Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->LBD16                        <---------ANAC46                        <---------HSFB2a(2)                        --------->ANAC55(2)                     --------->ARR14(2)             --------->ANAC46  <---------YAB1            --------->LBD16<---------GLK1(2)                                         <---------ARR11(3)     --------->AHL20(2) <---------ANAC55(2)                                     <---------ATHB12<----     <---------AHL20(2) --------->HSFB2a(2)                                    --------->ANAC58 >>>>>    --------->AHL20(2) <---------LBD16                                         --------->ANAC46 <---- --------->YAB1      <---------ARR14(2)                                        --------->ANAC58 ----- ------->ANAC58   --------->DAG2                       --------->YAB1     <-----------GT1    -------- ------->ANAC58  ---------->DOF2 --------->WOX13(1)   <---------YAB1 <----------DOF2 --------->ARR11(3)   caagcattaaattccacagaaaagttccggattatcaatcgtctaattgtcaagttatcattttttataagcttttattccactcaagagcttaagttct  4498500             <---------ICU4            --------->ICU4          --------->YAB1                                            --------->ICU4 -----HSFC1(1)                             <---------AHL20(2)     --------->YAB1 >>ZML2  <---------YAB1       <---------DAG2                      --------->AHL20(2) -----HSFB2a(2)   <---------TOE2(3)  <---------ANAC46      ----------->GT1               ----------->GT1 ---->HSFB2a(2) <---------AHL20(2)<---------YAB1      --------->AHL20(2)--------->AHL20(2)    <------ ->ARR11(3) <---------YAB1    <----------DOF2         <---------AHL20(2)<---------AHL20(2) >>>>>>>>>GATA-1   agatgaaacacatgataattaagttttgtctactttatgatgtgttttattttttataaattagttaataatatttaaaattagacatgaatagataaac  4498600                                                                                                   --                                                                                               <-----                                                                <----------DOF2              <-------GAMYB                                                        --------->YAB1                      <--------                                                     <----------DOF2                     --------->GLK1(2)                                --------->AHL20(2)--------->AHL20(1)                   <---------CCA1(1)                                <---------AHL20(2)--------->ARR11(3)                   <---------RVE1(1)                             --------->TOE2(3)    <---------ARR11(3)                  <---------ARR11(3)      ----------->GT1  <---------ICU4             <---------AHL20(1)                  --------->ARR11(3) <----------DOF2     <---------ARR11(3)          --------->CCA1(1)                    --------->ARR14(2) -----GT1        --------->ANAC46                --------->RVE1(1)              ----------->GT1------   cttcttttgggtaaaatacacaaaatcattttcttaaattactcaaaacaaatatctttcattactctttggttttggagtaatgtaagatattctgttg  4498700                                              --------->ARR11(3)                                              <---------ARR11(3)        <----------ID1                       <---------CCA1(2)        ----------->GT1                  <---------AHL20(2)       <---------TOE2(3)                 --------->AHL20(2)       ----------->GT1                 --------->AHL20(2)     ---------->DOF2                 --------->AHL20(2)  --------->YAB1                    --------->AHL20(1)                      <-----------GT1         - <---------------AGL15              <---------AHL20(1)       --------->HSFB2a(2)       <---------ANAC46 ------->YAB1                      --------->AHL20(2)  <---------TOE1(2) <---------ICU4<---------ANAC58 ----MYB46(3)                  --------->AHL20(2)<----------DOF2        --------->ICU4 <---------ANAC58 ---RAV1(1)             ----------->GT1<---------AHL20(2)    <---------HSFB2a(2)<-----------TBP     - ----->GT1       <----------DOF2 --------->AHL20(2) --------->YAB1   <-------TEIL --------->YAB1    -   ttaataataaaggaaaaaactttcatgggaaaaaaaaatatatatatatatctttcatatgttctacaaaatacattattacatttatagcttgttgtat  4498800                                                                <---------ARR11(3)                                                          --------->At5g28300                                                      --------->MYB52(1)                                                   --------->bZIP60(1) --------->ZAT18             ------------>MYB.PH3(2) ----------->HVH21         <-----------GT1 -------->ANAC58           --------->DAG2       <---------ETT(2)--------->ARR11(3) -------->ANAC46          ---------->DOF2 --------->MYB52(1)---------->DOF2   *TSS <<<<<<<<<TBF1 -------->ANAC58   ---------->DOF2   <----------ID1<---------bZIP60(1)<----------DOF2              --   aaacgcactaaaaaaacatgtaaaagaaaaaagtttgttaagacaaactgttgacatcacggtgaagctcttctttcattttttcttcttctatcggata  4498900             --------->LBD16            --------->LBD16             =============HOX2a_HOX2a                                 <---       <---------HSFB2a(1)              ------>ZmHOX2a(1)                           <---------ANAC58       --------->HSFB2a(1)  --------->ANAC46                <----------DOF2     --------->HSFB2a(2)      <---------KAN4(2)  --------->ARR14(2)   ------>ZmHOX2a(2)                 <---------HSFB2a(2)-- -------->DOF2           <---------ARR14(2)  <------ZmHOX2a(2)     ---------->DOF2  <---------ANAC58   agaaagagaacatcccgagtctcgacgaatacgactctcttcctccgatctcatcaaaaactctttcgctaaagctctgtttctgggcgttcaaacaatt  4499000                          --------->ARR14(2)                          <---------ARR14(2)                       <---------ANAC46                       <---------ANAC58                       <---------ANAC55(1)           <---------ARR14(2) --------->LBD16           <---------GLK1(2)<---------LBD16            ---------->DOF2           --------->ARR14(2)--------->ANAC46          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <        --------->ETT(1)--------->LBD16  --------->ANAC58    --------->ANAC58                      <-       ---------->ID1  <---------ANAC58  --------->ANAC58    --------->ANAC58                      -- ------LBD16           <---------ANAC55(2)            <---------WRKY45                 <----------DOF2 ------->LBD16        ----------------->AGL1----------->RAV1(1)             <-----------GT1  <-------   ccggagtttgtcggattctcaacttccgtatacggagaaggtcgagcaacaagtagtcaaagtaagcaagcgtagttttttctctctgtctttttctttc  4499100                                                                                     ------>ZmHOX2a(2)                                                                                    <------ZmHOX2a(2)                                                                                   --------->ARR11(3)                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                                                                   <---------AGP1            <---------O2                                                           --------->AGP1            --------->O2                                                           <---------ARR11(3)            --------->ANAC46                                                  --------->TOE1(1)  <---   ------>ZmHOX2a(1)                                                         ===============HOX2a_HOX2a  --------->TOE2(3) <---------ATHB12                                         ==============HOX2a_HOX2a ------ZmHOX2a(2)  --------->ANAC58                                     <----------DOF2      -------- --------ARR14(2)  --------->ANAC58                                --------->At5g28300  <xxxxxxxxxxxx ------->ARR14(2) --------->WOX13(1)                         --------->WRKY12------>ZmHOX2a(1)<------ ---DOF2  <-----------GT1                         <-----------GT1 ----------->GT1 <---------CCA1(2) <   cgatcctcaatttcacgaggcaatcaattcaattctattcaattcgatgttcttactctctcgttgaactgtaactttcctcgtagatctagtttgtttc  4499200 ----------------->AGL1                      ----------->GT1 ----------------->AG                       ----------->GT1 -------DOF2                        --------->HSFB2a(2) -->ID1                         <---------GLK1(1) xxxxxxxxsmallRNA(fl3)   <---------YAB1 ---------->DOF2                                ------->TEIL-- -----GT1        --------->TOE2(3)  <---------HSFB2a(2)                        --------->ZAT6    ---- -----------------AGL1--------->ICU4<---------LBD16                       --------->ANAC46<---------AHL20(2)   ttttccgattttgtaagaaccctaatgtttatagatttctcggaaagggttaaaatttgtgtagccccttcattgtaagtcacactatgtatgtaatttg  4499300                                                                         <------ZmHOX2a(2)                                                                         =========================HOX2a_HOX2a                                                                        <---------AGP1                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                        <---------ARR11(3)                                                                        --------->ARR11(3)                                                                        --------->AGP1                                                                       <---------CCA1(2)                               ------->GAMYB                       <-----------GT1               <---                              <---------ALFIN1            ------>ZmHOX2a(2)                  <-------              --------->ICU4<-----------GT1              <------ZmHOX2a(2)             --------->ARR14(2)            ------->TEIL ----------->GT1                <---------ARR11(3)         ---------->DOF2<-- ---->ZmHOX2a(2)     --------->ARR11(3)                 --------->ARR14(2)------>ZmHOX2a(2)------>ZmHOX2a(1) ----->ARR11(3)      <---------ARR11(3)                 <---------ARR14(2)========================HOX2a_HOX2a   atctcttctatatgtatttatgaaatcttgtaacacccttgtttaaaaaatcgagctagatcccaaatttttcagatctgtaatctaaagttcctctttt  4499400  Previous    Next  AGI:  At1g13180.1    Description:  DIS1 (DISTORTED TRICHOMES 1); structural constituent of cytoskeleton. similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to actin-related protein 3 [Nicotiana tabacum] (GB:CAM97883.1); similar to actin related protein Arp3 subunit [Physcomitrella patens subsp. patens] (GB:EDQ68665.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42468.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000); contains InterPro domain Actin-related protein 3 (InterPro:IPR015623) Range:  from: 4495025    to: 4498466    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g13190.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42467.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 4498878    to: 4501610    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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