Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->DAG2          --------->TOE2(3)   <---------AHL20(2)                                              -------          --------->TOE1(3)   <---------AHL20(1)                                             <-------        <-----------ARR10     --------->AHL20(1)                                             -------- -------->At4g35610   ---------->DOF2                                                    <---------AHL20(2) ------->ARR11(3)  --------->YAB1<---------AHL20(2)                               <----------ID1<---- ------GT1--------->YAB1      --------->AHL20(2)                 --------->AHL20(2)      --------->AHL20(2)   acatctggctaatcttagcatgcataaagcattatatttttgggcttagtttaactcaagttttttttaaaataggctccaaatggaacaaaaaattaaa  4692900                                                                                                 <---                                                 <---------AHL20(1)                  <---------MYB52(1)                                                 --------->ARR11(3)               ------>ZmHOX2a(2)                                                 <---------ARR11(3)          <--------P        <----- --->DOF2           ------>MYB46(1)              --------->AHL20(1)          <---------WOX13(1)<----- --AHL20(2)         ------>MYB83  --------->HSFB2a(2)<---------YAB1         <-------GAMYB      <----- ->AHL20(2)       --------->TOE1(2)  <---------GLK1(1)                     <------MYB46(1)<---------ICU4 -----TOE2(3)     --------->TOE2(2)  --------->GLK1(1)<-----------GT1      <------MYB83  <---------YAB1   ggaaactaaacatttagatacctacgaagtaaacttctgaaatctgaacaatattttgactgttttttttgtctatttggttgatccgttgattatggcg  4693000                                                                                                    <                                                                                                   --                                                                                                  ---           <---------ANAC58                                                                     <----           <---------ANAC55(1)                                                                  <----       -------->HAHB4                                                                     --------->ARR11(3)       --------->YAB1                  --------->MYB55(2)                   --------->ANAC58    <----      <---------YAB1      --------->YAB1 <--------P                         --------->ANAC58    <----    --------->YAB1  ------->TEIL       <---------MYB46(3)       ----------->GT1      --------->AHL20(2) ----GAMYB <---------ANAC58           <---------AtMYB61        <---------YAB1        <---------AHL20(2) ----ANAC58<---------ANAC55(2)        --------->ALFIN1   <---------AHL20(2) ----------->GT1--------->CCA1(2) ----ANAC46--------->ANAC55(2)  --------->ARR14(2)       --------->AHL20(2)--------->DAG2 --------->AHL20(1) ----ANAC58<---------ANAC46     <---------ARR14(2)   --------->AHL20(2)   ---------->DOF2--------->AHL20(2)   tttgaataataatacgtgaatgtatcaattgtcatattcggtggtagtttagcaaaaaaataaatatgcttaaaaaaaaagcaaaaaataaatatatggg  4693100                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 ----         <---------AHL20(2)                                                                      ----         --------->AHL20(2)                                                                      <---         --------->AHL20(1)                                                                     -----        --------->AHL20(2)      <----------DOF2               <------ZmHOX2a(1)           <---------- ------NtERF2                  <---------ANAC58              ----------->GT1             --------->ATHB12 --------->GT1                 <---------ANAC46             <---------TOE2(3)            <---------AHL20(2) ------>ALFIN1                 <---------ANAC58      ----------->GT1                    <---------AHL20(1) -----ANAC58            <---------DAG2              --------->DAG2                      --------->AHL20(2) -----bZIP60(2)         <----------DOF2            --------->DAG2   <---------AHL20(2)  --------->AHL20(1) -----ANAC58        <---------ARR14(2)            ---------->DOF2  --------->AHL20(2)   <---------AHL20(2) -----ANAC46        --------->ARR14(2)      <----------ID1--------->ICU4   --------->TOE2(3)    -----   gtggcaaaaaaaaaattgttgggatactttttggcttgatgtcaaaaaaacaaaaaggtaataaggaaattttataatctcaaaacaaaatttattgggc  4693200    >>>>>>>>>E2Fc    >>>>>>>>>E2Fd   --------->LBD16   ------>NtERF2  --------->ANAC58  --------->ANAC46  --------->ANAC58 --------->MYB46(3) <---------MYB55(2) --------ARR14(2) ------->ARR14(2)                   --------->LBD16 --->NtERF2                     <---------ARR14(2) -------RAP2.6(3)               --------->ARR14(2) -------ATERF1(1)              --------->WOX13(1) ------->HVH21               ------------>CBF                                     --------->MYB52(1) ----->DEAR3(1)        <------------CBF                                          --------->RVE1(1) ------ETT(1)         --------->ATHB12    --------->DAG2                     --------->AHL20(2) ---->ATERF1(1)       -------->ATHB1------>NtERF2<-----------TBP       <----------ID1 --CBF                --------->ATHB51   ---------->DOF2               ----------->GT1  --------->ARR14(2) ---->DEAR3(2)       <---------YAB1--------->ANAC46                  ---------->DOF2  *TSS   cgacccgccaaaaacacatatgtattattgggccaatccgccaaaaagcccatttatacgatggaaacaaaaaaagaaaaaaaatatcggtatcgtcttc  4693300                                                                                  --------->At4g35610                                                                                 <---------MYB46(3)                                                                               <------NtERF2                                                                              ------>NtERF2   -------                                                                              <---------ERF1---------                                                                              <---------RAP2.3(1)                                                                             <---------ATERF1(2)                                                                             <---------RAP2.3(2)                                                                             <---------DEAR3(1)                                                                             <---------RAP2.6(2)                                                                             --------->ATERF1(2)-----                                                                             <---------ANAC46 <------                      --------->LBD16                                        <---------RAP2.3(3)-----                    <---------LBD16                                         --------->RAP2.6(3) -----           --------->HSFB2a(2)                                   --------->GLK1(1)<---------At4g35610           <---------HSFB2a(2)                    --------->GLK1(1)  <<<<<<<<<<<<<<<<<LFY------->GAMYB   tctctggtgttttccagtaattccctgagaagtagaagtagaagcgagaaggaattcgaagaaacagatttcaacaatggcggcagttcaacagcaacaa  4693400                                                                   <---------ANAC46                                                                  --------->LBD16                                                              --------->ANAC58                                                            <---------ALFIN1                      ---                                                  ------->TEIL--------->ANAC58                 <-----                                              <---------TOE2(3)   ------>NtERF2                ------ --------->AtLEC2        =====================================HOX2a_HOX2a    <----------DOF2   <----- -->MYB46(3)             <------ZmHOX2a(1)   <---------DOF5.7(2)  <------NtERF2                <----- -->RAV1(1)          --------->TOE1(2)       --------->MYB52(1)  --------->DEAR3(1)            <----- ---->ANAC58         --------->TOE2(2)     --------->DOF5.7(2)--------->ANAC46                 ====== ---MYB52(2)        --------->ANAC46--------->At4g35610   <-----------HVH21  ======================== ---->ANAC58  <----------DOF2    <---------At4g35610      ------>ZmHOX2a(1) <---------DAG2=========== ---->ANAC46  <---------DAG2     --------->At4g35610   <------ZmHOX2a(2) <-----------GT1  ---------->DOF2   gcgatgcagaagaacactttatacgtaggaggtttagctgatgaagttaacgaatcgatccttcacgccgcgtttatacctttcggcgatatcaaagacg  4693500                                                <---------MYB52(1)                                              ----------->GT1                                           --------->ARR14(2)                                           <---------GLK1(2)                                           <---------ARR14(2)                                    ------>ZmHOX2a(2)                                    <---------HSFB2a(1)     <------NtERF2                  --------->HSFC1(2)    ------>NtERF2                   <---------HSFC1(2)   --------->ANAC46                <------ZmHOX2a(2) ------>REM1(2)                   <---------GLK1(2) ----ANAC46                       --------->ARR11(3) --->O2 <---------MYB52(1)        <---------ARR11(3) ----O2<-------GAMYB              <---------ARR14(2)                                 ----------->GT1 ----TGA1a               --------->At4g35610 <-------TEIL                    <---------At4g35610 ----ANAC55(2)       --------->GLK1(2) <---------LBD16  <---------ANAC58     --------->At4g35610 ==============MYC_MYB --------->YAB1 ------>ZmHOX2a(1) <---------ANAC58    <-----------RAV1(1)     - ====bZIP_DOF   ------>MYB83      --------->ARR14(2)<----------DOF2    <---------HSFC1(2)        <--- ====bZIP_DOF   ------>MYB46(1) ----------->ARR10   <---------DAG2     --------->HSFC1(2)       <----   tgaagacgccgttggaccaagcgaatcagaagcatagatccttcggattcgttacttttcttgagagagaagacgcttctgctgctatggataatatgga  4693600                                                                                           <---------TOE1(2)                                                                                           --------->SPL7                                                                        --------->ALFIN1   <---------TOE2(2)                                                                        <--------P         ------->TEIL        <----------DOF2                                      <------MYB46(1)               <-------TEIL        <---------DAG2                                       ----------->GT1            --------->ANAC58  <----------CDC5                                            <------MYB83               --------->ANAC46 <---------At4g35610              <---------ICU4             <---------MYB46(3)         --------->ANAC58 <---------ZAT2                   -------->HAHB4            <---------AtMYB61  --------->At4g35610 --------->ZAT2              <---------MYB52(1)             <---------DEAR3(1) <---------At4g35610 --------->At4g35610        --------->At5g28300         <---------TOE2(3)    <---------DEAR3(1) -------->ALFIN1           <---------ZAT6    --------->LBD16--------->ALFIN1<---------At4g35610 ------DEAR3(1) <---------ANAC58  --------->YAB1        <---------TOE1(3) <------MYB83 <------------- -----ORA47(1)  <---------ANAC58 --------->ICU4        --------->MYB52(1) <------MYB46(1)<---------SPL7   cggtgctgagctttatggtcgtgttctcactgttaattatgctctccctgagaaaattaagggtggtgaacagggttgggctgctcatccacgtacgttt  4693700                                                      --------->ATHB12                     <---------ZAT18                                                  --------->ICU4                          <---------ZAT6   <---------At5g28300   <---------GLK1(1)       <---------TOE2(3)                    --------->ICU4 <---------ATHB12     <---------YAB1         --------->YAB1<---------LBD16  <---------TOE1(3) --AtSPL3          <----------DOF2     <---------At4g35610--------->ALFIN1  <---------TOE2(3)  <-----   ccaattactgtttctcttctccttttgatttctgaaatttgagctattgataatgttgatttgggggtttatgaaattagggtttgcaattagtgttctt  4693800  Previous    Next  AGI:  At1g13680.1    Description:  phospholipase C. similar to phospholipase C [Arabidopsis thaliana] (TAIR:AT4G36945.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49201.1); contains InterPro domain Phospholipase C, phosphatidylinositol-specific , X region; (InterPro:IPR000909) Range:  from: 4690406    to: 4692838    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g13690.1    Description:  ATE1 (ATPase E1); nucleic acid binding. similar to GR-RBP3 (glycine-rich RNA-binding protein 3), RNA binding [Arabidopsis thaliana] (TAIR:AT5G61030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64808.1); contains InterPro domain RNA recognition motif, glycine rich protein (InterPro:IPR015465); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 4693286    to: 4694407    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version