBD16                                           <-------TEIL                       <-------MYC3                                          --------->CCA1(2)                   ------->MYC2              ------------>CBF            --------->ARR14(1)                  <-------MYC2       <--- -------MYB52(1)                         <---------ARR14(2)                 <-------TEIL        ----- ------MYB52(1)                          --------->ARR14(2)           <---------ANAC58 <---------ARR14(2) ---------MYB46(3)                     ----------->ARR10              <---------ANAC58 --------->ARR14(2) ---LBD16  ------->TEIL  <---------LBD16 --------->ARR11(1)----------->RAV1(1)------->MYC3   --------   gtttgttcatatgaatatcaatttgtgtccggtttagaagatagatacgagccggatatgccaacacaagttgctaggcacgttgatggtatacggtgag  4748800                                            --------->At4g35610               --------->ANAC55(2)          <---------At4g35610                  --------->LBD16     <------MYB83                        <-------TEIL                          <---------LBD16     <------MYB46(1)                 <---------------AtSPL8                  <---------ARR14(2)     ----------->GT1                 <---------------AtSPL3           *TSS   --------->ARR14(2)    --------->MYB59                  --------->DAG2                   --------->LBD16 ---ZmHOX2a(1) --------->ANAC58     ---------->DOF2               <---------ARR14(2) ------>GT1    --------->ANAC58--------->AHL20(2)                 --------->ARR14(2)               <- ->ALFIN1      --------->ANAC46<---------AHL20(2)                <---------GLK1(1)         --------->GLK1(2)   gataatttggtaaattcaagtaattcaaagaatttaaataaagtacagctcattcgatgttgtctcggtatccgagttaaatccgggtttcaaaatcggg  4748900                                                            --------->AHL20(1)                                                            --------->AHL20(2)                                                            <---------AHL20(2)                                                            <---------AHL20(1)                      ------->TEIL                         --------->AHL20(2)  ------>MYB83                   --------->ANAC58                   --------->LBD16          ------>MYB46(1)                   --------->ANAC58                  --------->ANAC46        <---------MYB59               --------->ANAC58                 --------->KAN4(2)          ------>MYB83               --------->ANAC58                --------->HSFC1(2)          ------>MYB46(1)             ---------->DOF2                   <---------HSFC1(2)<---------AHL20(2)              <---   ----------------->AGL1                      --------->HSFB2a(1)   <-----------GT1             <---  <-----------------AGL1 <-----------GT1<----------DOF2<---------ALFIN1    -------->P            ---- ---------DOF2--------->DAG2   ------->GAMYB   <---------HSFB2a(1)  <-----------GT1              ----   tctttcccctaatcgaaaagcacgaattttcaaccctagccgctttcgaaaattcccccaattttatttttttcccctaccaaattttcttcgaatttca  4749000                                   ------>ZmHOX2a(2)                                  =============================HOX2a_HOX2a                                  <------ZmHOX2a(2)                                 <---------AGP1                                 --------->AGP1                                 --------->ARR11(3)                                 --------->ARR14(2)                                 <---------ARR14(2)     ------>ZmHOX2a(2)           <---------ARR11(3)    <------ZmHOX2a(2)           <---------CCA1(2)   --------->ARR14(2)      ====================================HOX2a_HOX2a   <---------ARR14(2)      ------>ZmHOX2a(2)   --------->ARR11(3)    --------->ARR11(3)   <---------ARR11(3)    <---------ARR11(3)                         ------>ZmHOX2a(2)  --------->At4g35610 <------ZmHOX2a(2)                     --------->ATHB12  <---------At4g35610<---------ARR14(2)           <<<<<<<<<TBF1   --------->ARR11(3)                < ------ZAT2          --------->ARR14(2)       <-----------GT1     <---------ARR11(3)                < ------At4g35610     --------->AGP1============================HOX2a_HOX2a                       <<<< ----->ZAT2       <---------HSFB2a(2)  ----------->GT1  ===================HOX2a_HOX2a       <------- ----->At4g35610  --------->HSFB2a(2)  --------->YAB1   ------>ZmHOX2a(1)      <-----------GT1-------   gctcagatcccttccttcttccagatcgatcttcagatctattgtaattttcttcttcctcttgatttgatcttccaattgatacctgttttgttatcat  4749100                                        ------>ZmHOX2a(2)                                       <---------At4g35610                                      <---------ARR14(2)                                      --------->ARR14(2)                                      <---------AGP1                                      <---------ARR11(3)                                  ------>ZmHOX2a(2)                                 --------->CCA1(2)     ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)    <------ZmHOX2a(2)                                --------->AGP1        --------->CCA1(2)                                --------->ARR14(2)   <---------ARR11(3)                                <---------ARR14(2)   <---------ARR14(2)           <---------WRKY38(1)  --------->ARR11(3)   --------->ARR14(2) ----------DOF2                 <---------ARR11(3)   --------->ARR11(3)                     --------- ---------MYB52(1)              <---------AGP1       <---------AGP1                    -------------- <<<<<NAM <<<<<<<<<<WRKY26     <---------CCA1(2)     <-----------ARR10             --------->GLK1(1) --YAB1   <<<<<<<<<<WRKY43    ----------->ARR10      --------->AGP1                <---------GLK1(1) -->YAB1  <<<<<<<<<<WRKY38 <-----------HVH21    ----------->RAV1(1)         <---------TOE2(3)       -   ccctttgttttggtcaaatctagggtttgagtcagatctggatctgataacaacagatctgatcaattgtttgtttttgatgttgatttccttcaaaagt  4749200                                                                                              -------                                                                                              <------                                                                                             <-------                                                              <------MYB83              <-----------HVH21                                               ------>ZmHOX2a(2)                    --------->AGP1                                         <-----------------AGL1                     <---------ARR14(2)                                        <-----------GT1       <------MYB46(1)       --------->ARR11(3)                                      <---------YAB1        <--------P              <---------ARR11(3)                                    <-----------GT1       <------MYB46(1)           <---------AGP1      <------ZmHOX2a(2)            --------->AHL20(2)     <---------MYB46(3)        --------->ARR14(2)     --------->ARR14(2)            <---------AHL20(2)     <------MYB83             <---------CCA1(2)     <---------ARR14(2)            --------->AHL20(1)    <---------TOE2(2)     <-----------HVH21 ------->TEIL                     --------->AHL20(2)     <---------TOE1(2)   <-------TEIL  --------->WOX13(1) ->DOF2------>ZmHOX2a(2)      <---------ALFIN1<------ZmHOX2a(2)        >>>>>>>ZML2----------->ARR10 ->AGL15  <---------MYB52(1) --------->LBD16 <---------ARR14(2)   --------->HSFB2a(1) ------>ZmHOX2a(2) -------->MYB52(1)          --------->ANAC46 --------->ARR14(2)   <---------HSFB2a(1)<------ZmHOX2a(2)   atgaacggatccgttcttaatttcagtttcccccaattttattatccgatctgggctcgtaggttgggatgttctagggttcgtcagatctgtcaattaa  4749300                                                                         <---------MYB52(1)                            <-----------GT1                             --------->LBD16                            --------->MYB52(1)                         <---------ANAC55(2)                        <---------ICU4                                 <---------ANAC58                       --------->ICU4                                  <---------ANAC46     <----------DOF2   <---------YAB1       <-----------GT1            <---------ANAC58      <------- -->AHL20(2)         --------->YAB1   <---------WOX13(1)          <---------AHL20(2)         <------- ---AHL20(2)        <---------YAB1  --------->ATHB12  --------->ATHB12 ----------->GT1  <---------ZAT6 --ATHB12         --------->YAB1   <-------TEIL <---------GLK1(2)--------->AHL20(2)    <---------TOE1(3)   tcgagggcttttgtctgtattcatgataattaaccgattcattgattttcgattcttgatttcgcgatttaatccgtgaattgaaatctagggttagggt  4749400  Previous    Next  AGI:  At1g13870.1    Description:  DRL1 (DEFORMED ROOTS AND LEAVES 1). similar to unnamed protein product [Vitis vinifera] (GB:CAO41894.1); contains InterPro domain Chromatin associated protein KTI12 (InterPro:IPR013641) Range:  from: 4747262    to: 4748639    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g13880.1    Description:  ELM2 domain-containing protein. similar to myb family transcription factor / ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03470.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41886.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain ELM2 (InterPro:IPR000949) Range:  from: 4748870    to: 4751209    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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