Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     xx                                                                                                 xxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                          --------->YAB1                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <---------ATHB12                                                                                    ------>MYB83 xxxx                                                                                    ------>MYB46(1)xx                                                                         <---------SPL7   --------->TOE2(3)                                                                         <---------ZAT14 <<<<<<<<<ARR2                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxx   --------->At4g35610                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---   <---------At4g35610           -------->P                >>>>>>>>>RAP2.2         <xxxxxxxxxxxxxxxxx ------>ANAC58           --------->ALFIN1                <---------ARR11(3) <xxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>ANAC58           <---------DEAR3(1)             <---------CCA1(2)--------->ZAT14 <<<<<<<<<ARR1 ------>TGA1a      ---------->DOF2 ------->GAMYB       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxx -ARR11(3)       <---------HSFB2a(2)                --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >ARR11(3)       --------->HSFB2a(2)                <---------AHL20(2) --------------->AtSPL8xxxxxxxx   aagtcagcctccaatacttctgaaagagcggtgctaaccctcttaatacaaaatttatatatctaaacaaaacaccgtactaaaccaaacaatcttagat  4416000           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ANAC58        --------->ABI4(2)        <---------MYB46(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------DEAR3(1)   <---------LBD16  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(s) xxxxxxxxx>smallRNA(s) xxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxx>smallRNA(i) xxxxx>smallRNA(s) xxxxxxxsmallRNA(se3) xxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->ANAC46       --------->ANAC46 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------ARR11(3)      --------->TOE2(3)          ------ ----TEIL<---------ANAC58              --------->AHL20(2)        ----------->RAV1(1)        --------- xxxxxsmallRNA(s2)         --------->YAB1  <---------CCA1(2)     <---------ALFIN1         <-------TEIL xxxxxxxxxxxxxxsmallRNA(le3)           <---------AHL20(2)       --------->ANAC46------->GAMYB <------ xxxxxxxxxxxxxx>smallRNA(le3) <-----------GT1 >>>>>>>>>RAP2.2 --------->ANAC46 --------->MYB46(3)   tcaatcgcggtgcttacaatctaacttagttataacaaaatttatatatctaaacgaaaactaaacaccacattaaactcaaccatcttagattcaatca  4416100                 <---------AHL20(1)                 <---------AHL20(2)                 --------->AHL20(2)             <---------AHL20(2)            <---------AHL20(2)                               -------->HAHB4            --------->AHL20(2)                               <--------ATHB1            <---------ARR11(3)                               --------->ATHB12        <---------AHL20(2)   <---------HSFB2a(2)            <---------YAB1       --------->AHL20(2)    --------->HSFC1(1)             --------->ICU4     <---------ARR11(3)      --------->HSFB2a(2)            <---------ATHB12                       -- --->YAB1   --------->ARR11(3)                         --------->ANAC55(2)                      ----- >WOX13(1)  --------->AHL20(1)    ----------->GT1  <----------DOF2                     --------->ZAT6 ---ATHB12  <---------AHL20(1)  ---------->DOF2   --------->TOE2(3)            <-----------GT1-------   aaaccaagatttaatatattttatttttcatctagaaagaaaaaccagaaaacctttatgtaatgattcaagtttttttttataccatcacactaaaaat  4416200                                         --------->ATHB12                                         <---------ICU4                                         -------->HAHB4                                         --------->YAB1                                        --------->ICU4                                        <---------YAB1                                    --------->AHL20(2)                               --------->ICU4                            --------->AHL20(2)                            <---------AHL20(2)                        <---------AHL20(2)                                                     ------ -------->DOF2          --------->AHL20(2)                                                <----------DOF2 ---->AHL20(2)        --------->YAB1<---------AHL20(2)                            <-----------HVH21 -->YAB1   --------->YAB1--------->AHL20(2)    --------->TOE2(3)           --------->AtLEC2  <-------   aaaaagatagcattcaaaatccaaaaataaataaatattaaaatgattacatcaacgcttcacaagaacataaatccatgaaaatgtcacagctttaaca  4416300                                               --------->TOE2(3)                                               --------->TOE1(3)                                     --------->ARR14(2)                                    ==========                                     --------->GLK1(2)                                     <------ZmHOX2a(2)                               --------->TOE2(2)                                          <---------ARR11(3)                        --------->TOE1(3) <---------ICU4                                 --------->YAB1                  --------->YAB1     <---------ARR14(2)                         --------->TOE1(3)   ------>ZmHOX2a(1)    --------->TOE2(3)------>ZmHOX2a(1)                      --------->TOE2(3) --->ZAT6 --------->AHL20(2)   --------->TOE1(2)------>ZmHOX2a(1)             ------->TEIL--------->ARR11(3) ----GT1  ----------->TBP     ----------->RAV1(2) ---------->DOF2    <---------GLK1(2)---------->DOF2   ctctccttctctataaatactcataacctcaaacctgagattcctcattccttaaacccctaaacctccaaaattctctgaaccttcacaaagatcacaa  4416400                                                  <---------ZAT2                                                  --------->ZAT2                                                <---------ALFIN1                                              --------->DEAR3(1)                                              ------->GAMYB                                              --------->RAP2.6(2)                                           <---------ALFIN1                                     --------->DEAR3(1)                                     <---------ALFIN1    <---------HSFB2a(1)                                     --------->AtMYB61   --------->HSFB2a(1)    <------NtERF2                                    --------->MYB46(3)   --------->HSFC1(2)    --------->LBD16                                  --------->AtMYB61     <---------TOE2(2)----------->HVH21                                 --------->MYB46(3)  --------->TOE1(1)   <---------SPL7                                 <---------MYB55(2) <---------LBD16    <---------MYB52(1)        <---                          --------->ZAT2--------->AtMYB61<---------MYB46(3)  <---------LBD16     ====                          --------->At4g35610--------->MYB46(3)       --------->LBD16   --------->ANAC58                         --------->GLK1(2)--------->MYB46(3)<-------TEIL--------->ALFIN1--------->ANAC58              ---------->DOF2  --------->ARR14(2)------->TEIL       <---------LBD16   ---------->DOF2   <---------AtMYB61 <------ZmHOX2a(1)----------->RAV1(1)<---------HSFC1(2)<---------------------WRI1 ===========================HOX2a_HOX2a <---------ALFIN1<---------TOE1(2)<---------MYB46(3)  --------   aaatggaggtcgaaggcaaaggaggagaagctggaaccaccaccacaaccgcacctcggaggttcgcacttccggtggacgcggagaacaaagcaacaac  4416500                                                                                             --------                                                                                             ------>NtERF2                                                                                            <--------                                                                                            ---------                                                                                          <---------ATERF1(1)                                    <----------DOF2                                      <---------ARR14(2)                           --------->TGA1a                                               --------->ARR14(2)                           <---------O2                                                 <---------At4g35610                           <---------TGA1a                                       <----------DOF2                           ====================bZIP_DOF             <---------At4g35610 --------->ZAT2 -------DOF2               ====================bZIP_DOF          <---------At4g35610    --------->At4g35610 ====================================bZIP_DOF                   <-----------RAV1(1)     <---------ZAT2 ->MYB46(3)                --------->O2   <---------CCA1(2)  <----------DOF2  <---------ALFIN1 <-----   tttccgactattctcagtcgctaaacctcacatgagagctttccatctctcatggtttcaattcttttgctgcttcgtctccactttcgcagctccgcct  4416600                                       ----------->RAV1(1)                                      --------->DEAR3(1)                                      --------->DREB2C(2)                                      --------->At1g77200                                      --------->DEAR4(1)                                     <------NtERF2                                   <---------ALFIN1                                 <-----------HVH21                                 ------>NtERF2 --------->ARR14(2)                                 <---------ATERF1(1)                                 --------->ABI4(1)                                --------->DREB2C(2)                                --------->ANAC46---------->DOF2                                --------->DEAR3(1)    --------->LBD16                               --------->MYB46(3) --------->ANAC58          <------NtERF2                        <-----------GT1<---------DDF1--------->RAP2.6(2)   ------>NtERF2                     --------->YAB1--------->DEAR3(1)--------->LBD16      <---------DEAR3(1)                     --------->TOE2(3)------->GAMYB <---------LBD16     --------->LBD16             -                     --------->TOE1(3)----------->HVH21                 <---------ATERF1(1)  <------- ------>ZmHOX2a(1) --------->ARR11(3)--------->MYB46(3)                 ------>NtERF2        <------- ->LBD16           --------->GLK1(2)<---------ATERF1(1)                --------->ANAC46     --------- -ALFIN1           <---------ARR11(3)--------->DEAR3(2)<------NtERF2   <---------DEAR3(1) --------->ARR14(2) >DEAR3(1)         <-----------ARR10------>NtERF2 --------->ANAC58    <---------LBD16     <---------ARR14(2) ----ALFIN1  --------->LBD16 <---------ALFIN1  <---------ARR14(2) <-----------HVH21      <---------CCA1(2)   ctcctccctgttatccgtgaaaatcttaacctcaccgccaccgacatcggaaacgccggaatagcctctgtctccggcgctgttttcgctcgtatcgtca  4416700                                                                    ------>NtERF2                                                                   --------->RAP2.3(2)                                                                   --------->RAP2.3(3)                                               ---------->ID1      <---------ANAC46                                        --------->DEAR3(1)         --------->DEAR3(1)                                      <---------ATERF1(1)         <------NtERF2                                     <---------ALFIN1             --------->DEAR4(2)                          <---------O2--------->LBD16             --------->RAP2.3(1)    --------->DAG2               <----------DOF2       --------->ANAC46            --------->LBD16        ---------->DOF2              ------>ZmHOX2a(2)      --------->DEAR3(1)          ------>NtERF2      <------NtERF2            <---------ARR11(3)      --------->ATERF1(1)         --------->ANAC46   --------->LBD16   --------->bZIP60(2)    ============================bZIP_DOF --------->MYB46(3)  ------>NtERF2   --------->ANAC58       --------->TGA1a------>NtERF2     <---------At4g35610    --------->LBD16   --------->ANAC58       --------->O2------>NtERF2        --------->ABI4(1)    ------>NtERF2   --------->ANAC46       --------->ANAC46   --------->WRKY12--------->PCF2     --------->ABI4(1)  --------->SPL7        <---------ALFIN1--------->RAP2.3(2)--------->At4g35610 --------->DEAR3(1) -------->ZAT18=====================bZIP_DOF ----------->HVH21<---------ATERF1(1)<---------LBD16    - ----HVH21  --------->ARR11(3)     <---------ATERF1(1) <---------ALFIN1       --------->MYB46(3)   <- ----TGA1<-------MYC3  <---------WRKY38(1) <----------DOF2--------->DEAR3(1) <---------At5g28300  --- >YAB1   ------->MYC3  <---------WRKY12--------->RAP2.3(1)<---------ALFIN1  <-----------GT1       <--   tgggcacggcatgtgatcttttcggtccacgtctagcctccgccgctttgacgctctccaccgctcccgccgtctatttcaccgccgggataaagtctcc  4416800                                                                                                    <                                                                                                 <---                                                                                                <----                                                                                             <-------                                                                                             <-------                              --------->ARR14(2)                                             --------                              <---------GLK1(2)                                              ========         --------->YAB1       <---------ARR14(2)<---------ANAC58       --------->At4g35610   --------        <---------YAB1      --------->LBD16     <---------ANAC58       <---------At4g35610   <-------  ----------->GT1         <---------LBD16    <----------DOF2    <---------HSFB2a(2)        <--------- ----->ZmHOX2a(2)  <-----------ARR10      <---------ALFIN1      --------->HSFB2a(2)      --------->MYB46(3) -----ZmHOX2a(2)   --------->GLK1(2)   --------->ANAC58        <---------LBD16         --------->ARR14(2) ------>ARR14(2)  <---------GLK1(2)    --------->ANAC46      <---------ARR14(2)     --------->HSFB2a(2) -------ARR14(2)----------->ARR10      --------->ANAC58      --------->ARR14(2)    <---------LBD16<--   gatcgggtttatcatggtgagattcttcgccggattctctctcgccactttcgtctcgactcagttctggatgagctccatgttctctggacccgtcgtg  4416900  Previous    Next  AGI:  At1g12940.1    Description:  ATNRT2.5 (NITRATE TRANSPORTER2.5); nitrate transmembrane transporter. similar to ATNRT2:1 (Arabidopsis thaliana high affinity nitrate transporter 2.1), nitrate transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G08090.1); similar to nitrate transporter [Populus tremula x Populus tremuloides] (GB:CAG26717.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66122.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 4416403    to: 4418588    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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