Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->HSFB2a(1)                                                                                      --------->HSFC1(2)                     <---------ARR11(3)                                          <-------TEIL                     --------->ARR11(3)                                         --------->CCA1(2)             --------->LBD16                                                    --------->ARR14(1)---      <------ZmHOX2a(1)                                                        --------->ARR11(1) --- ---------->RAV1(2) <---------CCA1(2)                            --------->At4g35610  <---------HSFB2a(1) >REM1(1)  <---------LBD16                  --------->ZAT18      <---------At4g35610  <---------HSFC1(2) --AtSPL8 --------->MYB52(1) <---------At4g35610             <----------DOF2   --------->ARR14(2) <-- ->AtSPL8<---------ALFIN1    --------->At4g35610          --------->GLK1(2)    <---------ARR14(2) ---   atacctgaggaacaccggagctatatctcttagcagcaagaagaagggcattgagaagagcatctttagctgtagattgaagattcgatgcttcgttctg  4405200                                                                                               <-----                                                                                              -------           <---------ZAT14                                                 ---------->DOF2   <-------           --------->ZAT14       --------->DAG2                          <---------YAB1      <-------         --------->ANAC46 <-------GAMYB                       --------->GLK1(2)             <--------       --------->ANAC46   ----------->GT1                     --------->ARR14(2)--------->ANAC58 ------>GLK1(2)          ----------->GT1                      <---------ARR14(2)--------->ANAC46 ------>ARR14(2)    --------->DAG2                           <---------GLK1(2)  --------->ANAC58   -- -------ARR14(2)   ---------->DOF2            <------ZmHOX2a(1)       --------->ICU4  <---------DAG2 ---->TEIL----------->RAV1(1)   ---------->DOF2   ----------->GT1   <---------At4g35610     <--------   aatctgaaaacacaacacagaaaaagagggttaaaaaagggtttttgaggagtcgaaaatagagaatctgagatgatgaaagacgaaacctttcggcgga  4405300                                                                             --------->At4g35610                                                                             --------->ZAT2                                                                         --------->ANAC58                                                                  --------->O2      <---------DEAR3(1)                                          --------->bZIP60(2)  --------->At4g35610     --------->At4g35610                                          <---------O2<-----------RAV1(2)     <---------At4g35610                                          --------->TGA1a      <---------ZAT2 -NtERF2                                                          <---------TGA1a<------ZmHOX2a(1) -->LBD16                                                   <---------------------WRI1 --------->ZAT2 --ANAC46<---------ANAC46                                   --------->ALFIN1----------->RAV1(1) --DEAR3(1)                ---------->DOF2          <------ZmHOX2a(1)    --------->ANAC58 -At4g35610 ----------->ARR10                   --------->ALFIN1 <-----------------------TaNAC69(2) ------->GLK1(2)    <---------AtMYB61 --------->MYB52(1)<---------ZAT14  --------->ANAC46 -LBD16 <------NtERF2      =================================================bZIP_DOF   <---------At4g35610   gaatttgagcggcgaagaattggaggtcgaaaagagaaacaatcggagaagtgaggagagaagtggagacgtcccaagcagcaggagtaagctggaattg  4405400                                           <---------YAB1                                         ----------->GT1                                         ------>ZmHOX2a(2)                                       <---------ARR11(3)                                       --------->ARR11(3)               --------->ANAC46        <---------ARR14(2)             --------->At4g35610       --------->ARR14(2)       <---------At4g35610             <---------At4g35610      <------ZmHOX2a(1)       <---------ANAC58        <---------MYB46(3)        <-------TEIL                <---------ANAC58      <---------MYB52(1)         --------->CCA1(2)         <---------WOX13(1) --------->ANAC58                --------->GLK1(2)--------->ANAC58      <---------DAG2         ------ --------->ANAC46               --------->ARR14(2)--------->ANAC58      <----------DOF2        ------ --------->ANAC58               <---------ARR14(2)--------->ANAC46 <---------At4g35610         ------   aacaagccattggttagcagcaactctattggaagattcaggatcgtgattcaagacatggattgcttctgctacttttctctgtaactccattctcact  4405500         ---------->ID1       <---------MYB46(3)                                            <<<<<<<<<TBF1       <-----------RAV1(1)                              <-----------GT1    <----------DOF2                                  <------------------------ANAC81                - <---------ARR11(3)                                 <---------AHL20(2)                       <------- --->ANAC46                                <---------ALFIN1       <<<<<<<<<TBF1             <-------- --->ANAC58 <---------ANAC58 <----------DOF2 --------->ANAC46  <<<<<<<<<TBF1            <---------AHL20(2) --->ANAC58 <---------ANAC58<------------------------ANAC81 <<<<<<<<<TBF1       <---------LBD16  <<<<   caatttcttttgttgcattccactctcttctctttctctcttcttccactctattttttttcttcttcttcttcttcgactcttcggaattttttttatt  