Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <-----------GT1                        <-----------GT1                     --------->ARR11(3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------GLK1(2)            xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->AtMYB61           <----------DOF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------CCA1(2)          <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxx>smallRNA(si3)        <--------       <--------P   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxx    <---------TOE2(3)<---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <------ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx -------->HVH21    ----------->ARR10   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx --->ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR11(3)   ctgacaaaggttgctttcgatgagattttccctcttgaattgacacaagagtcaccaaaacatcaacaagtttcccatttctcacaagaagatcatgaaa  4721300                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                            <------MYB46(1)                                                                            <------MYB83                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <---------HSFC1(1)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        --------->HSFB2a(2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        --------->HSFC1(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <---------HSFB2a(2)            --------->DAG2                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ---------->DOF2          ------                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     ------->TEIL       >>>>>>>ZML2                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->YAB1     xxxxxxxxxxxxxxx          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------YAB1 < xxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->TOE2(3)<---------WOX13(1)<x xx>smallRNA(si3) <---------YAB1       *TSS<---------ZAT6    ----------->RAV1(1)xxxxxxxxxxxxxxxxxxxxx x>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   acaaatgtctgaagatgaagatgaatgtgatacaactgtgttctagagataacttgtaggaaacaacatttataaagttggtgactgatgatcaaaacct  4721400                                  --------->ATHB12                                  <---------ICU4                                  <--------HAHB4                                 <---------YAB1                                 --------->ICU4                         --------->ARR14(1)                         --------->CCA1(2)                        <---------ARR11(3)                        --------->ARR11(3)                                   <<<<<<<<<<MYB80                        --------->ARR14(2)                                  <---------MYB46(3)                        <---------ARR14(2)                                  <------MYB83                        --------->ARR11(1)                                <--------P                    ---------->DOF2                                   <---------ANAC46                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------ANAC58           ---------->DOF2     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----------->HVH21           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->LBD16                   -          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------ANAC55(2)                <         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------ANAC58               <----      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------YAB1      <---------ANAC58         ----------- x>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ANAC55(2)      <---------- --->TOE1(2)      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ALFIN1 <------MYB46(1)     ----- xxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ANAC55(1)     <----------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------TOE2(3)   <---------ANAC46        ------------ xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1<-----------HVH21<---------ANAC58   ------------ >smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2<---------MYB52(1)    <-----------   agaaacataggcacaaagcatataaagatatggtgatcattagcattaacattcctttcacacacttccgtgacttgttggtttaagtgtttctaaatct  4721500                                                <---------ANAC58                                                <---------ANAC46                                            <---------At4g35610                                            <---------ANAC58                                            --------->At4g35610                                         ----------->HVH21                                        <-----------HVH21                                       <---------O2                        -------->P                                       =============================================MYC_MYB                                       =======================================bZIP_DOF -------->GLK1(1)                      <---------ANAC55(2)            <-----------GT1 ---------GLK1(1)                      --------->ANAC55(2)         <----------DOF2 -----HSFB2a(2)                        --------->O2                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->AGL15                    <---------ANAC46 <---------ANAC58  <---------DAG2 -----AGL15                    <---------bZIP60(2)              ------->TEIL                        - ---->HSFB2a(2)             <---------YAB1  <---------ANAC58--------------->AtSPL8          xxxxxxxxx ------AGL3              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------------AtSPL8       --------->YAB1 ----->AGL2      ---------->DOF2       --------->TGA1a      --------------->AtSPL3      <---------ATHB12 ----->AGL3      ================================bZIP_DOF   <---------------AtSPL3    --------->WOX13(1) ------AGL2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ----------------->AGL1   ---------->DOF2    <--   agaaatccaattgggagccaaaagaagactatgatgtggacatgtgacctgcgtttgccaaaaacgtaccttttactaacccaaagtccaatcacatttg  4721600                              ------>MYB83                             --------->ANAC46              <------------CBF----------->RAV1(1)            <---------AHL20(2)------>MYB46(1)           ------------>CBF--------->ANAC58 <------------CBF     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       ----- -------->ATHB12    <------------CBF                  --------->DAG2                     --------->YAB1 xxxxxxxxxxx>smallRNA(si3) --------->ANAC58          ---------->DOF2     <---------ANAC55(2)    ----- ---------HVH21  ------------>CBF  ---------->DOF2--------->YAB1         --------->ANAC55(2)*TSS<----   ggtcattggactattcaattgcaattgaaacccaacacaaagtccaaaacactcataaagtctaaacatttgaataagtgattcttttcactcgtaagaa  4721700                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       <---------ARR14(2)                                       --------->ARR14(2)                                     --------->LBD16                                    <---------ANAC58                                    <---------ANAC58                                                <      --------->ANAC46              <---------ANAC55(2)                                            --   <---------ARR14(2)               <---------ANAC46                                               --   --------->ARR14(2)              <---------LBD16                                                 -- ---->ANAC58                     <---------WOX13(1)                                               --- ---->ANAC58                   --------->ATHB12                            --------->ZAT6        ---- ------ID1                    <---------YAB1   <---------YAB1         <<<<<<<<<TBF1           -------   gccaaaattcgccatgagagaagaacaagtctctgattgcggatcgattactcttgaagaatggaatggttcttcttccactaagctattcaaaacagca  4721800 -----------HVH21 ----->GAMYB------>ZmHOX2a(1)                    <----------DOF2    <---------YAB1 >>>>>>>>>GATA-1 ------->YAB1                              <-----------GT1       --------->GLK1(2) >>>>>>>>>GATA-3 ------->AtMYB61                       <----------DOF2           --------->ARR14(2)>>>>>>>>>GATA-4 ------>MYB46(3)                  <-------TEIL ------>ZmHOX2a(1) <---------ARR14(2)>>>>>>>>>GATA-2 ---->P  ------>NtERF2           --------->ARR14(2)       --------->WOX13(1)       <---------ARR14(2) -->At4g35610                  --------->HSFB2a(1)      <---------ATHB12           --------->ARR14(2)   accatcactgcctcctcttctctctctatccaaaggttcttctttattcctctttgaaatcaatccaaatctgatagtttcagtggattcacaacaaaat  4721900                                                                   --------->REM1(2)                                                            --------->YAB1                  <---------ANAC58                          <---------ICU4                  <---------ANAC58                         <---------ATHB12           <---------TOE1(2)        --------->ATHB12     --------->YAB1     <---------ARR11(3)        <---------ANAC58           <-------TEIL       <----------DOF2       --------->ARR11(3)        <---------ANAC58 ------>ZmHOX2a(1)   --------->At4g35610  --------->ALFIN1 --------->ANAC58     <----------DOF2   ----------->RAV1(2)   <---------At4g35610--------->ALFIN1   --------->ANAC58   tgagaaactttcttgggttttcgtctcctgtgagtgattcataggtctgctaatcgctttaatcatgtgtggagacgagttcttcaagcatttgtaccag  4722000                                                                                       ------>ZmHOX2a(1)                                                                                      <---------LBD16                             <---------ARR14(2)                                      ----------->RAV1(2)                             --------->ARR14(2)                                   <----------DOF2                             <-----------ARR10   --------->ALFIN1                 --------->GLK1(1)                             --------->GLK1(2)<---------TOE1(3)            <---------ZAT14                       <----------DOF2  --------->LBD16                    --------->ZAT18                   ---------->ID1     <---------LBD16                      --------->ZAT14   <-------               <----------DOF2       ------>ZmHOX2a(1)     --------------->AtSPL8<---------ANAC58          <-----------GT1   <---------GLK1(2) <---------TOE2(3)  <----------DOF2 <---------ANAC58   aggcaagtgttttctctctttttccctttagaatctgtcctccggattagggtttggctgaattgtactttgtctagtgcagggctttcctggcagtgta  4722100                                                               <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                    <---------YAB1                                                 --------->ARR14(2)                                                 --------->GLK1(2)    <---------GLK1(2)                            ---------->TaMYB80       <---------ZAT6  --------->LBD16         ----------->HVH21      <---------ARR14(2)       ----------->GT1 --ZAT6              <---------MYB52(1)          <---------KAN4(2)---------->DOF2   actccagattatgtagggtttcagttatgggacacattacaggtatgtgagaatatgcttgtatgccttatagctactgtgaaatttgaattgtgactct  4722200  Previous    Next  AGI:  At1g13760.1    Description:  unknown protein Range:  from: 4720240    to: 4721339    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g13770.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41865.1); contains InterPro domain Protein of unknown function DUF647 (InterPro:IPR006968) Range:  from: 4721692    to: 4724507    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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