Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->LBD16                                                <---------ERF1                               ------>MYB83    <---------RAP2.3(3)                               ------>MYB46(1) <---------DEAR3(1)                               -------->P <---------ICU4                             <---------MYB111(1)<---------RAP2.3(1)                     <---------ANAC55(2)  --------->YAB1                     --------->ANAC55(2) <---------YAB1                    <-------TEIL       <---------ICU4     <-----------ARR10       <---------MYB59   <---------RRTF1(3)  <---------ALFIN1--------->ARR14(2)  --------->ICU4   <---------WOX13(1) -->YAB1          <---------ARR14(2)--------->YAB1<---------ANAC46 --YAB1       <---------At4g35610  <---------YAB1<------NtERF2                 <-----------HVH21 >AHL20(2)--------->ANAC46   <---------MYB46(2)<---------RAP2.3(2) --------->MYB46(3)   agtcacacatcttcgcagcaaatacgtcttacctactctcattatcatggctgcgcgattgactattcaaacaccatttcatgtcatgtatgagcaaatt  4515200                      --------->YAB1                      <---------ICU4                   --------->YAB1                --------->YAB1                -------->HAHB4               <---------YAB1             --------->YAB1                       ------->MYC3                         <---------TOE2(3)            <---------AHL20(2)             -------->HAHB4                              <---------TOE1(3)            --------->AHL20(2)            --------->ICU4                              ---------->DOF2           <---------AHL20(1)             <---------YAB1                             <---------AHL20(2)           <---------AHL20(2)           --------->YAB1                           <---------AHL20(2)           --------->AHL20(1)           <---------ICU4                  <---------TOE2(2)           --------->AHL20(2)  <----------DOF2    <-------MYC3         ------>ZmHOX2a(1)       <---------AHL20(2)<---------ICU4<---------ATHB51  --------->MYB52(1)     --------->AHL20(2)     <---------ANAC55(2)--------->ICU4 <---------ATHB12 <---------WRKY38(1)     <---------AHL20(2)     --------->ANAC55(2)<---------YAB1 --------->ICU4   <---------WRKY12<---------TOE1(2)      <-----   gagtcttatgtaatttaataatagtcattatcgctttgacaataatgatgcatatgggacaacggttttattcctatgtttataaatttaaagttagctt  4515300                                                                               --------->ANAC55(2)                                                                               <---------O2                                                                               <---------TGA1a                                                                               <---------ANAC55(2)                                                                               --------->O2                                                                               --------->TGA1a                         ----------->GT1                                     <---------WRKY38(1)                         <---------REM1(1)                                  --------->WRKY18(1)                <---------AHL20(2)                                         <-----------HVH21            <---------CCA1(1)                                              <--------ZAP1            <---------RVE1(1)               --------->ANAC58            <---------At4g35610           --------->ARR11(3)               --------->ANAC58            --------->At4g35610    <-----           <---------AHL20(1)        --------->ARR11(3)            --------->ANAC46    <---------MYB52(2)         ----------->ARR10           <---------ARR11(3)        <-----------HVH21 ----------->HVH21 --------->MYB52(1)    ----------->GT1<------ZmHOX2a(2)       ===========================bZIP_DOF -----DOF2 <---------ARR11(3)    ---------->DOF2              <----------DOF2<---------WRKY12 -------   tactaacagataagatattttaagatggtgtaacaaaaagatcaacaagaaaaacaaatgttcactttcacatcagcggtcaagtgacgactaacattta  4515400                                                           <<<<<<<<<<<<<<<<<LFY                                                       <---------ARR14(2)        --------->ARR11(3)                             --------->ARR14(2)          <-----------GT1        <---------ARR11(3)                      ------->GAMYB                     <---------AHL20(2)   <---------HSFB2a(2)                      ----------->HVH21              --------->LBD16   --------->HSFB2a(2)          <---------ARR11(3)     <---------ARR11(3) <---------ANAC46 ----AHL20(2)                   --------->ARR11(3)     --------->ARR11(3)<---------LBD16 -->AHL20(2)                   --------->YAB1--------->MYB52(1)      <----------DOF2   atattctagacatcttcttagccctcttcttaattatcttgtagctctaacgggccagatattacattgggcttttgcgcatatttaactgttttaggcc  4515500                                  <------NtERF2                                 <---------RAP2.3(1)                                 ------>NtERF2                                <---------DEAR3(1)                              <-----------HVH21                             ====================bZIP_DOF                             <---------TGA1a                             --------->TGA1a                       <---------MYB59     <---------DAG2                    <-----------GT1     <-----------GT1                               <-----------HVH21                <----------DOF2 <---------At1g77200    --------->LBD16               <---------bZIP60(1)                =======================bZIP_DOF  <---------AHL20(2)                  --------->bZIP60(1)               <---------DAG2--------->O2  <----------DOF2                     <---------MYB52(1)            <-----------GT1  ====================bZIP_DOF------>NtERF2        <---------RAP2.6(3)      ----------->GT1 --------->ANAC46<----------DOF2<---------LBD16    ---------->DOF2             -   caaaacaaatgtaattacctttttacctcactcgtcggcgatttactttttttaatcggggacttcaaaattcttgaagccgttgtgttgtcagagagag  4515600                                                                                                    -                                                                                                    <                                                                                                  <--                                                                                                 ----                                                                                             <-------                                                                                             --------                                                                                        --------->ANAC46                                                                                        --------->LBD16                                                                                       --------->DEAR3(1)                                                                                       <---------ATERF1(2)               <---------------AGL15                           ----------->RAV1(1)     --------->DREB2C(2)              <-----------------AGL2                          ----------->HVH21        --------->ATERF1(2)              <-----------------AG                          --------->ANAC55(1)       --------->At4g35610              <-----------------AGL3                        --------->ANAC46          <---------LBD16              <-----------------AGL1        <-----------GT1 --------->ANAC58       ----------->HVH21-   *TSS    <---------GLK1(1)   <---------TOE2(3)     <---------TOE2(3)            <-----------HVH21-- --------->DOF2--------------->AGL15     --------->AHL20(2) --------->ANAC58    ------->TEIL --------   aagaaagagatagatttctcattttgggaaattagggttccaattttttcgaactaatgttcacgccacagagaaaacaatggatgtcaccggcaatgac  4515700                                                                        <----------DOF2                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                    <---------MYB52(1)                                                                    <--------P                                                                   <-------GAMYB  ---------->DOF2                    --------->TOE1(3)            <---------DEAR3(2) -------->HSFB2a(2)                 --------->ZAT6                --------->MYB55(2) ---------HSFB2a(2)       <------NtERF2                           <---------MYB46(3) ----NtERF2             <---------DEAR3(1)                       <---------RAP2.6(2) -->NtERF2             <---------ABI4(1)                         <---------DEAR3(1) --ATHB12       --------->AHL20(2) -------->P                  ------------>AtMYB77 --->HVH21 --------->ANAC58   <-----------GT1                 --------->DAG2 ----->NtERF2  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        ---------->DOF2                       -- ------->DEAR3(1)---------->DOF2<---------MYB52(2)          ---------->DOF2    --------->YAB1    ---- --->TGA1  --------->ANAC58--------->ALFIN1            ---------->DOF2 <---------ANAC58          ----   gccgagaagcgagacgcataaaatcggcggtgttactaaccctagaaacgctgatagaaaaggaaaggcggttgctttcagtgatgacctagtaataccg  4515800           ------>NtERF2          --------->DEAR3(1)        ------>NtERF2                                                        <---------WOX13(1)        <---------ATERF1(1)                 <---------HSFB2a(2)     <---------GLK1(1)       <---------ALFIN1                  <---------ARR14(2)   --------->CCA1(2)       --------->ANAC46               <---------ANAC58       --------->ARR11(3)       --------->DEAR3(1)             <---------ANAC58     <---------YAB1  --------->ATHB12     ------>ZmHOX2a(1)          --------->WRKY18(1)      --------->YAB1    <---------MYB46(3) ------->HSFB2a(1)         --------->MYB52(1)     ----------->HVH21 --------->CCA1(2)              <- -->MYB46(1)             ----------->HVH21  --------->HSFB2a(2)    <---------ARR14(2)              <- -->MYB83--------->ATERF1(1)  ----------->HVH21  <-----------HVH21 --------->ARR14(2)            ----   actcttcctccgcctccgattggaacactgaccggacaaggcgtttctcgaggtcacactgatgatatggatatgggtgattggagaaggtttagggaag  4515900                                                               <---------ALFIN1                                                              <---------REM1(2)                                                          ------>ZmHOX2a(2)                                                         <------ZmHOX2a(2)                                                         --------->GLK1(1)                                                        <---------AGP1    <-------GAMYB                         <---------ARR11(3)  <---------ZAT14   --------->MYB52(2)                     --------->ARR11(3)  --------->ZAT14      <----------DOF2   <---------MYB46(3)             <------ZmHOX2a(2)     <---------ARR11(3)        --------->TOE1(3) -----MYB83                      <---------ARR11(3)     --------->ARR11(3)        --------->TOE2(3) -----MYB46(1)                   --------->ARR11(3)    --------->RVE1(1)--------->DAG2              - ----->ALFIN1                ---------->DOF2        ---------->DOF2    ---------->DOF2              <   tgggtttgttgaatgaggcttcaatggagaagaaagatcaagaagctcttcttgaaaagatctctacacttgaaaaagaggtaacctttatcaacaattt  4516000                                                                                             <-------                                                                                             <-------      --------->At4g35610                         ---------->DOF2                            --------      <---------At4g35610                 <---------At4g35610                            <---------YAB1 <---------ARR14(2)                       --------->At4g35610                         <----------DOF2 --------->KAN4(2)                     <---------MYB52(1)                            <---------ANAC58 -------->KAN4(1)                     <----------DOF2                 <-----------GT1<---------ANAC58 ---------KAN4(1)    <---------YAB1  --------->TOE2(3)      --------->ICU4 <----------DOF2--------->YAB1   gaatattctgctctcatgggtttatgatgcaattggtaacctttagctgtctgaaagttgaaatgagtgttttgactctttgttatggcttttgataagt  4516100  Previous    Next  AGI:  At1g13220.1    Description:  LINC2 (LITTLE NUCLEI2); protein binding. similar to LINC3 (LITTLE NUCLEI3) [Arabidopsis thaliana] (TAIR:AT1G68790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42073.1); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 4515603    to: 4517531    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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