Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------GLK1(2)         --------->ALFIN1                         <---------YAB1            <---------ANAC46                  --------->YAB1                 --------->ZAT14            <-----------HVH21               --------->MYB46(3)            --------->TOE2(3)  <---------YAB1    <---------ZAT14              <---------ATHB12          <-------TEIL   --------->ICU4<----------DOF2--------->ZAT14--------->MYB46(3)      >>>>>>>>   aatatcaatagcttcgtcaaacatatcaagattagcataggctttaaccaatgcagtggagactcgaatcaacaacaccaatgactgttccatttctcca  4733300                                                                                                   <-                                                                                                 ----                                                                                               ------                                                                                               ------                                                                                               ------                               <-----------HVH21                                <---------ANAC58 ----                         --------->ARR14(2) ------>ZmHOX2a(1)                   <---------ANAC58<----   <----------DOF2--------->ZAT14      <---------At4g35610                    <---------ARR11(3)----- >>>>>>>>>LFY     <---------ZAT14--------->SPL7                   ---------->DOF2       <---------ALFIN1   atggcctttaacaaatccattacactgaaaccgcgtccctcatctcctcttctaacgagttcaaatagaaaagtatccaatttcttatccaaaccccaac  4733400                                                                                           <---------ARR11(3)      --------->GLK1(2)                                                                    --------->ARR11(3) --------MYB52(2)                                                                         <------ZmHOX2a(1) --->GAMYB                                                                                --------->YAB1 >MYB46(1)--------->YAB1                                                                <---------TOE2(3) >MYB83  <---------YAB1                                                               --------->CCA1(2) -->P<---------GLK1(2)                                                         --------->ANAC58 ----->TOE2(3)                                <-----------GT1                  --------->ANAC58     - -----MYB55(2)                   --------->ZAT6   --------->GLK1(1)           --------->DAG2     <--- ---->MYB46(3)   --------->At4g35610     ---------->DOF2                     ---------->DOF2<------ZmHOX2a(2)   cacaaacgattctgataacagttgcataagcttggacactaggcaaagtcacatttccttcaattcgtttgagaaacgataaagcaagataaggatcatc  4733500                     --------->ARR14(2)                     <---------ARR14(2)                --------->ANAC58                          ---------->DOF2                --------->ANAC58                        --------->YAB1    <---------ANAC58             ------->GAMYB                           --------->YAB1       <---------ANAC58       <--- -------->YAB1  --------->ANAC46                <----------DOF2------->TEIL                      <--- -------DOF2<---------ALFIN1         <-----------GT1<---------YAB1   <----------DOF2 --------->ALFIN1   tttcatactattcaacacacgaagaaccccaatgtcatttaactccaatgctttataatcaaaagtaccttcttttacttgctcagagtgtgagattgta  4733600                    --------->ARR14(2)                   <------ZmHOX2a(1)               <---------ZAT14               --------->ZAT18                                       --------->TGA1a             ------->PIF5                                            <---------TGA1a             ----             <-------PIF5   ----------->ARR10 <---------ANAC58     <---------TGA1a              -----       --------->LBD16   --------->ANAC46     <---------ANAC58     --------->TGA1a              -----      <---------LBD16 --------->MYB46(3)   <---------PCF2--------->WOX13(1)                     -----     <---------LBD16<---------ARR14(2)     <---------ARR14(2) ------>ZmHOX2a(1)                <----- ------TOE2(3) --------->ZAT14    <---------HSFB2a(2)  <---------ATHB12                ----------->GT1 ------TOE1(3)--------->ALFIN1<---------GLK1(2)------>ZmHOX2a(1)----------->HVH21     ----------->GT1   aggtttgtccgggcaagtgcaggaaccacgtagaatcgcgaagagggtccttgtcgaatcaatcctctcacatgtgagagtaatggaatcggaaaaaccc  4733700                             <------NtERF2                            ----------->GT1                            --------->LBD16                           --------->RAP2.6(2)                       --------->ATERF1(1)                       <-----------RAV1(2)                  =================RAV                  <-----------RAV1(1)                ------>ZmHOX2a(2)         <-----------GT1  <---------LBD16      --------->AHL20(1) <---------At4g35610      <---------ARR11(3) <---------ZAT2      --------->ARR11(3) <------NtERF2                              <-----------GT1      <---------AHL20(1) --------->At4g35610                     <---------GLK1(2)           <-------TEIL ----->LBD16   <------ZmHOX2a(2)                                 --------->ARR11(3)         --------- ---->ANAC58  <---------ARR14(2)                                 <---------ARR11(3)         --------- ---->ANAC46  --------->ARR11(3)                                <---------RVE1(1)          <---------ARR14(2) ---->ANAC58  --------->ARR14(2)                      <------------CBF <---------ETT(1)    --------->ARR14(2) ----LBD16<-----------GT1--------->ZAT2    --------->MYB52(1)  ----------->ARR10  <---------ZAT14   gcatgaaatattttccgatcttgtggcagccggaaaaaaaaaaactagcagagactaattgagaagagattttccgaccaagagagaactgaagattcag  4733800                                                                                                -----                                                                                            <--------                                                                                            ------->TEIL                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                           <---------ARR14(1)                                                                                       XXXXXXXXXXXXXX                                                                                --------->AHL20(1)                                                                                --------->AHL20(2)     <---------------AGL15                                                      <---------AHL20(2)     --------------->AGL15                                                     <---------AHL20(2)     <----------DOF2                                                       <---------YAB1<---------MYB59  <-----------GT1                                                        ----------->GT1--------->ANAC46 >CCA1(2)                            ------------>CBF               <-----------GT1   <-----------GT1 >GLK1(2)        <------ZmHOX2a(1)   --------->MYB46(3)      ----------->GT1   --------->AHL20(2)  --   ggttttactttacagagaaggacatagaaatcgacccgaaccaattccaaattagaactcgaaccgaaaataacattgtaattaaattataccgaatcta  4733900                                                  --------->At5g28300                                                 ----------->GT1                                    -                                                 --------->RAP2.6(2)                                <                                             --------->ANAC58                                    <--- ---->MYB52(1)                               --------->ANAC58                                    ---- -ARR14(2)                                  --------->SPL7                          <---------YAB1 <- >ARR14(2)                                <---------SPL7              --------->ANAC46       <------- >GLK1(2)                               <---------------AtSPL3       --------->RAP2.6(3)     <------- ---ARR10               ----------->GT1 <---------------AtSPL8     --------->ARR14(2)   <----------DOF2 -ARR11(1)           ------->GAMYB  --------->AHL20(2)             <---------ARR14(2)   <---------DAG2 XXXXXX>MIR862-3P --------->MYB52(1)<---------AHL20(2)   --------->ATHB12         <---------ICU4<---- ----->GAMYB  --------->LBD16  --------->ICU4<---------RAP2.6(2)------------>CBF <---------MYB52(1)--   accgaaatattcgaaccggataacggaagtaaaatgattttaatggtacggccgtaaaatgtttgggccaatacggcccattcgttatgactttttttat  4734000                                                                               <---------ARR14(2)                                                                           ------>NtERF2                                                                         <------NtERF2                                                                         --------->ATERF1(1)                                                                        ------>NtERF2                                                                        <---------ATERF1(1)                                                                        <-----------HVH21                                                                       <---------ATERF1(2)                                                                       <---------bZIP60(1)                                                                       --------->bZIP60(1)                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                       <---------bZIP60(2)                                                                       <---------O2         --------->GLK1(2)                                             --------->DEAR3(1)   <-----------GT1                                                     --------->ATERF1(2)  <---------YAB1                                                       <---------ANAC58 -------->YAB1                                                    --------->ALFIN1 ---------ICU4                                                   <---------MYB52(1) ------ICU4                                                     <---------DEAR3(2) ----->YAB1                                                    <---------DEAR3(1)         <---------ANAC58 --------YAB1                    *TSS    --------->GLK1(2)   --------->LBD16   <---------MYB52(1) --AHL20(2)                   ---------->DOF2                ------>NtERF2<---------DEAR3(1) --YAB1 <---------GLK1(2) --------->TOE2(3)                 --------->ANAC46<------NtERF2 <---------ANAC58 -----YAB1                --------->TOE1(3)                 --------->DEAR3(1) --------->ARR14(2) ------->ICU4         <-----------GT1   <---------GLK1(2)  <---------LBD16--------->DEAR3(1)    <----   tattattacagaatcgtttccattaaacccttaaaagtttcagaatcgaactcgtctattctccgccggtgtgccgtcgccgatatgcttcgtcgtgtct  4734100                    <------MYB46(1)                    <------MYB83                   <---------AtMYB61                   <---------MYB46(3)                  <---------MYB52(1)                 <---------At4g35610                 <-------GAMYB                <---------MYB46(3)                --------->MYB52(2)              <---------MYB52(1)             ------------>AtMYB77                             <---------MYB52(1)        --------->ZAT18                             --------->YAB1             <---------ARR14(2)        <---------ZAT14                            <---------YAB1     --------->MYB52(1)        --------->ZAT14                    ----------->GT1--------->ARR14(1)   --------->ARR14(2)     <---------ANAC58                      <---------ANAC46  --------->TOE2(3)------>MYB83     <---------ANAC46                   <-----------RAV1(1)<-------TEIL <---------ETT(2)     <---------ANAC58                  <---------TOE2(3) --------->ARR11(1)   ------>MYB46(1)      -- ------DOF2  <-----------HVH21       <---------AHL20(2)  <---------GLK1(2)  <---------MYB59   -------   tttacaagcgtgcacggtcagttggtgtctctgtctgattttatgttgtatatatcatagattcgttagaactatcgaccaaatacacattcaattttgt  4734200  Previous    Next  AGI:  At1g13800.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G26790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48949.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4731053    to: 4733704    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g13810.1    Description:  DNA binding / magnesium ion binding / nuclease. similar to DNA binding / magnesium ion binding / nuclease [Arabidopsis thaliana] (TAIR:AT1G67660.2); similar to DNA binding / magnesium ion binding / nuclease [Arabidopsis thaliana] (TAIR:AT1G67660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62306.1); contains InterPro domain Exonuclease, phage-type; (InterPro:IPR011609); contains InterPro domain Restriction endonuclease, type II-like, core; (InterPro:IPR011335); contains InterPro domain Exonuclease, phage-type/RecB, C-terminal; (InterPro:IPR011604) Range:  from: 4734033    to: 4735386    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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