Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->At4g35610   --------->YAB1  <---------YAB1 --------->ARR11(3) <---------ARR11(3)                                         <----------DOF2 -------->YAB1                                       <------ZmHOX2a(2)      >>>>>>>GRF7 ------->ICU4                                       <---------ARR11(3)   <-----------HVH21        <-- -------KAN4(2)                                     --------->ARR11(3)<---------ANAC58            <-- -->LBD16                          <---------ANAC55(2)   --------->ARR11(3)<-----------RAV1(2)    <-- --ANAC55(2)            --------->TOE1(2)    <---------ANAC46        ----------------->AGL1      <--- ->ANAC46   --------->GLK1(2) <---------GLK1(1)     <---------ARR14(2)<---------ANAC58           <--- -LBD16    <---------GLK1(2)  --------->GLK1(1)   ----------->ARR10  <-----------------AGL1     <----   aatgatcatcagcgattctccataaacgaaggaaatcacttgaagtagcgagaagatcaggtctttggcattccttgtcaggtatgaaaatggtcttcgt  4395900                                               --------->ATHB12                                         <---------GLK1(1)                                         --------->GLK1(1)                                         <------ZmHOX2a(2)                                        --------->ARR11(3)                                        ------->TEIL                                        <---------ARR14(2)                                        <-----------ARR10                                        --------->ARR14(2)                                        <---------AGP1                                        <---------ARR11(3)                                     --------->ANAC58                                     --------->ANAC58        ===============================HOX2a_HOX2a        <------ZmHOX2a(1)          --------->MYB52(1)      <---------TOE2(3)         ------>ZmHOX2a(2)                                   <---------ANAC46 <---------MYB46(3)           <---------ARR14(2)       <-------TEIL            --------->ANAC58 ----MYB46(1)                <------ZmHOX2a(1)<---------YAB1     --------->ZAT18  --------->ARR14(2) ----MYB83                   ===================HOX2a_HOX2a   --------->ZAT2   --------->ANAC58    <- -------MYB46(3)             ====================HOX2a_HOX2a  --------->At4g35610 <---------ARR14(2) ------AtMYB61             --------->MYB59------>ZmHOX2a(2)   <---------ZAT2 <---------ALFIN1<------- ------DEAR3(1)         ----------------------->TaNAC69(2)    <---------At4g35610<---------SPL7 <---- -----MYB52(1) ---------->DOF2--------->ARR14(2)--------------------->WRI1  <---------REM1(2)<-------   tggtggataaggatgctcaaaggagaggttaggatcggaacggatctcaccattggattcatcgagctgcacaatctcgacacggttcgggtattgctcg  4396000                                                                                         ------>ZmHOX2a(2)                                                                                        <---------GLK1(1)                                                                                        <<<<<<<<<GATA-2                                                                                        <<<<<<<<<GATA-3                                                                                        <<<<<<<<<GATA-1                                                                                        <<<<<<<<<GATA-4                                                  --------->ATHB12                      <------ZmHOX2a(2)                                        --------->ANAC58                               <---------AGP1                                        <---------HSFB2a(1)                            <---------ARR11(3)       <---------ZAT6 --------->HSFC1(2)--------->HSFB2a(1)       <---------bZIP60(2)  --------->ARR11(3) -----ZmHOX2a(1)      <---------HSFC1(2)--------->ANAC58  ----------->ARR10    <---------TOE1(2) --ANAC58    <---------ANAC58        <---------SPL7    <---------ANAC58        <---------TOE2(2)----- -----HSFB2a(2)     <---------ARR14(2) ------->TEIL    <---------ANAC46     <---------ANAC46--------- --ANAC58    <---------ANAC58       <---------MYB52(2) <---------ANAC58   --------------------->WRI1   aggaggctagtgatggcgagacgatacttcttatcgcgacgaacgctccaattcattgcgtagatgtgccatggcgcttcgtatgtatagatctctgatc  4396100                 <---------HSFB2a(1)                 --------->MYB46(3)                 --------->HSFC1(2)                 --------->HSFB2a(1)                 <---------HSFC1(2)      <---------At4g35610            <---------ZAT2   --------->At4g35610            <---------At4g35610   <---------At4g35610          <------ZmHOX2a(2)                                                  --  <-----------RAV1(1)          <---------ARR14(2)               --------->LBD16            <---------At4g35610 ->ZmHOX2a(2)  --------->ARR14(2)------>ZmHOX2a(2)             <---------ANAC58         ------>NtERF2 -->HVH21  --------->At4g35610 --------->ARR14(2)              <---------ANAC58        --------->DEAR3(1)   gcttctgctgctcatcggaaccatcttgaatcggatcgctgctcgttcccatcgtgaaatcgattccgagcaaaaaccctagaaaatcgcctccgcttct  4396200                                                            --------->ANAC58                                                     <---------TOE2(3)                                                  <---------WOX13(1)                                                --------->ATHB12                                                <---------ICU4                                                <--------ATHB1            <------ZmHOX2a(1)                      --------->KAN4(2)         -------->HAHB4          <---------TOE2(3)                     <---------KAN4(1)          --------->ATHB51        <---------TOE1(3)                     <---------GLK1(1)         <---------ATHB51   <---------------AGL15                     <----------TaMYB80        <---------YAB1     --------------->AGL15                    --------->ARR14(2)         <---------AHL20(2)<-----------------AGL1                    --------->ARR11(3)         --------->ICU4    <-----------------AG           --------->ANAC58                 <---------YAB1  --------->ANAC46           --------->ANAC58                --------->AHL20(2)   ------>NtERF2         ---------->DOF2     <---------ATHB12--------->YAB1 --------->ANAC58             *TSS ------->ZAT6       <---------ARR14(2)     <---------AHL20(2)  <---------ALFIN1   ----------->GT1   -   atcactcgctcaaaagcaaatggatattccagtcatccagtttattttaataattgacgaaaacgacaccgtttaaggaaaacagagtaacatggctaac  4396300                                                                            --------->ARR14(2)                                 <---------LBD16                            --------->ARR11(3)                                 <---------HSFB2a(2)                 ----------->GT1                          --------->YAB1                            ----------->GT1                          <--------ATHB1                           <---------ARR11(3)   <-----------GT1          <---------CCA1(2)      --------->HSFB2a(2)               --------->ARR11(3)<---------ICU4 <---------MYB52(1)      --------->ICU4                        ---------->DOF2  ------>ZmHOX2a(1) --------->DOF5.7(2)     <---------ATHB12                <----------ID1     <---------ARR14(2) -------->TOE2(3)    ------------>CBF      ----------->TBP----------->RAV1(1)  --------->TOE2(3)   atcgttatctccgtctcttcttcaccaatgattttctcggaaaatataaaaccagaagaacaacaaaaagatgtttaaaatcctcaaaaattacaacaca  4396400                    --------->WRKY18(1)                   <---------CCA1(2)              ---------->DOF2   <---------TOE2(3)--------->ANAC58                            --------          ---------->DOF2     <---------AHL20(2) --------->ANAC58              ---------->DOF2  -----     --------->MYB52(1)   <----------DOF2        --------->ANAC46    <----------DOF2     <----------DOF2   aattgtctaacagaaagaaagagtcaagctttttaatgttctatagaaaacaagaaacttaaatctctcttctttgttgataaaagaccatctttatgcc  4396500                                                           <---------HSFC1(2)                                                           --------->HSFB2a(1)                                                           <---------HSFB2a(1)                                                           --------->HSFC1(2)                                                          <---------ARR11(3)                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                          --------->GLK1(2)                                                          <-----------ARR10        <---------ALFIN1   --------->AtMYB61    <----------DOF2             <---------ARR11(3)   <-----------GT1        --------->MYB46(3) <---------ALFIN1               --------->ARR14(2) ->ANAC46           ------>ZmHOX2a(2)     <-----------GT1<---------GLK1(2)  <---------ARR14(2) ------>RAV1(1)   <---------AGP1   ---------->DOF2    --------->YAB1        --------->GLK1(2)      --   acattttccctcactgtatcgatctgaaaccatcaccaaaagttttcccactttaatcagaatcttcgtaaacttcagtatctgataactcatcaaatgt  4396600                               ------>MYB46(1)                             <---------ALFIN1                --------->ANAC58                                                                   <-                ----------->GT1------>MYB83                                                        --                <---------ANAC55(2)                                                                --                --------->ANAC55(2)                                                             <----              <---------DOF5.7(2)        --------->ARR14(2)                                     -----        --------->ZAT2       --------->AtMYB61                                --------->MYB52(2)<----        <---------ZAT2       --------->MYB46(3)             <-----------------AGL1              ----- ---->ZmHOX2a(1)--------->ANAC58      --------->AtMYB61  ----------->HVH21  <---------MYB52(1) ------   cctcatgtcaagctggtaacgtaacataccaccaatcccaccaaaacctctgcaaaactgtgacccttcttgggatttgttagtcacaaactcaagagtg  4396700  <---------RAP2.6(3) --------->RAP2.6(2) --------At4g35610                                                --------->LBD16 ---->NtERF2                                                     <---------ANAC46 ------->At4g35610                                           --------->ZAT2 -----ZAT14                                                  <---------ZAT2                  <------- ---->ZAT14                                           ------->TEIL------>NtERF2   --------->ATHB12 -----ZAT18                                      ----------->RAV1(2)   --------->MYB52(2)    <------- ---->ZAT18                                <---------At4g35610  <---------LBD16   --------->YAB1 --->ALFIN1                     <---------HSFB2a(2)------>ZmHOX2a(1) <---------MYB52(1)      <-------   cagccgaaacgtttgtactcatttgcaaaccattcgagtagaggcatcttctcctgtacttctagctccgcgttagtctctgaatcatggaagttgcttg  4396800  Previous    Next  AGI:  At1g12910.1    Description:  ATAN11 (ANTHOCYANIN11); nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G26640.1); similar to WD40 repeat protein [Ipomoea purpurea] (GB:BAE94397.1); similar to WD-repeat protein GhTTG2 [Gossypium hirsutum] (GB:AAM95643.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 4394895    to: 4396289    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12920.1    Description:  ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor. Identical to Eukaryotic peptide chain release factor subunit 1-2 (ERF1-2) [Arabidopsis Thaliana] (GB:Q9LPV8;GB:Q39098;GB:Q39223;GB:Q41987); similar to ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3), translation release factor [Arabidopsis thaliana] (TAIR:AT3G26618.1); similar to ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1), translation release factor [Arabidopsis thaliana] (TAIR:AT5G47880.1); similar to ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1), translation release factor [Arabidopsis thaliana] (TAIR:AT5G47880.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO64712.1); similar t Range:  from: 4396346    to: 4398191    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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