Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ----------->HVH21 <---------ANAC58 <---------ANAC58                         <---------ARR14(2) ----YAB1                      <XXXXXXXXXXXXXXXXXXXXMIR864-5P                                <------- -->ARR11(3)          <---------ICU4      --------->ARR14(2)                   --------->ARR11(3) ---ARR11(3)     --------->AHL20(2)      <---------CCA1(2)                  <-----------GT1  --------   atttcttgtttgacagaaaaaaaatcattttttgatgtgagtcatatctgtatgagcaaaatcaaacagttttgaaatttacatcttgttgagtcacata  4741600                                                           ----------->GT1                                                           <---------ZAT6                                                      --------->YAB1                          -------                                                     <---------YAB1                           =======                                                    <---------AHL20(2)                        -------                                                    --------->AHL20(2)                        -------                                                    --------->AHL20(1)                        -------                                                    <---------AHL20(1)                      ---------                                                 --------->AHL20(2)                      --------->ZAT14                                                 --------->YAB1                          --------->ZAT18                                                 <---------AHL20(2)                 <---------ANAC58                         <---------YAB1       --------->YAB1                        <---------ANAC58                  <---------ANAC55(2)        --------->AHL20(2)                <---------ANAC58         <---------GLK1(1)                   <---------AHL20(2)           <---------------AtSPL8         --------->CCA1(2)                  --------->AHL20(1)           --------->DAG2  <---------ZAT14        <---------ARR14(2)                  --------->AHL20(2)         ---------->DOF2   <---------ZAT18        --------->ARR14(2)                  <---------AHL20(2)         ============================== --ANAC55(2)      --------->ANAC55(2)  --------------->AGL15    <---------YAB1 ---------------------- ->ANAC55(2)  <-----------HVH21        <---------------AGL15 <---------MYB52(1)<---------ANAC58   ---   ttagaaattggatatgagtcacatattttgatgaaacgtttctaaatttaataatataatactgttattttagaaaagggtacttgtcttgtgcacacga  4741700     --------->At5g28300    ----------->GT1 -->ANAC58 ==========================MYC_MYB -->ANAC46 -->TGA1a -->ANAC58 >ANAC46 ===bZIP_DOF                                                       <---------AHL20(2) ->TaNAC69(2)       <--------P                                     --------->AHL20(2) -------->HVH21    <-------GAMYB   <---------YAB1      <----------DOF2<---------TOE2(3)             -   ctgaaacggtaatagttttggggttgaacacaaaattttgtttgctaatggtttgaactttgaacttaatttaagaatggttttgactagtaagtgccta  4741800                   <---------ICU4                   <---------AHL20(2)               --------->AHL20(1)               <---------AHL20(1)               <---------AHL20(2)                              <---------ICU4           --------->AHL20(2)                               --------->YAB1           <---------AHL20(2)                              <---------YAB1                           <          --------->AHL20(2) <---------YAB1               <-----------GT1                        ----     <----------DOF2        <---------AHL20(1)       <----------DOF2                             ---- --------->DOF2--------->AHL20(2)   <---------YAB1   <---------DAG2                            ------   agtaaagctttatttaattaattaatgcattattttttatgaataccattacacactttttatcatcatctcatatatatgagtcatacatttactaaaa  4741900                                                                                                  xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 <---                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                *TSS-                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                         <---------WRKY38(1)                                    xxxxx                                         <---------WRKY12                                       xxxxx                                       <---------PCF2                                           xxxxx                                     --------->ZAT18                                            xxxxx      <-----------GT1               --------->ATERF1(1)                                         xxxxx ---------YAB1                    <---------ANAC46               ----------->GT1                xxxxx ----->TOE2(2)     ------------>CBF --------->ALFIN1     ----------->GT1                        xxxxx ----->TOE1(2)  ---------->DOF2   <---------ANAC58    --------->YAB1                           xxxxxx --->ZAT6<----------DOF2          <---------ANAC58   <---------YAB1    <-----------GT1<---------At4g35610   ctacgatttttctttcccaaatgcaatttgtgtttggagtgggccaacgcttgctataatagttatatgtttaatacagttcaaattcagcaaatgggga  4742000               <---------ZAT18            xxxxxxxxxxxxxxxx>smallRNA(se3) --------->At4g35610 <---------At4g35610   <----------DOF2 xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxx>smallRNA(fl3) ------REM1(1) --------->ZAT18 xxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxx>smallRNA(fl3)                                  --------->At4g35610 xxxxxxxxxxxxxx>smallRNA(le3)                              --------->GLK1(1) xxxxxxxxxxx>smallRNA(le3)                                ------->TEIL xxxxxxxxxxxxxxxx>smallRNA(fl3)                          <---------ALFIN1 xxxxxxxxxxxxxx>smallRNA(se3)                           --------->LBD16 xxxxxxxxxxxxxxx>smallRNA(se3)                         --------->ANAC58 xxxxxxxxxxxxxxx>smallRNA(si3)                         --------->ANAC58 xxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------ALFIN1 xxxxxxxxxxxxxx>smallRNA(si3)                          --------->ANAC46 xxxxxxxxxx>smallRNA(si3)                ------->PIF5 --------->ANAC46 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <-------PIF5 <---------LBD16 xxxxxxxxxxxxxxxx>smallRNA(se3)        <---------LBD16--------->LBD16 xxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>TEIL---------->DOF2           xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      ---------->DOF2 xxxxxxxxxxx>smallRNA(i)   <---------ANAC58       <------ZmHOX2a(2)                <---------YAB1 xxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s)              <----------DOF2<---------TOE1(3) xxxxxxxxxx>smallRNA(fl3)  <---------ANAC58      --------->ARR14(2)        <---------DAG2 <---------TOE2(3)   tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccaattttgaaactttttttttgattaaaggtttt  4742100                 --------->ARR14(2)                 <---------ARR14(2)              --------->LBD16             --------->ANAC46             ======================RAV    --------->TGA1a             <-----------RAV1(2)          --------->ANAC55(2)              --------->ATHB12          --------->ANAC58                <---------O2                    --------->ICU4          --------->ANAC46      ====================bZIP_DOF              <------ZmHOX2a(2)          --------->ANAC58      <----------DOF2                           <---------YAB1          <--        <---------ALFIN1    <---------ANAC46                             <---------ARR11(3)       ---       --------->ZAT14   <---------MYB52(1)    ----------->HVH21  <-------MYC3           <---------At4g35610       --------->ZAT18  <-------GAMYB--------->ARR14(2)           ------->MYC3           --------->At4g35610       <---------ZAT14  ============================MYC_MYB       ------->MYC2  <------MYB46(1)  <---       <---------ZAT18 =============================bZIP_DOF      <-------MYC2  <------MYB83     <---    <---------At4g35610<----------DOF2  <-----------GT1      --------->AtLEC2  --------->MYB59<------    --------->At4g35610<-----------RAV1(1)--------->O2   ------>NtERF2   --------->ARR11(3) <--------   tcagacatctgcactccaggtttcgctgttgtgtctttggattcacgtcttgacattgcctccatgcatatgcgagatcattaggttttgcagatgtcac  4742200                                                                                              <------                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                                                   <------NtERF2                                                                                 <---------ANAC58 -------ZAT14                                                                    <---------ANAC46 ------>ZAT14                                                                    <---------ANAC58 -------DOF2   --------->ZAT14                  --------->At4g35610           <-----------RAV1(1) ------DAG2    <---------ZAT18             <---------YAB1                   --------->At4g35610 -----GT1      <---------ZAT14        <----------DOF2             ------>ZmHOX2a(1)------>NtERF2 ---HVH21      --------->ZAT18  ---------->DOF2 <---------At4g35610         <---------At4g35610------   tttactcaatgtttttgtgcagttttcttcgacttaaagactttttttatagctcccatttctatttcctatgtaggcttctggcggacattaattaggg  4742300                                    --------->YAB1                                ------>ZmHOX2a(1)                    ---------->DOF2            -----                          --------->ICU4                            --------->AHL20(2)          <----                        --------->YAB1                  <---------TOE2(3)                       <---- ---TOE2(3)          --------->ANAC46  ---------->DOF2  --------->MYB59                         ----- ----->GT1    <----------DOF2 --------->YAB1            <---------TOE1(3)          --------->YAB1 ---   tataacataaccaagtcttttctaagtcataatcctaataataaagcatatcaagttttaggttaacaaattaaagcattggaaaacataaccagttgag  4742400                        <----------DOF2                       <---------ANAC58              <---------ANAC46            <---------MYB46(3) --------->ARR14(2)           <---------DEAR3(1)  <---------ARR14(2)                          <---------ARR14(2)      <-       <-----------RAV1(2)  <---------ANAC58                       <---------ARR14(2)          <----- ---->ZAT2 --------->ALFIN1 <---------ANAC58                       --------->ARR14(2)          <----- -----At4g35610        <---------ANAC58                <----------DOF2----------->GT1          ------ -----ZAT2 <---------AtMYB61<---------ANAC46    <---------ANAC58  <------ZmHOX2a(1)            ------ ---->At4g35610  --------->ARR14(2)        ---------->DOF2   --------->ALFIN1              ------>ZmHOX2a(2) -------->HVH21  <---------ARR14(2)<<<<<<<<<TBF1<---------ANAC58  ================================HOX2a_HOX2a   ctgacatatacaggtggtggatttggctttgcgtttcttcttccctaaagacttgcgcttgtagtggaggaatcgcaaatttgaactacttgatcggagc  4742500  Previous    Next  AGI:  At1g13840.1    Description:  pre-tRNA. tRNA-Ala (anticodon: TGC) Range:  from: 4741996    to: 4742068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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