Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                            --------->CCA1(2)                           --------->ARR14(2)                           <---------AGP1                                                 --------->CCA1(2)       ------>NtERF2       --------->ARR11(3)       --------->ANAC46                     --------->ARR11(3)   --------->AtLEC2        --------->AGP1           --------->ANAC58                     <---------ARR11(3) ------>ANAC58             <---------ARR11(3)       --------->ANAC58             ----------->RAV1(1) ------>ANAC58    <---------ICU4                --------->ANAC46                 ==================== -----ICU4       <---------YAB1         <------NtERF2                          --------->ZAT18     <-   atgccatgcagccttgttcatcatggatagatctacaatggtggcattagacacaagaaacagctcttgagtttacaagattgcaccataagatatataa  4394000                                                                                       ------>ZmHOX2a(2)                                                                                       ==============                                                                                      --------->GLK1(1)                           --------->DAG2                                             <------ZmHOX2a(2)                          ---------->DOF2                                             <---------GLK1(1)                    <------MYB46(1)                                                   ===============                    <------MYB83                                                     --------->ARR14(3)                    ----------->GT1                                                  <---------AGP1                   --------->MYB55(2)                   --------->MYB52(1)           <---------ARR11(3)                --------->ALFIN1                       ----------->HVH21             <---------ARR14(2)                <---------ANAC46                     --------->At4g35610             --------->ARR14(2)  <------ZmHOX2a(1)<---------MYB46(3)  --------->ZAT14 ----------->TGA1              --------->ARR11(3) ==========RAV <------ZmHOX2a(1)<---------GLK1(1)    <---------At4g35610             <---------ARR14(3) ----------RAV1(2)--------->ALFIN1     <---------ZAT14<---------MYB52(2)   --------->At4g35610 ------   cacaggagcaatagagaggagtgggtgaaaaaggaactcactgcagaagtttggaaactgacgaaggaaacaaactcatcggaagaagatctcttggcaa  4394100             <---------HSFC1(2)             <---------HSFB2a(1)                                                           <---------ANAC46             --------->HSFC1(2)                           --------->TOE1(2)     --------->YAB1     --------->At4g35610 ------>ZmHOX2a(1)        ----------->GT1              ----------->GT1 =================HOX2a_HOX2a                    --------->DAG2                <---------YAB1-------- =================HOX2a_HOX2a                   ---------->DOF2             --------->ICU4 <---------ANAC58 ---->DOF2 <------ZmHOX2a(1)                --------->LBD16         --------->ICU4         <---------ANAC58   agggaagagcagaggagtttcgaagtcctgagaactcagaaaaaccctgaaaaagtaaaacatgagagtatttatgagatgatgataaaacttgtgtgaa  4394200                                                                                                <----               <-------GAMYB        --------->TOE1(3)                   --------->ANAC58        <----    --------->YAB1--------->MYB59  ===============================RAV   --------->ANAC58       ------   <---------ATHB12    --------->At4g35610                         --------->At4g35610         <----- --------->WOX13(1) <------ZmHOX2a(1)      --------->CCA1(2) ---------->DOF2      -------->P  ------- --->HVH21    <---------MYB46(3)   ----------->RAV1(2)----------->RAV1(1)         --------->MYB52(1)   gggcaatcagataatgtggttaggaagatgaaacaaaacctgaagagatggtttggccacagagaaagtagccgaagccatggctaccagagagagaagc  4394300                                                                                            <--------                                                                                    <---------HSFB2a(2)        <---------REM1(1)                                                           --------->HSFB2a(2) -----ANAC58                   ----------->GT1                                   --------->GLK1(2) -----ANAC58             <------NtERF2                                           <---------ARR14(2) --->HSFC1(2)   --------->At4g35610                                 ---------->DOF2<---------LBD16 ----HSFC1(2)--------->At4g35610         <------ZmHOX2a(1)        <------NtERF2 <---------GLK1(2) *TSS -->GLK1(2)  <---------At4g35610       ----------->GT1       --------->ALFIN1 ----------->ARR10   ---   