Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <------ZmHOX2a(2)                         == <---------YAB1                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxx ----ARR11(3)                                      <---------ANAC58                         <-------- ->ANAC46                                          <---------ANAC58       <-----------GT1   xxxxxxxxx ->ANAC58               <-----------GT1    --------------------->WRI1 <----------DOF2    ----------->GT1 ->ANAC58           <----------DOF2        <----------DOF2    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-   attcttattggttttagttttccttttcacatactctaaaaacttctttttttgcttcgatccatactctgacttttaaactcaccttggggagttaatt  4682800                   --------->ANAC58                   --------->O2                   <---------TGA1a                   --------->bZIP60(2)                   --------->TGA1a                   <---------O2                   --------->ANAC58                   ===============bZIP_DOF          <---------ZAT14     --------->ZAT14     <---------ZAT18                                                          <---------ALFIN1     <---------ZAT14                                                         --------->ZAT18     --------->ZAT18                           <---------YAB1                <---------ZAT18 <-----------RAV1(1)   <----------DOF2      <-------TEIL                   --------->PCF2 ============================bZIP_DOF    <---------ANAC58                  <---------ZAT18 <--------- xxxxxxxxxxxxxxxx>smallRNA(le3)          <---------ANAC46          --------->ARR14(2)   --------->ARR11(3) -AHL20(2)--------->ZAT14                <---------ANAC58          --------->ZAT14      <---------ARR11(3) xxxxxxxxxxxxxx>smallRNA(i2)       ----------->HVH21          --------->REM1(1)        <---------CCA1(2) ---------DOF2   <---------ALFIN1--------->ANAC55(2)----------->ARR10 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   tctttggtgcactatagagccacgtctttgagtttatgtgatggcgttcatgcttagagatgctacatgtatactcgtgcccacttcttatatcttttga  4682900                                                               <---------ANAC58                                                               <---------ANAC46                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               <---------ANAC58                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      --------->ARR11(3)             <---------YAB1       <---------AHL20(2)  <---------ARR11(3)          --------->AHL20(1)     --------->AHL20(2)  <---------CCA1(2)                              <          --------->ARR11(3)     <---------AHL20(2) ------->TEIL                       <xxxxxxxxxxxxx          <---------AHL20(1) --------->AHL20(2)  ----------->GT1                   --------->YAB1<xxx <-----------RAV1(1)  <----------DOF2            <---------ANAC55(2)    --------->ANAC55(2)     <---- -DOF2    <---------ARR11(3) <---------AHL20(2)  <---------ANAC46       <---------ANAC55(2) ---------   attttgttggaaaatattcttgttctttcaattttttaaattggttttgagacgtatatcttattccttgcattacatgatacaatattaaaaacttagg  4683000                                                                           <------------CBF                                                                         <---------ARR11(3)                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                         --------->ARR11(3)                                                                        <------ZmHOX2a(1)                                                                      <---------TOE1(2)     <-------TEIL                                                                      <---------TOE2(2)  ----------->GT1        --------->ARR11(3)                                         --------->ETT(1)      <---------MYB46(3)        <---------GLK1(2)                       <---------DAG2     <---------ANAC46 <-----------RAV1(2) ---------WOX13(1)          <---------ICU4      <----------DOF2  <-----------HVH21 --------->At4g35610 xxxxxxxxxxsmallRNA(si3) --------->YAB1     <---------ZAT18   <---------ANAC58     <------NtERF2 xxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <------ZmHOX2a(1)  <---------ANAC58     <---------ZAT2 --ZmHOX2a(1)           <---------YAB1<-----------HVH21       <---------AtLEC2     <---------At4g35610 >TOE1(2)<---------RVE1(1) <---------YAB1>>>>>>>GRF7 <----------DOF2 <------NtERF2----------->RAV1(1)   agattgatcagatttttagagagtttttgataattgtatttgtcaggacgcttttctttcgattgcatgtcggaggatattgggcagcagatggttcata  4683100               <---------ARR11(3)               --------->ARR11(3)        <----------ARF1                                                        <---------MYB46(3)     --------->At5g28300                                                       ----------->GT1     <------NtERF2                                                         --------->ALFIN1    <---------MYB46(3)                                --------->YAB1     <---------ANAC58   <---------DREB2C(2)                               --------->ICU4    <---------YAB1   <---------ANAC46 <-----------GT1              ------------>CBF   *TSS <---------ANAC58      <-----   <---------DEAR3(1)                 <---------ARR11(3)      <---------ARR14(2)       ----------->GT1   ccatggcggtgagacaagatgtttacagcttgattttgaagaccctagtttagcaatgttgacaaatatggttttgagtgctggttatacagaaaatatg  4683200                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                  <---------ANAC55(2)                                                                                  --------->ANAC55(2)                                                                             -------->HAHB4                                                   <---------ANAC46          --------->YAB1                                                   <---------ANAC58          --------->ATHB12                                                   <---------ANAC58          <---------ICU4                                               <---------GLK1(1)            <---------ATHB12                                              <---------ARR14(2)            --------->ICU4                                       --------->YAB1   <---------YAB1      <---------YAB1                                    <---------GLK1(2)--------->ALFIN1   <---------RAP2.6(3)                              <------MYB46(1) --------->ARR14(2) <---------bZIP60(2)   <---------ZAT14                              <------MYB83   <------ZmHOX2a(1)   <-----------RAV1(1) --------->REM1(2)                  ----------->RAV1(2)--------->GLK1(2)<---------ANAC46----------------->AGL1        - ----YAB1<-----------GT1     --------->MYB59--------->ICU4       <---------REM1(1)<---------ANAC55(1)   agtaagttttcttacttcccatctggagaagtaggtcagaatcgtaaggatttgtgtggtgatagtgatgttgccgaaatgattacgtgtacacatgagt  4683300                                   <--------HAHB4                                   <---------ICU4                                  --------->ICU4                =======================RAV            --------->AHL20(2)    <---------YAB1            <---------AHL20(2)   <---------ARR11(3)                                         <--------      --------->ANAC58           --------->ARR11(3)                                         <--------      --------->ANAC58       --------->At4g35610               ---------->DOF2   <---------ARR14(2)  --------->ANAC58           <---------At4g35610      --------------->AGL15     <------ZmHOX2a(1)  --------->ANAC58         <-----------RAV1(2)        <---------------AGL15   --------->ALFIN1 --------->DOF2 <-----------RAV1(1)--------->YAB1     <---------YAB1   <------ZmHOX2a(1)    ---------   tggaaagcaagaatttatatgttgttagggcagatgatcattatctagatgatgttcttattggagaaagggaggaagaagaggagcctgagagtgaaca  4683400                        --------->ETT(2)                <---------ICU4               --------->ICU4                --------->ICU4    <---------ICU4 <---------ICU4            <---------YAB1 -ZAT18        <---------YAB1           <---------At4g35610   --------->ARR11(3) -ZAT14 <---------At5g28300           <-----------RAV1(2)     <---------GLK1(2)                     < >ZAT18<-----------GT1  <---------ETT(2)--------->At4g35610   <---------ARR11(3)           ----------   acttgatttttaccgtgatgattatgtcgagagtgatgactcagatgatgatggtgctagaatagatttttatgtagggcaagagtttgtttctaaagag  4683500                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)                                                                ---------->DOF2                                                             ============================HOX2a_HOX2a                                                            <------ZmHOX2a(2)                                                            --------->CCA1(2)                                                            =============================HOX2a_HOX2a                                                           --------->AGP1                                                           <---------ARR11(3)                                                           --------->ARR11(3)                                                           <---------ARR14(2)                                               <-------TEIL--------->ARR14(2)                   <----        --------->CCA1(2)                     <-----------GT1------>ZmHOX2a(2)       --------->ALFIN1     ----------->GT1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx    <---------TOE2(3)                 ----------->GT1     --------->GLK1(1)          xxxxxxxxxxxxxxxx ---------ZAT6                       --------->DAG2       <---------GLK1(1)          xxxxxxxxxxxxxxxx >DOF2<------ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->GT1<------ZmHOX2a(1)<-   aagtgtaaggatacaattgagaagtatgctattagagagaaggtgaatatacattttaagagatccgaaaggaataaaatagaaggagtgtgtgttcagg  4683600                --------->ARR14(2)                <---------ARR14(2)                --------->ARR11(3)                <---------ARR11(3)         ----------->GT1        --------->ALFIN1                                                   <---------At5g28300   <--- --ZmHOX2a(1) --------->GLK1(2)                                           <-----------GT1     ------- xxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(se3)                              <---------MYB46(3) <---------GLK1(1)------>ZmHOX2a(1) xxxxxxx>smallRNA(fl3)                             <--------P          --------->GLK1(1)============= --------MYB46(3)--------->CCA1(2) <---------MYB46(3)            ---------->DOF2<---------MYB46(3)   attgttgcaagtggagaatatatgcatcaataaccagtcgttcagacaaaatggttgttcaatcttacaaaggaattcacagttgttatcctataggtgt  4683700  Previous    Next  AGI:  At1g13660.1    Description:  transposable element gene. Mutator-like transposase family, has a 2.6e-36 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 4683168    to: 4685637    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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