4405600                                      --------->AHL20(2)                                      <---------AHL20(2)                                   <---------AHL20(1)                              --------->AHL20(2)                              <---------AHL20(2)                              --------->AHL20(1)                          --------->AHL20(1)                          --------->AHL20(2)              <---------ARR14(2)    <---------TOE2(3)     <---------AHL20(2)              --------->ARR14(2)   *TSS                   <---------AHL20(1)       --------->WOX13(1) -------->TOE2(3)        <---------AHL20(2)    --------->GLK1(2)            <----------DOF2 --AHL20(2)              --------->AHL20(2) <---------TOE2(3) <---------At4g35610  <---------ARR14(2) -AHL20(2)        ----------->GT1  --------->AHL20(1)<---------ATHB12       <---------DAG2         <- <<<<<<GT-3b    ---------->DOF2<---------AHL20(2)------------>CBF <----------DOF2  --------->ARR14(2)   tttcttaatgttttttgagaaagtaaaataaatttaatatttttttaagaatccaatcagtttctgctctttttcttcctttttggattcgatttcgata  4405700                                                     --------->DAG2                                                    ---------->DOF2                                               ------>ZmHOX2a(2)                                              --------->GLK1(1)         <---------AHL20(2)                   <------ZmHOX2a(2)         --------->AHL20(2)                   <---------GLK1(1)     <---------YAB1                          --------->ARR11(3)    <---------AHL20(1)                       --------->ARR14(2)    --------->AHL20(1)                       <---------ARR11(3)    --------->AHL20(2)                       <---------ARR14(2)          <<<<<<<<<MYB98         -----    <---------AHL20(2)                      <------ZmHOX2a(1)          <---------YAB1    --------->AHL20(2)   --------->AHL20(2)      <-------TEIL   <---------TOE2(3)            ----------->GT1   --------->YAB1 --------AHL20(2)          ------->TEIL ---------->DOF2     <----------DOF2--------->AHL20(2)   <----   attcattatattaaaaaaaaaaacttatgtacgttttttagataaaggatctctaaaagtgtctttaaaacttatgttaaaattttgaaaattataaact  4405800                                                 <-------GAMYB                                             <---------ZAT2                                        <---------DAG2                                             --              <---------GLK1(2)         <----------DOF2                                            --              <---------ARR11(3)     --------->ZAT6<---------MYB46(3)                        --------              --------->ARR11(3)   <-----------GT1<--------P <-------TEIL             <---------TOE2(3) ---------->AGL15               --------->YAB1  <---------MYB46(3)             <------MYB83 <-------- -----------AGL15        <---------AHL20(2)  <---------At4g35610               <------MYB46(1)     <-   aatatgagaaattatagattttcttattttaaaattataacacttttagctggttgtttttggttcataaaaactataagttggttttgatgttataata  4405900                                         --------->MYB52(1)                                         --------->YAB1                                        <---------AHL20(2)             <---------ARR14(2)         <---------ATHB51 ------->ZAT18                         --------->AHL20(1)          --------->TOE2(3)               <- ------->ZAT14                        --------->YAB1               --------->TOE1(3)             <--- ->YAB1      --------->ARR14(2)     --------->AHL20(2)           <---------TOE1(3)         --------->YAB1 -YAB1--------->ZAT14 <---------At5g28300<---------ICU4          <---------TOE2(3)    <---------ZAT14 --------ZAT14  <---------YAB1  --------->YAB1              <---------YAB1 --------->TOE2(3)     ----   gtccacagtgaagcatatatgattcacagtcgtttcataaaaataatggtttagttgatattatgtttacgttaaaacataaatagactacaatgctaat  4406000                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              --------->ICU4                            --------->CCA1(2)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------AHL20(2)           --------              ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------          ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->AHL20(2)   ----------->GT1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            ----------->GT1            ----------->GT1      <-----------GT1--------->CCA1(2)           <---------TOE2(3)                <xxxxxxxxxxxxxxxxsmallRNA(s) --------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ZAT6          ---------->DOF2xxxxx ------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->DAG2            <------ZmHOX2a(1) xxx ----->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------->DOF2          <---------TOE2(3)xxxxxx   taatgttataaccaaagaaagagatagaagaaatgagtgtgttattccattgagataaagtgttatttatatagaagtataaggaaagggtaaaacccta  4406100  Previous    Next  AGI:  At1g12930.1    Description:  importin-related. similar to transportin-SR-related [Arabidopsis thaliana] (TAIR:AT5G62600.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72131.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ69443.1); similar to importin, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94152.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Exportin-1/Importin-beta-like (InterPro:IPR013598) Range:  from: 4398373    to: 4405603    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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