Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                         --------->ANAC55(2)                                                                                         --------->bZIP60(1)                                                                                         <---------bZIP60(1)                                                                                         --------->ANAC58                                                                      <---------ZAT2     --------->ANAC58                                                                      <---------At4g35610--------->ANAC46                <<<<<<<<<TBF1                                         --------->ZAT2  <---------ARR14(2)          <<<<<<<<<TBF1                                               --------->At4g35610<---------ANAC55(2)       <<<<<<<<<TBF1     ------>ZmHOX2a(1)                      ------>ZmHOX2a(1)     --------->ARR14(2) ------->MYB46(3)  <<<<<<<<<TBF1     ------>ZmHOX2a(1)         <---------ALFIN1 --------->DEAR3(1) ----ATHB12  <<<<<<<<<TBF1  ---------->ID1             ------>ZmHOX2a(1)   ----------->RAV1(1)   aacaacttcttcttcttcttcttcttcctcgtcgtcttcctcttcatcttcttcatcctcttgctcctcttcagctccaacatcgccgattacgccactc  4374800                                                       <---------DEAR3(1)            <---------ALFIN1              <----------DOF2                         ------>ZmHOX2a(1)   <-----------------AGL1         <---------At4g35610                      --------->ARR14(2)    --------->GLK1(2)         <---------ZAT2                <---------At4g35610             <---------GLK1(2)         --------->At4g35610    <---------YAB1<---------ATHB12         --------->ARR14(2)     <-----------HVH21          <---------ATHB12  <---------ARR14(2)   <---------ARR14(2)    <------- -ALFIN1 --------->ZAT2 ---------->DOF2--------->At4g35610       <---------GLK1(1)  <---------ZAT18 <   tcaacctcttcagctgctttctccgataaaaccgatgattctgctccaatcgtttcctcggtggaagaattcagattctcgatttggccacttccattag  4374900                                                                                                   <-                                                                                                <----                                                                                             ========                                                                                             ------>ZmHOX2a(2)                                                                                            ---------                                                                          ------>ZmHOX2a(1) =========                                                                          ==========================HOX2a_HOX2a                                                                          =========================HOX2a_HOX2a                                       <------ZmHOX2a(1)        <-----------GT1             ---------                                  <---------ATHB12             ---------->ID1               <------ZmHOX2a(2)                            --------->GLK1(1)              <---------ANAC58                --------->ARR14(2)                       --------->At4g35610      --------->At4g35610     ----------->RAV1(2)--------->AGP1 --MYB52(1)            <---------At4g35610      ----------->RAV1(2)    <---------YAB1      <---------ARR14(2) -----------GT1    --------->GLK1(2) <---------TOE2(3)     <---------ANAC58           --------->MYB52(1)   tttctccgtctttggactcagaatcagcagaattcaatgaaggattaagcttctgagccttgtttgtcacattatcctggtcttgacaaaacagatccga  4375000                         ------>ZmHOX2a(1)                     --------->GLK1(2)            --------->ARR14(2)             --------->LBD16           <------ZmHOX2a(1)               ------>NtERF2          --------->ANAC58                --------->RAP2.6(2)    <-----------HVH21<---------ARR14(2)   ------->GAMYB    <----------DOF2  --------->ARR14(2)   --------->ANAC58 ----------GT1     --------->HSFC1(2)     --------->ANAC58 -----GLK1(2)      --------->HSFB2a(1)    --------->ANAC46 =================HOX2a_HOX2a            --------->MYB46(3) >ARR14(1)--------->ANAC58             --------->ARR14(2)                                       ----- =================HOX2a_HOX2a         --------->MYB46(3) --------->WOX13(1)                    <----- >CCA1(2) --------->ANAC46    <---------GLK1(2)       ------->TEIL   <---------ZAT14    <<<<<<<<<<MYB80   ttttcgcttcacaggaaacgaagaatcctgttgattctcaacatccgccatagatgaatcaatcttcttacttcagagactcgcgattttggtttgagga  4375100                                                                      <-----------TBP               <                              --------->YAB1                        *TSS           <---------At5g28300        <---------ZAT6 --------->At4g35610                  --------->TOE1(3)     <-----------GT1<--- ---->SPL7             <---------At4g35610                 --------->ZAT6       <----------DOF2  <--- -ZmHOX2a(1)     <----------DOF2     <<<<<<<<<TAC1       <-----------GT1     ----------->GT1 <-------   cgacgattcagagttagggctttgaagctgaatcaaaacactcgagccaatttagtttgtaaccctagaagtttttgtagggttttaccgtctctgtttt  4375200          ------>ZmHOX2a(2)         <---------GLK1(1)         --------->GLK1(1)        <---------ARR11(3)                                 <---------AHL20(1)        --------->ARR11(3)                                 --------->AHL20(1)        <---------AGP1                          ------>MYB46(1)                              <-------       <---------CCA1(2)                        ------>MYB83                                <-------- <---------AHL20(2)                             --------->ARR14(2)                       --------->MYB46(3) ---------YAB1                                  <---------ARR14(2)                     --------->MYB52(1) ------AHL20(2)                               <---------MYB59    <------MYB83        <---------MYB59 ------YAB1     <-----------------AGL1       --------->ANAC55(2) <------MYB46(1)  --------->ANAC58 --MYB52(1)   --------->ZAT14              <-----------GT1 <---------ARR11(3)     --------->ANAC58   ttattatttggatctctgaacacatttggcccagtattagcccatttacctatcttctcaaaatatttggttcttaacaaattcaagcctaaccattagt  4375300              --------------->AtSPL8    <---------AHL20(2)   <---------AHL20(2)                                     --------->MYB46(3)   --------->AHL20(2)                          <---------ARR11(3)       <---------AHL20(2)  --------->YAB1              --------->MYB52(1)         <-----------------AGL1                  <--- --ICU4       --------------->AtSPL3           --------->ARR11(3)       --------->AHL20(2)      ----- -MYB52(1)    ------>ZmHOX2a(2)  --------->LBD16<------ZmHOX2a(2)      --------->YAB1  <---------ZAT14   acaattttaattttgatctgtacattttcaaaaaccggactcgaaccaagatcaaattcaacaattgtggcaattttaatggtcgagtctccagtgtgta  4375400                        <---------ARR14(2)                        --------->ARR14(2)                        <---------ARR11(3)                        --------->ARR11(3)                    <------NtERF2                   --------->LBD16                   <---------LBD16                   ------>NtERF2                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58                  <---------LBD16               --------->ALFIN1              ------->MYC2              <-------MYC2              <-------MYC3              ------->MYC3              <-------PIF5                                                            --------->AHL20(2)              ------->MYC4                                                            --------->YAB1              ------->PIF5                                                        <---------YAB1             <---------HSFB2a(1)                                                  <---------AHL20(2)             <---------ANAC58                             <---------MYB52(1)      --------->AHL20(2)             --------->HSFB2a(1)                         <---------MYB52(1) <------MYB46(1)        --             <---------ANAC58                      <---------SPL7   <-----------GT1   <---------AHL20(2)            ------------>OsbHLH66                --------------->AtSPL3    <---------TOE1(2)    ----- --------RAV1(1) <---------LBD16     ------------>CBF--------->MYB52(1)    <---------TOE2(2)   ------ -->TEIL<------ZmHOX2a(1)     <-----------GT1--------->ZAT14  ---------->ID1<------MYB83 <-----------GT1   tgtggcagtaggagaacgtgccgggggatattaaaccggctcaatgctacagtcgtaccggtttgtttttttactcgttggtatataattaaaaccggtt  4375500                                                                                                  <--                                                                                                  <--                                                                                                  xxx                                          <---------ARR14(2)                                      <--                                      <-------TEIL                                               <---                                  <---------------AtSPL3                                         ----                                  --------------->AtSPL3                                         <---                                  <---------------AtSPL8                                       <-----                               <---------WOX13(1)                                         --------->CCA1(2)                             --------->ATHB12                                            <---------ARR11(3)                          --------->CCA1(2)                                              --------->ARR11(3)                         --------->ARR11(3)                                           --------->HSFB2a(2)                         <---------ARR14(2)                                           <---------HSFB2a(2)     ----------->HVH21   --------->ARR14(2) <-------TEIL                       <---------ATHB12<----- ---------->CBF          <---------ARR11(3)<------ZmHOX2a(2)               <------ZmHOX2a(2)   <----- ---->GLK1(1) <------NtERF2 <---------YAB1--------->ARR14(2)              <---------ARR11(3)  <------ --->ARR14(2)*TSS      ----------->ARR10  --------->AGP1                  --------->ARR11(3)  -------   atccaatttgacaggcagagagaagaagatttgattgaagtacagatccatcggagaagaagacagagagattgaagatcaatgacttcgagatattggg  4375600 -------MYB46(3) ----MYB46(1)                                                    <---------ICU4 xxxxxxxxxxxxxxxxx>smallRNA(si3)                          ------>ZmHOX2a(2) ----MYB83                                               <------ZmHOX2a(2) ------AtMYB61                                           --------->GLK1(1) ----->ALFIN1                                           <---------ARR14(2) ------DEAR3(1)                                         <---------AGP1 <----------DOF2 ----ANAC58                                             --------->ARR14(2) ----ANAC46                                             <---------ARR14(3)                        <-- ----ANAC58              <----------DOF2                --------->ARR11(3)                    <------ ---MYB46(3)           <---------At4g35610              <---------ARR11(3)                <---------- -->MYB55(2)  ---------->DOF2   <---------MYB52(1)     <---------CCA1(2)                 <---------ANAC46   tggtgtctcttccagtgaaagactctgcttcttcgttatggaatcgattacaagagcagatctctaagcattcctttgatactccagtttatcgggtact  4375700  Previous    Next  AGI:  At1g12830.1    Description:  unknown protein Range:  from: 4374248    to: 4375168    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12840.1    Description:  DET3 (DE-ETIOLATED 3). Identical to Vacuolar proton pump subunit C (VATC) [Arabidopsis Thaliana] (GB:Q9SDS7); similar to vacuolar H+-ATPase subunit C [Gossypium hirsutum] (GB:ABH07428.1); contains InterPro domain ATPase, V1 complex, subunit C; (InterPro:IPR004907) Range:  from: 4375513    to: 4378512    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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