ttgttgtatgatgtaagcagaagaggcagagagttgtaatataggaaaatatgaattgctgagttggaggcaaagaagatgagattctggatagctttgt  4394400               <---------AtMYB61             <---------MYB46(3)                  <---------YAB1              <---------TGA1a --------->ATHB12     <-----------GT1   --------->ANAC55(2)                  --------->O2 --DOF2<---------AtLEC2    ----------------------->TaNAC69(2)                <---------O2 ------>WOX13(1)     <-----------GT1 <---------REM1(2)                       --------->TGA1a---------   cattcatttgtatggttgtggttttatctctcttccctcttcacgttttctatgattcacacatatttttgattttctcacttgggcttcacaagtggat  4394500                                                                       --------->At4g35610                                                <----------DOF2      <-----------RAV1(2)                                        ----------->RAV1(1)         <---------At4g35610                                        ------>NtERF2----------->HVH21 <---------At4g35610                                       --------->ANAC46          --------->At4g35610                           ------>ZmHOX2a(2)   <---------ANAC58 <-----------RAV1(1)----------->HVH21- >ALFIN1                 --------->ARR11(3)    <---------ANAC58 =================RAV              ---   gggcttctccatcatgtggtcacatttgatctagtgactcgacgacatagcttttctgacatctctatgctgcagatgaaaatcactgacacattaagaa  4394600                                                                                           <---------DAG2                                                                                        ------->TEIL                            <---------AHL20(2)              ---------->DOF2  <---------ICU4<--------- ---------->HVH21           --------->AHL20(2)           --------->TOE2(3)  --------->ICU4<---------DAG2 ------>ALFIN1  ------>ZmHOX2a(1)                <----------DOF2---------->DOF2     --------------->AtSPL8   gtgtgacccttcttgctccttcttagccatttaaaagattacacattttgtctttgtaatctcaaagaaagatgtgtcattatgtctctgtacctttttg  4394700                                                               --------->ZAT6                                                           <---------MYB52(2)                                                           <---------MYB59                                                           <<<<<<<<<<AtMYB44                                                           <------------MYB.PH3(2)                                                           <---------MYB111(1)                              --------->ANAC58             <---------MYB46(2)                              --------->ANAC46        <---------REM1(1)               <---------HSFB2a(2)                    ----------->GT1               --------->HSFB2a(2)                    --------->ALFIN1 <---------LBD16  ---------->DOF2                   <---------ANAC46                  --------->AHL20(2) -DOF2     <----------DOF2    --------->ANAC58      ----------->GT1                  <---------ATHB12   ttttgcgcattgactttatagaaagctattccaagaaatacaataggtactgagaggtgtaactaactctagcagtccatagctctaatcaaatacaaaa  4394800                                                                                                    <                                                                                       --------->ARR11(3)        --------->YAB1     <---------ALFIN1                                   ---------->DOF2 =======       <---------ATHB12 <-------TEIL     --------->YAB1                      <---------ATHB12 <------ZmHOX2a(2)     ------>MYB46(1)--------------->AtSPL8                              --------->ANAC58      =======     ------>MYB83   --------------->AtSPL3           <---------GLK1(2)  --------->ANAC58     <-------   <---------MYB59  <---------TOE2(3)   <------ZmHOX2a(2)              --------->DAG2  --------->GLK1(2)   --------->TOE2(3)<---------------AtSPL8         --------->ICU4     ---------->DOF2  <---------ARR11(3)   ctaaacctaatcatccacaattgaggtacacacttcccatggatcatactgcaaagattgtgctacgagagaaaaagcaatgaagcaaaaatctagatca  4394900  Previous    Next  AGI:  At1g12900.1    Description:  GAPA-2; glyceraldehyde-3-phosphate dehydrogenase. similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78872.1); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) Range:  from: 4392448    to: 4394398    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12910.1    Description:  ATAN11 (ANTHOCYANIN11); nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G26640.1); similar to WD40 repeat protein [Ipomoea purpurea] (GB:BAE94397.1); similar to WD-repeat protein GhTTG2 [Gossypium hirsutum] (GB:AAM95643.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 4394895    to: 4396289    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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