Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------ANAC46               <---------LBD16               <---------ANAC58             ------>MYB46(1)            <-----------RAV1(1)                                         <    ------>ZmHOX2a(2)                ------>MYB46(1)                                                <    ========================HOX2a_HOX2a --------->ALFIN1                                            -   <------ZmHOX2a(2)                 ------>MYB83                                                  <-   --------->CCA1(2)                --------->MYB52(1)                                             --   =========================HOX2a_HOX2a<-------MYC3                                                --  <---------ARR14(2)               --------->TOE2(2)                                               <-  --------->AGP1                   --------->TOE1(2)                                           ------  <---------AGP1 --------->LBD16  --------->MYB46(3)                                          <------  --------->ARR14(2)              <---------MYB52(2)                                          -------  <---------ARR11(3)              --------->DEAR3(2)              <---------ANAC58            -------  --------->ARR11(3) <------ZmHOX2a(1) ------->MYC3               <---------ANAC58        ----------- --------->RVE1(1)<------NtERF2   <---------MYB55(2)<-----------GT1          <---------LBD16  <------ ------->DOF2------>MYB83    --------->ETT(1)<---------ANAC58     <---------ANAC46    ------->TEIL <-   taaagatctgaaacctagccggaggaagttgtcggaaccaacgtgttgctggattaactacatatatgtcttgtgtttttggggaatgaatgcagaaaat  4388700           <---------HSFB2a(2)           --------->HSFB2a(2)        <----------DOF2      --------->ZAT2      --------->At4g35610 ----------->HVH21 -----------HVH21 -----------TGA1 -------->LBD16 --------ANAC55(2) ------->ANAC46 ------->ANAC55(2) --------ANAC58 --->KAN4(2) ---HSFB2a(1)                          --------->LBD16                     --------->MYB52(1) -->HSFB2a(1)                        <---------LBD16            ----------->GT1 -->HSFC1(2)                 --------->ATHB12                   <------ZmHOX2a(1) >GT1 <---------At4g35610   --------->ICU4                     ----------->GT1 ---HSFC1(2) <---------At4g35610   <---------ARR14(2)     --------->At4g35610        ---------->DOF2 --------ANAC58  <---------ANAC46  --------->ARR14(2)---------->DOF2     <---------MYB52(2)       ---   tccgtcacagctttcagaagcgtagatgggatgatggaatccgcgagggaaattgaaaagagcagaggataaaaaactaactgattccaaagagatagtc  4388800                                               <----------DOF2                                         --------->YAB1                                         <---------ICU4                                        <---------YAB1                                       --------->ARR11(3)                                       <---------ARR11(3)            ------>ZmHOX2a(2)                                      --------->YAB1             ----------->HVH21                                     --------->ICU4           ------->MYC3                                     <---------YAB1           <-------MYC3 --->ZmHOX2a(1)                    --------->YAB1         ------>ZmHOX2a(2)   ctaaaactaatctctatgtctggattccatttttcagtgatgatcatgacttttggatgatccacatgtgatcgctcggctattttcaagtgcctctgtg  4388900                                                                        --------->HSFC1(2)                                                                        <---------HSFC1(2)                                                                    --------->LBD16                                                                  <---------LBD16                                                               --------->WRKY38(1)           --------                                                               --------->WRKY12              --------                                                               --------->WRKY45     --------->GLK1(1)                                                               ----------->HVH21    <---------GLK1(1)                       ------>ZmHOX2a(2)                     <----------DOF2       --------->ARR11(3)                     <---------ARR14(2)                <---------ICU4<---------MYB52(1)      --------                     --------->ARR14(2)        <---------CCA1(2)<---------WRKY18(1)<---------ARR11(3)   agaaatagcaagactcgagcgtcgatctccattgttttgagagagacttaaatctcattagggctttgaccggaagtttcaagaagatttcttctacgac  4389000                        <--------HAHB4                               <---------YAB1                        -------->ATHB1                             --------->YAB1               <---------YAB1                                     <---------YAB1             --------->YAB1                                     --------->YAB1            <---------YAB1                                     <---------YAB1            --------->ICU4            --------->ARR14(2)       --------->ICU4          <---------ICU4--------->ATHB12                    <---------YAB1          -------->HAHB4<---------ICU4------->TEIL          --------->ICU4           <----------DOF2          --------->YAB1--------->YAB1<---------ARR14(2)  --------->YAB1             <---------DAG2    ----------->GT1  --------->WOX13(1)                  --------->ICU4             <---------ANAC58 ->ANAC46--------->ICU4<---------ATHB12       <----------DOF2--------->YAB1         <---------ANAC58 ->ANAC58<---------YAB1--------->ICU4<---------CCA1(2)   <---------YAB1         <---------ANAC58   <- ->ANAC58<---------ATHB12        <---------ANAC46 <----------DOF2 --------->ICU4<---------ANAC58  ---   atcgtctggtaatgatgatgatgcaatcattagcttcttgtatcttctctttctttgtgatgatgatgatgatgatacaatcgcttgcttttcttcatcc  4389100                                                                                                  <--                                                                                                 ----                                                                                                <----                                                                                                <----                                                                                            ---------                                                                                          <---------WOX13(1)              <<<<<<<<<TBF1                                                              <-----------          <-----------GT1                        <-----------TBP                        <------ZmHOX2a(1) <---------YAB1           --------->CCA1(2)    <----------DOF2                        <---------TOE2(3) --------WRKY18(1)   <------------CBF        ---------->ID1                           <---------TOE1(3) -------->HVH21    <---------YAB1  <------------CBF      --------->ANAC46          <---------MYB52(1)   atgaccattgtttttcttcttcttattgatacgagtgaattggttttgtctttttatacacacacttatctccaaattctactctgttaaggattgataa  4389200                                                         --------->AHL20(2)                                                        --------->YAB1        --------->ARR14(2)                            --------->AHL20(2)    <---------LBD16                             <---------AHL20(2)             ------------>CBF ----ZmHOX2a(1)                                 --------->AHL20(2)  ----------->GT1 ----->ICU4<---------YAB1                   <---------YAB1         ----------->GT1 -----TOE1(3)   --------->DAG2     --------->ANAC46   <---------AHL20(2)     --------->ANAC58 -----TOE2(3)  ---------->DOF2   ----------->RAV1(1) --------->AHL20(2)      --------->ANAC58      -- >YAB1  <---------ARR14(2)  --------->YAB1 <---------TOE2(3)     ---------->DOF2              <------ZmHOX2a(1) -CBF  <-------GAMYB       <---------YAB1<---------AHL20(2)--------->YAB1  ---------->DOF2  <--------   ggattagccggttatgaaaaaggaagtttatcatcccacaaaatttatgtttaaattaaaataatagaaaaggaaataaaagccaatttcgactaaggaa  4389300                                                                                        ------------>CBF                                                                             --------->ARR14(1)                          <---------AHL20(2)                                 --------->CCA1(2)                          --------->AHL20(2)                                --------->ARR11(3)                         --------->AHL20(1)                                 <---------ARR11(3)      -                         <---------AHL20(1)                                 --------->ARR14(2)    <--                         --------->AHL20(2)                                 --------->ARR11(1)   <---     <-------TEIL        <---------AHL20(2)                  ----------->GT1<---------ARR14(2)  ----- --------->GT1      ------------>CBF         <---------WOX13(1)   --------->AHL20(2) --------->MYB46(3) -TOE2(3) <---------AHL20(2)  <---------AHL20(2)             <----------ID1 <---------GLK1(2)  <-----   atggaaatacatttttttcagaaacaatttatttattctctaatttgagtgattttagcaaaaacgaaaaaaatacaagatttgctaacaaacaattctg  4389400                       ------>MYB83                       ----------->RAV1(1) ---------->GT1        ------>MYB46(1) -------WOX13(1)     <---------MYB59 ---------CBF        --------->MYB46(3)                                                           --- ---->ATHB12        --------->ANAC46   ---------->DOF2                                     --------->At4g35610 ----YAB1          ------------------------>ANAC81                   ------->TEIL          <---------At4g35610   attggctaaaactaaaaccaagacccaacaaaaaaaaaaaaaaaagacactagaaacgaattgaaagtttgaacctatatgaattcggttttcagcagtc  4389500         --------->ANAC55(1)         --------->O2         <---------ANAC55(2)         --------->ANAC55(2)         --------->ANAC58         --------->TGA1a         --------->ANAC46         <---------O2                           --------->ARR11(3) --------->ARR14(2)         --------->ANAC58             --------->YAB1               <---------ARR14(2)     --------->ICU4         <---------TGA1a              --------->ATHB51   --------->ZAT14                --------->YAB1 -------->GT1                      --------->WOX13(1)    <---------ZAT14             ----------->GT1   ttgtttaaaacacgtctcaagataagttttatagaatcaattatcgaatagttcttctctatagtggagaatactcgtgagataaaacagtaataagtca  4389600  Previous    Next  AGI:  At1g12870.1    Description:  S locus F-box-related / SLF-related. Identical to Putative F-box/Kelch-repeat protein At1g12870 [Arabidopsis Thaliana] (GB:Q9LPW2); similar to basic helix-loop-helix (bHLH) family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT1G12860.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 4387127    to: 4389108    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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