Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   ==                  <---------YAB1                                                                   <-               <---------MYB52(1)     --------->AHL20(2)                                     <-------            <---------TOE2(3)        --------->AHL20(2)                                      --------      --------->ICU4          ----------->GT1                          ------->TEIL   <---------bZIP60(1)    ----------->GT1   --------->YAB1 --------->YAB1        ========================================== ---YAB1 <---------YAB1 <---------ZAT6<---------AHL20(2)   <-----------RAV1(2)        --------->bZIP60(1) --AHL20(2) <---------YAB1 --------->YAB1                  ---------->CDC5       --------->YAB1 ----- --AHL20(1)<-----------GT1<---------YAB1                   <---------LBD16--------->ZAT14    <-------   ttcatatagttattatcgttactatagtattatagtgaattaaaattttaagcatcaaaactcaggggggatgaacttcactaaaatgatgtcaatatct  4541800        ================================bZIP_DOF        <----------DOF2        <---------DAG2    --------->TCP16(1)    --------->PCF5  --------->WRKY38(1)  --------->WRKY12 --------->ALFIN1 ------>PIF5 ------>MYC3                        <---------TCP20 -------PIF5                        --------->PCF2 ------>MYC2                        <---------TCP15(1) -------MYC2                       --------->TCP15(1) -------MYC3                       <---------PCF2 ------->O2                    ------->MYC3 ------->TGA1a                 <-------MYC3 --------O2                   <---------TGA1a --------bZIP60(2)            --------->TGA1a                          <---------ICU4 --------TGA1a                --------->O2                     ----------->RAV1(1) ==================bZIP_DOF   <---------O2                    --------->ANAC46 --------ANAC46             <---------ALFIN1                --------->ANAC46 --ARR11(3)               ----------->RAV1(1)              <---------ZAT18 ->ARR11(3)               <---------ALFIN1               --------->ANAC46 ========MYC_MYB         <---------ZAT18             --------->ANAC46 <-------TEIL                <-- ------>HVH21          --------->PCF2  <---------ALFIN1 --------->DEAR3(1)               ------>ZmHOX2a(1) ----ARR10            <-----------TCP11(1)       --------->AtLEC2 <---------ARR11(3) ---------->ID1   cacgtggaccctttatccattccatggcccacacatgggtcccacttccccatgcacacagcccacaacatattcatttctatatttgttcctatactct  4541900                                                        <---------ANAC58                                                --------->ATHB12                                                --------->ATHB51                                                <---------ICU4                                               <---------YAB1      <---------------AGL15                                            <---------YAB1         ==================================                                     <---------AHL20(2) <---------ANAC46        --------->TOE2(3)                                    --------->YAB1   <---------ANAC58 <---------HSFB2a(2)                     --------->AHL20(1)   <------ZmHOX2a(1)        --------------->AGL15                     --------->AHL20(2)  --------->ICU4 <---------ANAC58       --------->REM1(1)     <----------DOF2 <---------AHL20(2) <---------TOE2(3)  <---------TOE1(2)  <-------TEIL --------DOF2  --------->TOE2(3)   <---------YAB1    <---------ANAC58 --------->HSFB2a(2)   cttttctctttttcttacataaataaaatactaacttattataaggattattattgcttcgtgtgttttcttctataagttacatcaacagttcatgaaa  4542000                       <---------AHL20(2)                                                 --------->ANAC58                      <---------AHL20(2)                                                  --------->ANAC46                      --------->AHL20(2)               <---------HSFB2a(1)                --------->ANAC58                --------->TOE1(3)          <---------YAB1    <----------DOF2  >>>>>>>>>>WRKY6                --------->TOE2(3)    <---------AHL20(2)--------->HSFB2a(1)    >>>>>>>>>>WRKY11                <---------MYB59 --------->ARR14(2)     <---------HSFC1(2)    ----------->HVH21   --------------->AGL15        <---------ARR14(2)     --------->ZAT2        --------->WRKY45   <---------------AGL15      --------->LBD16          --------->At4g35610   --------->WRKY38(1)  <-----------------AGL3     ----------->GT1           <---------At4g35610   --------->WRKY12  ----------------->AGL3     <---------ANAC58          --------->HSFC1(2)  <---------At4g35610  ----------------->AGL2     <---------ANAC58         ------->TEIL         --------->At4g35610   <--- ===================MADS_MADS<---------ANAC46      --------->ANAC46   <----------DOF2   --------->ANAC46   tagaccctaatatagtaacctaaattaaatgccgtatatttcattatgtttccacgaagcttcctttgtgttctttgagttgacccatacacacccatct  4542100                                                           --------->ARR11(3)                                                           <---------ARR11(3)                                                           <---------AHL20(1)           ------->PIF5                                    <---------AHL20(2)           <-------PIF5                                    --------->AHL20(1)          <---------At4g35610                              --------->AHL20(2)        ----------->GT1          --------->At4g35610                             --------->AHL20(2)        --------->DAG2          ----------->RAV1(2)               --------->ANAC58                  ------>MYB46(1)         ------->TEIL        <-----------GT1--------->ANAC55(1)             <---------MYB59      --------->AtLEC2    <--------HAHB4    --------->ANAC55(2)          <-----------GT1       ------      --------->ANAC58    --------->YAB1    --------->ANAC46  <---------AHL20(2)--------->AHL20(2)  -      --------->ANAC58    <---------ICU4    <---------ANAC55(2)  *TSS<---------YAB1---------->DOF2--- --------GT1             <---------YAB1     --------->ANAC58<---------AHL20(2)------>MYB83  ---------   tacttcccatgcacctgcacatatactataattactcccctcaaacacgcattcttacaaatatattttttgttattaccaaataaaaagtgaaacataa  4542200                                                                                       --------->ANAC55(1)                                                                                       <---------ANAC55(2)   --------->AHL20(2)                            --------->ARR11(3)    --------->AHL20(1)   <---------ICU4                              --------->ANAC58   --------------->AGL15--------->ANAC55(2)   --------->YAB1                              --------->ANAC58   <---------------AGL15--------->ANAC58 --->AHL20(2)                                <---------ALFIN1 <----------DOF2          --------->ANAC58 -------->YAB1                             --------->ANAC46------>ZmHOX2a(1)       <---------ALFIN1-- ------>AHL20(2)                   <-----------GT1  <----------DOF2    <---------AHL20(1)       <---- >YAB1        ----------->HVH21   <-----------GT1<---------ARR11(3)   <---------AHL20(2)        -----   aataataatatcagaagtgacacttgctgtttcttatttccctccccccaagctctttctccttctttctatatatattatacacacacacgtatacata  4542300             --------->ANAC46           <-----------GT1  ----------->RAV1(1)                                                                        <------- --------->ANAC46                                                                            <------- ------->ANAC46                                          --------->TOE2(3)                   <------- -----ARR14(2)     ----------->RAV1(1)    >>>>>>>>>>>>>>>>>LFY               <---------AHL20(2) ---->ARR14(2)    --------->ANAC46       <-----------GT1 --------->TOE1(3)  --------->AHL20(2)      X   tacacaacataattcacaacacaacacaaacacatttctgttttctccattgtttcaaaccataaaaaaaaacacagattaaatggaatcgagtagcgtt  4542400                                                                     <------MYB46(1)                                                                     ----------->GT1                                                                     <---------ANAC55(2)                                                                     <------MYB83                                                                     --------->ANAC55(2)                                                                    --------->MYB111(2)                                                                    --------->MYB59                                                                    <---------MYB46(3)                                                                    --------->MYB111(1)                                                                    --------->MYB46(2)                                                  --------->LBD16  <---------MYB55(1)                                                  ------>NtERF2   <-------GAMYB                                                 <---------DEAR3(1)<--------P                                                <---------LBD16   <---------MYB52(1)    <---------ZAT14                    <------NtERF2             <---------MYB46(3)             <----    --------->ZAT18                   --------->LBD16            <---------DEAR3(2)            <----- --ANAC58                             ------>NtERF2             <---------DEAR3(1)             ------ --ANAC46                            <---------DEAR3(1)        <------NtERF2               <---------At4g35610 --ANAC58      <-------TEIL          --------->LBD16     --------->DAG2            ================== XXXXXXXXXXXXXXXXXXX>MIR400         <---------LBD16     ---------->DOF2            <------ZmHOX2a(1)   gatgagagtactacaagtacaggttccatctgtgaaaccccggcgataactccggcgaaaaagtcgtcggtaggtaacttatacaggatgggaagcggat  4542500                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                      ------>MYB83                                                                                      ------>MYB46(1)                                                                                     --------->MYB55(1)                                                                                    ------->GAMYB                                                                                    --------->AtMYB61                                              <---------HSFC1(2)                   --------->MYB46(3)                                              --------->At4g35610                 --------->ANAC58                                              --------->HSFB2a(1)                 --------->ANAC58                                              --------->HSFC1(2)             <------NtERF2                                              <---------At4g35610           ------>NtERF2                                     ------->TEIL                        <---------ANAC58      <---------ZAT6            --------->At4g35610                      <---------ANAC58 --ZmHOX2a(2)                   <---------At4g35610   <---------ETT(2)  <---------AtMYB61      ------ ----ARR14(2)            <---------ANAC46     <---------HSFB2a(1)       --------->ALFIN1--------->ANAC46 --->ARR14(2)       --------->MYB52(1) --------->TOE1(2)              --------->ALFIN1--------->MYB52(1) ==HOX2a_HOX2a<-------TEIL <------NtERF2   <------ZmHOX2a(1)     ---------->DOF2--------->MYB46(3)   caagcgttgtgttagattcagagaacggcgtagaagctgaatctaggaagcttccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatg  4542600                                                                               <-----------HVH21                                                                              <---------TGA1a                                                                              --------->TGA1a                                                                              --------->bZIP60(2)                                                                              --------->bZIP60(1)                                                                              <---------bZIP60(2)                                                                              <---------bZIP60(1)                                  <---------ANAC58                            <---------O2          -                                  <---------ANAC58                            <---------DEAR3(1)    <                                  <---------ANAC46                            --------->O2        <--                               --------->ALFIN1                            --------->ANAC46      <---          <-----------GT1    --------->ALFIN1                              ----------->HVH21  -------        --------->CCA1(2)   ------->MYC2                                  --------->SPL7      <------       --------->ARR14(2)   <-------MYC2                                --------->TOE1(2)  <---------TOE2(2) <---------ZAT2             <-------MYC3                            ------->PIF5           <---------TOE1(2) --------->At4g35610        ------->MYC3                            <-------PIF5       --------->ZAT14 --------->ZAT2            <---------ANAC58                         <-------MYC3       <---------ZAT14 <---------At4g35610       <---------ANAC46                         ------->MYC3       <-------TEIL-- <---------GLK1(1)         <---------ANAC58                         <-------MYC2      <-----------HVH21 --->ALFIN1                -------------->OsCBT       <----------ID1------->MYC2   <------NtERF2 <---   gggagctcagatttacgagaaacaccagcgcgtgtggctcgggacattcaacgaagaagacgaagccgctcgtgcctacgacgtcgcggttcacaggttc  4542700  Previous    Next  AGI:  At1g13260.1    Description:  RAV1 (Related to ABI3/VP1 1); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor RELATED TO ABI3/VP1 1 (RAV1) [Arabidopsis Thaliana] (GB:Q9ZWM9); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G25730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68564.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 4542165    to: 4543739    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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