Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ANAC58                    --------->MYB46(3)      --------->AtLEC2                   --------->ANAC46         --------->ANAC58                           --------->DAG2                 <-----------GT1           <-------MYC3                               ---------->DOF2                <-------TEIL               ------->MYC3                 --------->AtLEC2              --------->ARR14(2)           ------->MYC2                 --------->ANAC58     <---------GLK1(1)                     <-------MYC2                 --------->ANAC58   <---------MYB46(3) ->ZmHOX2a(2) <---------ARR14(2)        <---------ALFIN1       <---------YAB1       --------->ARR11(3)   gcttatgaaatctggagattcacccatctaaaaacattttcaacacatgcaaaatcacatcaatgctcattaacatgcaaacagaagataaagttgttgc  4644000                                                                           --------->YAB1    <-------                                                       --------->YAB1      <---------ICU4    <-------                                               --------->GLK1(1)           <-----------GT1   <-------                                              --------->ARR14(2)          --------->MYB46(3) <-------                                            --------->ANAC46 --------->TOE2(3)          <---------ICU4                                            --------->LBD16  --------->TOE1(3)         --------->AHL20(2)                                           <---------HSFB2a(2)            <---------ATHB12 <---------AHL20(2)                           ------->TEIL    --------->HSFB2a(2)       --------->TOE2(3) <---------AHL20(2)           --------->TOE1(2)              <---------LBD16    --------->TOE1(2)<---------ALFIN1      -   atttgacttcaaacctagaaaaattgatgaatttcaattcaattcccagaaacccattcaaaaccttagaaccctaatcaccactctaaaaaattacttg  4644100     --------->TOE2(3)                    --------->ANAC58  <-----------GT1                         --------->ANAC58 --ANAC58                                 --------->ANAC46 --ANAC58      --------->CCA1(2)       --------->TOE2(2) --ANAC46   <---------TOE2(3)   <----------DOF2                              ----------->RAV1(1) --ANAC55(2)<---------YAB1     <---------DAG2   ---------->DOF2             <----------ID1 -------->AHL20(2)          <-----------GT1 ---------->DOF2               --------->AtLEC2   aattaaaccacaataagatagacaaaagtttcacctttttatctacgaaagaaagagacagagattgcgatttgcaatgcaacaaaacaaaaactcgaaa  4644200                                                               <---------MYB52(1)                                                              <-------GAMYB                                                             <---------MYB46(3)                                                             --------->MYB52(2)                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                          <-----------HVH21                                                          <---------MYB52(1)      <---------WRKY18(1)                        ---------->DOF2                  <---------DEAR3(2)     <----------DOF2                --------->CCA1(2)         ---------->ID1--------->DEAR3(1)     <---------ANAC46               --------->ARR11(1)   <----------DOF2   --------->LBD16   ----------->HVH21               <---------ARR11(3)  <---------DAG2     ------>NtERF2 <---------ZAT14           ---------->DOF2         --------->TOE2(3)<---------LBD16 <---------At4g35610 --------->ALFIN1   tttgaattacccagaaagatttgagaaaaagactcaacctttttgtctccttgttccgccggtccgttggagcagtgaccggcttgaacggtggagtttc  4644300                        --------->ARR11(3)                        <---------ARR11(3)                        --------->ARR14(2)                        <---------ARR14(2)                        <---------GLK1(2)                      <---------TOE2(2)             <---------ARR11(3)          <---------ANAC58                      <---------TOE1(2)             --------->ARR11(3)   <---------TOE1(3)                   ------>ZmHOX2a(2)                <---------GLK1(2)    <---------TOE2(3) ==========                  <------ZmHOX2a(2)           <-----------GT1           ---------->DOF2    ----------                 <---------ARR11(3)   --------->GLK1(2)       <----------DOF2   <---------ANAC58                 --------->ARR11(3) <---------At4g35610       <---------DAG2  <---------DOF5.7(2)   -   aaatggggaaatagcagaagatcgcagattttgctctcagcatctgttttactagattttcttacttttgcgattaaagttagcgttttggccaaaagtc  4644400                         --------->At5g28300                         <-------GAMYB                        <---------MYB46(3)                     --------->MYB52(1)                     ------------>AtMYB77                    ----------->TGA1                    ----------->HVH21                   *TSS ----------->GT1                   <-------MYC3                  --------->O2   --------->AHL20(1)                  <---------O2   --------->AHL20(2)                  --------->TGA1a<---------AHL20(1)                  --------->ANAC58                  ================MYC_MYB                  --------->bZIP60(1)                  ===============MYC_MYB                  <---------TGA1a<---------AHL20(2)                  --------->ANAC55(2)                  --------->ANAC46         <---------AHL20(2)     <---------GLK1(2) <---------ANAC46   --------->AHL20(2)            --------->YAB1     --------->HSFB2a(2)     <---------ICU4------->MYC3 --------->AHL20(2)    --------->YAB1    --------->AHL20(2) <---------HSFB2a(2)  --------->YAB1  --------->ANAC58    --------->AHL20(1)            --------->ZAT6  <---------DAG2 ===========================bZIP_DOF  <---------AHL20(1)           ------------>CBF <----------DOF2 >DOF2          <-------------DYT1    <---------AHL20(2)    <---------DAG2 --------->AHL20(2) -------->AHL20(2)<---------ANAC55(2) --------->AHL20(2)    <----------DOF2<---------AHL20(2)   aatttcataatctctcgctcacgtgacggttacattatattatattatatagtatttcataacttttctaacaataaaaaattcaacttttttctagcac  4644500                                                                                                    -                  ------------>CBF                                                             ------            --------->CCA1(2)         <---------SPL7------->TEIL         --------->ATHB12      ------         <---------TOE2(3)           <---------ANAC58                   <---------YAB1  <------------         <---------YAB1              <---------ANAC58   <---------YAB1--------->YAB1   ------>ZmHOX2a(2)     <----------DOF2                 <---------ANAC46 --------->YAB1--------->ARR11(3) --------------   atacttactttaagatagaagacaatggcaatgtattaggcgtatgagaacatgaatcaacattgatatatatcatgaatggtgagtgatccaaaacaag  4644600 -------->ICU4 --->ANAC58                                            ------>ZmHOX2a(1)       <------MYB83 --->ANAC58                                          ----------->RAV1(2)       <------MYB46(1) ---AGL15                   --------->AHL20(2)       --------->At4g35610      <---------AtMYB61 --->AGL2          --------->ZAT6            <-------TEIL      <---------MYB52(1)              <-----   aaatgaatacaaaatttgttcagactacaattcaatacaactacagtttcatgtctcctgaatcagttatgttccatgagttggtccaatgttagagatt  4644700                                                                            <---------HSFB2a(2)                                                                            --------->HSFB2a(2)                                                                           ------>ZmHOX2a(2)                                                                          --------->CCA1(2)                                                                          <------ZmHOX2a(2)                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)                                                                         --------->AGP1                                                                         <---------AGP1                                                       --------->ICU4    --------->GLK1(2)                                                  --------->ANAC58       <---------ARR11(3)                            --------->ATHB12      --------->ANAC58       <---------ARR14(3)           <---------YAB1  <---------YAB1  <---------------AGL15         --------->ARR11(3) ----------->GT1         --------->YAB1   ------>ZmHOX2a(2)              --------->ARR14(3)       --- ----WOX13(1)          --------->ARR11(3) ----------------->AGL2       ----------->ARR10 --------->ZAT6   gatgagttatatcaacattgatatatatcatgaatggtgagtgatccaaaacaagaaatgaatacaatacaagaagatctggaatttgttcagactacaa  4644800                                                                                                -----                                                                                                -----                         ------>ZmHOX2a(1)       <------MYB83                     ------>ZmHOX2a(1)                       ----------->RAV1(2)       <------MYB46(1)                  ===================               <-------TEIL      <---------MYB52(1)                              --------->ANAC46 ------>AHL20(2)       --------->At4g35610      <---------AtMYB61<---------WOX13(1) <---------ALFIN1   ttcaatacaactacagtttcatgtctcctgaatcagttatgttccatgagttggtccaatgttagagattgatgactcagtctcctccactcttaaacac  4644900  Previous    Next  AGI:  At1g13570.1    Description:  F-box family protein. Identical to F-box/FBD/LRR-repeat protein At1g13570 [Arabidopsis Thaliana] (GB:Q9FZ70;GB:Q7FLD2); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56370.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56370.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15368.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 4642343    to: 4644419    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g13580.1    Description:  LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3). Identical to LAG1 longevity assurance homolog 3 [Arabidopsis Thaliana] (GB:Q6NQI8;GB:Q9FZ69;GB:Q9LMZ0); similar to LAG1 (Longevity assurance gene 1) [Arabidopsis thaliana] (TAIR:AT3G25540.1); similar to Lag1 longevity assurance-like 3 [Brassica rapa] (GB:ABV89617.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Longevity-assurance protein (LAG1); (InterPro:IPR005547) Range:  from: 4644697    to: 4646850    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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