Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <----------DOF2       <---------YAB1     <-----------GT1 --->ZmHOX2a(2)                                                            <------ZmHOX2a(1) ---ZmHOX2a(2)                                                            ----------->GT1 -----ARR14(3)                                 <----------DOF2   ---------->DOF2                 ---- ---->ARR14(3)                              <-----------GT1   --------->ANAC46                   <--- ---->ARR11(3)   ----------->GT1       ----------->GT1        --------->ANAC58                 ------ -----ARR11(3)  --------->DAG2      --------->DAG2            --------->ANAC58                 <----- ---->ARR10    ---------->DOF2     ---------->DOF2   <---------AtLEC2  ---------->DOF2 ---------->DOF2   tcttatattacttttgtaaaagtgaaatatgtgcgaataaagtgtttaactttgtgcatgttacacgaaaagaaaaaggatatatcccctaaaacagtca  4451900                                     <---------ICU4                                     --------->ATHB12                                     --------->ATHB51                             ----------->GT1                                     -------->ATHB1                        --------->ANAC58                                    --------->AHL20(1)                     --------->ANAC58                                    <---------AHL20(2)                     --------->ANAC46                                    <---------YAB1                    --------->YAB1                                    <---------ATHB51                --------->ANAC58          <---------YAB1    <---------ANAC58           <---------TOE2(3)   --------->AtLEC2 ----->ICU4     <----------ID1      --------->ICU4    <-----------GT1<---------ATHB12      <---------ANAC55(2) ------YAB1--------->YAB1 --------->ARR11(3)     <---------TOE2(2)  --------->ANAC58       --------->ANAC55(2) --->YAB1<---------ARR11(3) <---------ANAC46     <---------TOE1(2) --------->WOX13(1)    <-----------GT1 ----ICU4--------->ARR11(3) <---------ANAC58    ------>ZmHOX2a(1) --------->MYB46(3)<---------CCA1(2)   ttactgagaaatatcataagaacaaaaatttcttgaaaattattgcaatcctagattaacatttgtcaacaatcaacatgcaacttgtatattacatgtt  4452000                                            <---------AHL20(1)                                       --------->AHL20(1)                                       <---------AHL20(1)                                       --------->AHL20(2)                                  --------->AHL20(2)                                  <---------AHL20(2)                        --------->ANAC46    --------->AHL20(2)                      --------->ZAT6   <---------AHL20(2)                 --------->ANAC55(2)  <---------AHL20(2)                 <---------ANAC55(2)  --------->AHL20(2)              <---------YAB1                XXXXXXXXXXXXXXXXXXXX>MIR2939<---------AHL20(2)   <-----------GT1        ---------->DOF2           <---------YAB1        --------->AHL20(2)             --------->AHL20(2)   --------->TOE2(3)   ttaaaactaaattacgaatacataacactaaaccatataattttattttatttcaaactactaaaatttactatgtttaaaaaaaaaacttaaagacaat  4452100                                             <---------YAB1                                           --------->YAB1                          <---------YAB1--------->YAB1                                         <-----                        --------->YAB1 <---------YAB1                                        --------                      ------->TEIL  <---------AHL20(2)                                       <-------               <---------AHL20(2)   --------->AHL20(2)                                       --------              --------->AHL20(2)   <---------WOX13(1)           ----------->RAV1(1) ------>ZmHOX2a(2)              --------->YAB1     --------->ATHB12     --------------->AtSPL3       --------->At4g35610          <---------AHL20(2)  <---------ICU4 --------->ICU4    --------->MYB46(3)  <---------At4g35610          --------->AHL20(2)<---------AHL20(2)      <-----------GT1         ---------->DOF2  <-------         --------->AHL20(2)--------->YAB1 <---------YAB1     --------->ANAC46--------->DAG2 ---------   atttctatgaaattaataaaaatgtatcataatattgatttattatcatgtttatttcagtacaaaccacagataagaaaaagtgatcggcccattaaat  4452200                                                        --------->ANAC46                                                        --------->ANAC58                                                   --------->ZAT2                                                   --------->GLK1(1)                                                   --------->At4g35610                                                   <---------ZAT2    *TSS    ------------>CBF                            --------->LBD16     <----------DOF2 -------CBF                                    --------->ANAC46  ------>ZmHOX2a(2) ->AHL20(1)                                   <---------LBD16   <------ZmHOX2a(2)                 <-- --AHL20(1)                              <---------ANAC58      <---------ARR11(3)             ------- ->AHL20(2)      <---------At5g28300     <---------ANAC58      --------->ARR11(3)    <---------DEAR3(1) --AHL20(2)     <-----------GT1       <---------TOE2(3) --------->ANAC58    <<<<<<<<<TBF1 <---------MYB52(1) >AHL20(2)<---------YAB1         --------->ARR14(2)<---------At4g35610   <<<<<<<<<TBF1 <------NtERF2   tgatagcccaatatgattttacagtttatggcccatatttgtggtttgcccggagctcaagaaacgatctctttcttcttcttctcgtcgtcgtttgtca  4452300                                                                             <------ZmHOX2a(2)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)                                                               <---------------AtSPL8                                                               --------->MYB59 --------->TOE2(3)                        --------->At4g35610                    <---------TOE2(3)------>ZmHOX2a(1)                        <---------At4g35610        <----------DOF2 <-------TEIL--------->TOE1(3) --------DOF2   <<<<<<<<<TBF1                   <-----------GT1--------------->AtSPL3             --- --->ID1     <<<<<<<<<TBF1           ------>ZmHOX2a(1)         <---------------AtSPL3            <---   ctttagagctacttcttcttcttctctgctaagcctttcctctcgacttgatacttttctccagtaaggtacgtttccgatccttaatcgagctctagta  4452400                                                                        ------>ZmHOX2a(2)                                                                       --------->CCA1(2)                                                                       <------ZmHOX2a(2)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                                                                      <---------AGP1             --------->YAB1                                   <---------ANAC58  --------->ATHB12 --------->YAB1       <---------YAB1        <---------ANAC58 ------>ATHB12   <---------TOE2(3)<---------TOE1(3)       ------->TEIL--------->AGP1  <---------YAB1< ------YAB1  --------->TOE2(3)    <---------TOE2(3)      <---------CCA1(2)          --------->CCA1(2)   tcattgatttggctatgttaatgaagatgagggtttagggttcttatacagacaccaatgtatctcgtgctagatctgatttgaagttatgagagaaaaa  4452500                                                 <---------AHL20(2)                                                 <---------YAB1                                              <---------YAB1                                         --------->At4g35610                                         <---------At4g35610                                      <------ZmHOX2a(2)           --------->At4g35610       <---------ARR14(2)           <---------At4g35610       --------->ARR14(2)   <---------ANAC58     <---------WOX13(1)           <---------HSFB2a(2)     <---------ANAC58   --------->ATHB12               --------->HSFB2a(2)<---------REM1(1)                  <---------AHL20(2)  <---------YAB1               ==============HOX2a_HOX2a <---------At4g35610          <---------AHL20(2) ----------DOF2                ------>ZmHOX2a(1)<---------AHL20(2)         <---------MYB46(3) <------   ctctttgattgacatctgattttggtttatctccttctggatcagcttatttttattgtagcttctctgattttcgatgggtacttatattttttttttc  4452600                                                                                  --------->ARR14(2)                                                                            --------->ATHB12                                                                   <---------ANAC58                                                           --------->HSFB2a(2)    <---------ARR14(2)               <---------GLK1(2)                           <---------HSFB2a(2)<---------WOX13(1)             <---------YAB1            ------->TEIL    <---------PCF2      <---------ATHB12             --------->ICU4         <---------REM1(1) <------MYB46(1)--------->AtLEC2           --------->YAB1        --------->ICU4       <------MYB83 <---------ANAC58                 - -----GT1<-----------GT1       ---------->DOF2        <---------DEAR3(2)   <---------YAB1      ------   aatttgggatttttcatgattctgtagggtttgcaaagatgaagcttgatactagtgggttcgagacttccatgcctatgattggatttggctcgagcag  4452700              <----------DOF2    <---------ANAC58                        --------->LBD16 <----------DOF2    <---------ANAC58                       --------->TOE1(1)<---------DAG2  <---------YAB1        <---------ZAT18 --------->ANAC46----------->HVH21                  --------->ALFIN1 -------->CCA1(2)       ------->TEIL   -------->P---------->DOF2                           <---------ZAT6 ----->GT1  --------->At4g35610      ------>ZmHOX2a(2)----------->GT1         <---------YAB1   tgatatgcttgatgagctttcttctgtaccctcgtttgatctaccccgtactaaagaggtgactttttttgtttttgtttgtgattcgaagcagtgtgag  4452800  Previous    Next  AGI:  At1g13060.1    Description:  PBE1 (20S proteasome beta subunit E1); peptidase. Identical to Proteasome subunit beta type-5-A precursor (PBE1) [Arabidopsis Thaliana] (GB:O23717;GB:Q949V2); similar to 20S proteasome beta subunit E, putative [Arabidopsis thaliana] (TAIR:AT3G26340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46631.1); contains InterPro domain Proteasome, beta-type subunit, conserved site (InterPro:IPR016050); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) Range:  from: 4452269    to: 4454872    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version