Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------GLK1(1)                    --------->ARR11(3)              <---------HSFB2a(2)       <---------ANAC58       <---------ANAC55(1)       --------->ANAC55(2)       <---------ANAC55(2)       <---------ANAC58       <---------ANAC46      <-----------------------TaNAC69(2)      <-------TEIL  <---------ARR11(3)     --------->CCA1(2)    --------->ARR11(1)      ---------->ID1    <---------GLK1(2)--------->GLK1(1)                                         --------->ANAC58    --------->ARR14(2)  <---------ANAC58                             <---------TOE2(3)          <----    <---------ARR14(2)  <---------ANAC58     <-----------HVH21       <---------TOE1(3)   ----------->GT1 --------->RAV1(1)<---------TOE2(3)  ------>ZmHOX2a(1)     <------------CBF    --------->ANAC58 <----   ccaacagatacgtgttctctaagatttcttgtcttcttcctgctagtcgtcatttctcaccgattgaaattagggtttcacaagaaaaaatgggtattaa  4423200                          <---------ICU4                          --------->YAB1                         --------->ICU4                         <---------ATHB51                       --------->YAB1                    ----------->GT1                                         --------->ARR14(2)                    --------->ANAC58                                        <---------ARR14(2)                    --------->ANAC58  <------------CBF                    --------->LBD16                 <------NtERF2       --------->ATHB12                   <---------LBD16               --------->ANAC46     <---------YAB1                    --------->GLK1(2)           ---           <-----------GT1-------->HAHB4     <----------DOF2          <---------ARR14(2)          --- -----TOE1(3) <---------LBD16   <---------ANAC58                      --------->ARR14(2)       ------ -----TOE2(3)--------->ANAC46   <---------ANAC58               <-----------RAV1(2)            >>>>>>>   ggtttatatgtttttacgcggcaagtaataatgggcttatcattgggccttaagagcgagaagagccagaagaatccggttccgattttttagtcaaacc  4423300                             <------MYB46(1)                         <---------ARR14(2)                    --------->At4g35610                    <---------ZAT2                    <---------At4g35610             <---------AHL20(2)       <---------RAP2.6(3)   <------MYB83              <------ZmHOX2a(1)      --------->RAP2.6(2)--------->ARR14(2)       <-----------GT1                   --------->GLK1(2) ---------->DOF2    --------->ZAT2              <---------AHL20(2)                  --------->ARR11(3) --->MYB46(1)--------->AHL20(2)            <---------MYB52(1)                   --------->YAB1 --->MYB83  <---------AHL20(2)           ----------->GT1                     --------->YAB1 ----------->AGL3  <-----------RAV1(1)  <-------TEIL  ----------->GT1     --------->YAB1           -- >>>MYB80   --------->AHL20(2)<<<<<<<<<<MYB80 <---------YAB1   --------->MYB52(1)   <---------ARR11(3)   aaataaagccgaaattaaattctgctggatttggtttgaaaattcgttattttaacaggaaataaaaacggtctaataagaataaaaatctattcgaaaa  4423400                                                                                          <---------ARR11(3)                                                                                      --------->YAB1                                 <---------AHL20(2)                                   <---------ICU4                                <---------AHL20(2)                                    <--------HAHB4                                --------->AHL20(1)                                    -------->ATHB1                                <---------AHL20(1)                                   <---------ATHB12                                --------->ARR11(3)                                   --------->ICU4                                <---------ARR11(3)                                 --------->WOX13(1)                               --------->AHL20(2)                                <---------ATHB12                             --------->AHL20(2)                               --------->AHL20(2)                           --------->AHL20(2)                                 <---------AHL20(2)                       --------->AHL20(2)                                    --------->AHL20(2)                   --------->AHL20(2)                                     --------->AHL20(2)                   --------->AHL20(1)                                    --------->ARR11(3)                   <---------AHL20(2)   ---------->DOF2                  --------->AHL20(1)          <---------YAB1--------->AHL20(2)  <---------ZAT6               <---------AHL20(1)         --------->AHL20(2)<---------AHL20(2)    <---------YAB1       --------->AHL20(2) <---------ICU4 ------->YAB1 --------->AHL20(2)--------->AHL20(2)     <------ZmHOX2a(1) <---------ARR11(3)     -----   ataagaacaatttttataaaataaaataaaaaaatatatttagaaagtgttatcttaggaaaactattcgaaaaaaatatttaatcaatcattatctctg  4423500                                                                                                    <                   <---------DAG2                         <---------ATHB12                        <--                   <----------DOF2       <---------AHL20(2)                          <---------AHL20(1)                <-----------GT1    <-----------GT1       <------------CBF            <---------ARR11(3)              <-----------GT1 <---------AHL20(2)      ------------>CBF               --------->AHL20(1)     <XXXXXXXXXXXXXXXXXXXXMIR823  ----------->HVH21 <-----------GT1      <------------CBF    <-------    <---------AHL20(2)    --------->AHL20(2)      --------->ICU4       <---------AHL20(2)  <---------ANAC58   --------->AHL20(2)   --------->HSFB2a(2)    <---------YAB1          --------->AHL20(2)  <---------ANAC58 ->NtERF2<---------YAB1 <---------HSFB2a(2)<------------CBF          --------->TOE2(3)    -----------   cctgattttatatgattttcacttttctataaatatttgacatttcattgtaattatccaattgttcatcacattaattgtttacaaaatatttcttacc  4423600                                                      --------->ZAT14       --------->ARR11(3)                    <----------DOF2 <---------YAB1      ------>ZmHOX2a(2)   <---------MYB52(1) -----------TBP    --------->ARR11(3)  <---------ANAC58 --------DOF2      <---------ARR11(3)  <---------ANAC58    ----------->GT1 ----GT1        <---------KAN4(2)     *TSS  <---------ANAC58                                 -------- ---->AtSPL8--------->YAB1    ---------->ID1<---------ANAC58          <---------ANAC46   ------>ZmHOX2a(2)   ctttttatagataatgagaatgatctagttttgttgtaatttcgtttctttccttcttcactcgttaaattttcgtttaatcagacatcgatctcaaaag  4423700                                         =======================HOX2a_HOX2a                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                    <------NtERF2                                        ========================HOX2a_HOX2a                  --------                                        ===============================HOX2a_HOX2a           <-------                                       --------->ARR14(2)                                   <--------                                       --------->ARR14(3)                                   ------>NtERF2                                       <---------ARR14(2)                                  --------->ANAC46                                       <---------ARR11(3)                                  --------->ANAC58                                       --------->ARR11(3)                                  --------->ANAC58                                       <---------ARR14(3)            <---------ALFIN1    --------->ANAC58                                       <-----------ARR10             --------->AtMYB61   --------->ANAC58                                 ===============================HOX2a_HOX2a              --------->TGA1a                                 ------>ZmHOX2a(2)                <---------ALFIN1       --------->ANAC46                               --------->ARR11(3)               ------>ZmHOX2a(1)        <---------TGA1a                             <---------YAB1               --------->SPL7     <------ZmHOX2a(2)   ----                           --------->YAB1==============================HOX2a_HOX2a<---------GLK1(2)                         --------->ARR11(3)               <---------TOE1(2) --------->ARR14(2)-------                  <---------TOE2(3)    --------->AGP1    ===========================HOX2a_HOX2a <----                 --------->YAB1<---------ARR11(3)        ------>ZmHOX2a(1)  <---------ARR14(2)<------ -->DOF2    <---------YAB1<------ZmHOX2a(2)    <----------DOF2  ====================HOX2a_HOX2a------   ctctcatcttcaatctcattgagaatggatcatgatctcgagatcttccctttactctcctacgtcctccaccattccgatcccgcttctcacgcgccac  4423800                               --------->DOF5.7(2) ->ATERF1(1)                   <---------MYB52(1)      --------->ANAC55(2) --ABI4(2)                   --------->YAB1            <---------ANAC55(2) -ATERF1(1)                --------->ARR14(2)       ------>ZmHOX2a(1)                              -- ----->DEAR3(1)            <---------ARR14(2)    <---------ATHB12                               ----- -->DEAR3(1)               --------->GLK1(2)    ------>MYB83            <---------WOX13(1)      ----- --NtERF2               <---------ANAC58        ------>MYB46(1)       --------->ATHB12          ----- ---ALFIN1              <---------ANAC58      --------->MYB46(3)      <---------MYB46(3)     <------- >NtERF2     <---------At4g35610              --------->AtMYB61  ------>ZmHOX2a(1)       --------->ZAT14   cgtctctagcgattcagcaatctcttgcgaatcgttatccccttctcaccaatccttatgtaatctcctcgttgattgaatcaattcccagtacaatcac  4423900                                                                                  ---------->DOF2                                              --------->At4g35610      --------->CCA1(2)                                              <---------At4g35610      <------ZmHOX2a(2)         <---------ANAC58                  <---------MYB52(1)          --------->ARR14(1)         <---------ANAC58                 <----------DOF2             --------->ARR14(2)        ---------->ID1                    =====================================HOX2a_HOX2a        <-----------------AGL1            ------>ZmHOX2a(1)           <---------ARR11(3)     <----------DOF2                      ====================================HOX2a_HOX2a     <---------DAG2                     ------>ZmHOX2a(2)             <---------ARR14(2) <---------ARR14(2)                 ----------->HVH21                 --------->ARR11(3) --------->ARR14(2)               ----------->RAV1(2)                 --------->AGP1            <---- ------->DEAR3(1)              --------->bZIP60(2)                  ----------->ARR10       <-------- ---->ANAC58     ---------->ID1--------->ANAC58           <---------ZAT2        <------ZmHOX2a(2) ---->ANAC46<---------ARR14(2) --------->ANAC58           --------->ZAT2------>ZmHOX2a(2) <---------YAB1 ---->ANAC58--------->ARR14(2) ----------->HVH21          <---------At4g35610  <---------ARR11(3) --ATHB12<---------ANAC46    <---------ATERF1(1)       <---------At4g35610--------->LBD16 --------->ICU4   gcagacccttttcgtatttggctctcttgggccacgacctgatcctttagctgtctcttctgctcggtctaagatccgagagatcaaagagaatgattct  4424000             <---------ANAC46             <---------RAP2.6(2)            <---------LBD16          --------->ARR11(1)          <---------ARR14(2)                                            <---------GLK1(1)        ---------->TaMYB80                  <---------MYB46(3)          --------->CCA1(2)        ----------->ARR10                 <-------GAMYB                --------->ARR14(2)      <------NtERF2<---------TOE1(3)     <---------MYB46(3)            <---------ARR14(2)     --------->LBD16 <------ZmHOX2a(1)  <---------ANAC46              <------ZmHOX2a(1)   <---------LBD16 <---------TOE2(3)   ------>NtERF2          <-------TEIL ------DOF2 <-------TEIL            <---------At4g35610  <------ZmHOX2a(1)                         <- -GLK1(2)<---------HSFB2a(1)       --------->ANAC46<---------ZAT14  <---------TOE2(3)       ---------   ttatcgccggaagatgcggctaaggaagagcaggtttacgctgcggttgtgagtttagaggaagttcatgaaggatatgagaagcagttaagagatttgg  4424100  Previous    Next  AGI:  At1g12960.1    Description:  60S ribosomal protein L27A (RPL27aA). Identical to Putative 60S ribosomal protein L27a-1 (RPL27AA) [Arabidopsis Thaliana] (GB:Q9LPV3); similar to 60S ribosomal protein L27A (RPL27aC) [Arabidopsis thaliana] (TAIR:AT1G70600.1); similar to ribosomal large subunit structural protein [Brassica juncea] (GB:ABM30196.1); contains InterPro domain Ribosomal protein L15; (InterPro:IPR001196) Range:  from: 4422705    to: 4423153    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12970.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G26500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64249.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro:IPR003591) Range:  from: 4423638    to: 4425787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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