Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ZAT6                                                          --------->ZAT14                                                          <---------ZAT14                                                    --------->CCA1(2)                                     <---------ANAC46    ----------->RAV1(1)                                    <-------TEIL   --------->AGP1                                 <---------HSFB2a(1)<------ZmHOX2a(2)                                 --------->HSFC1(2)<---------ARR11(3)                                 <---------HSFC1(2)--------->ARR11(3)                              ---------->DOF2      <---------ARR14(2)                          <---------ZAT14          --------->ARR14(2)            <---------ATERF1(1)                          --------->ZAT14         --------->GLK1(1)   <-------TEIL                 <-                   <---------At4g35610           ----------->ARR10<---------TOE1(2)                -- <------ZmHOX2a(1) --------->At4g35610    --------->PCF5--------->ANAC46        <---------DEAR3(1)---   agaggaattgacttcaagcttagctcagtgaagaaagcttcgtggtccagtgagatccacaacactaccaggttcgaaatcggaggctcacaaaatggag  4370900                                                                                             ------>ZmHOX2a(1)                                                                                             --------                                      <---------ARR14(2)                                   ------>ZmHOX2a(2)                                      --------->ARR14(2)                                  <------ZmHOX2a(2)                               --------->TOE1(3)                                         <---------ARR14(2)                            --------->ARR14(2)                                           <---------ARR11(3)              --------->ANAC58----------->RAV1(2)                                        --------->ARR11(3)              --------->ANAC58==========================RAV                              --------->AGP1         --------->At4g35610<---------ARR14(2) ---------->DOF2                           --------->ARR14(2) --------HSFC1(2)       --------->ANAC46    ----------->RAV1(1)  <-----------GT1         <---------GLK1(2) ------->HSFC1(2)  --------->ARR14(2) --------->GLK1(2)        --------->AHL20(2)   ----------->RAV1(1) ------>GLK1(2)    <---------ARR14(2)<---------GLK1(2)   <-------TEIL               --------->MYB52(1)   aagcttagaagagctcaagaaaatccaccgaaacctgaagaatctgcaacaaagcgagattcaaattatacaaactaatttagaaacaacagatcctgaa  4371000                                      --------->ANAC58                                      --------->ANAC46                                 ------>ZmHOX2a(2)         <---------HSFB2a(2)                                --------->CCA1(2)          --------->HSFB2a(2)                                <------ZmHOX2a(2)          --------->HSFC1(1)                               --------->AGP1             ------>ZmHOX2a(2)                               <---------ARR14(2)       <---------ARR14(2)                               --------->ARR14(2)       <---------AGP1                               --------->ARR11(3)       <---------ARR11(3)                               <---------ARR11(3)       --------->ARR14(2)                          -                               <---------AGP1       ----------------->AGL2                ------->TEIL                              <---------CCA1(2)    --------->At4g35610  <---------HSFB2a(2)         -                           <-------TEIL   ----------->GT1<------ZmHOX2a(2) --------->ARR11(3)       <                          --------->CCA1(2) --------->AHL20(2)---------->DOF2     <---------At4g35610                       <---------YAB1 --------->ANAC58  --------->AGP1  --------->HSFB2a(2)<---------At4g35610 ->LBD16               <---------TOE2(3)---------->DOF2 --------->ARR11(3) <---------ARR11(3)       <   actcgataaactaaacacagagattaagattcagatctacaagaaagtaaatgagctagatctagaaagagtttcgagaccttgagcttatgaagctact  4371100                ------>MYB46(1)                ------>MYB83              <---------MYB59         <---------DEAR3(2)       <------NtERF2                                         --------->GLK1(2)                      <     <---------DEAR3(1)                                      <---------ARR14(2)                     -  ------>ZmHOX2a(2)                                          --------->ARR14(2)                   --- <------ZmHOX2a(2)                                           ------->TEIL                         <-- -------->ARR14(2)                                        <---------YAB1                         <--- -------->ARR11(3)         --------->ATHB12             --------->YAB1              --------->At4g35610 ---------ARR11(3)        <---------YAB1               --------->ICU4      <---------LBD16       ---- ---------ARR14(2)      <---------At4g35610   --------->TOE1(2)  ----------->GT1    <---------At4g35610   aagatcgtcgtcggaaccaaactcgctgatgattcgattgaagaaaaacgttggaaaatgatgaatctggataaaactctggagttagcttcaagtccaa  4371200                                                            --------->ANAC46                                                            --------->ANAC58                                                            --------->ANAC58                                                        --------->ANAC46                                                        --------->ANAC58                                                        --------->ANAC58 ---------YAB1    --------->CCA1(2)                     --------->ANAC55(2)                         < -------->ICU4   <---------ARR14(2)                     --------->ANAC55(1)                *TSS  ---- ------>YAB1     --------->ARR11(1)                     <---------ANAC55(2)                ---------- -------ICU4     --------->ARR11(3)                  <------ZmHOX2a(2)      <---------ARR14(2)   <--- ------ATHB12    --------->ARR14(2)                 <---------ARR11(3)      --------->ARR14(2)  <---- ----->ICU4<---------YAB1                           --------->ARR11(3)      <---------GLK1(2)   -----   tgatgatgagatgatcaaagatttggatgagtgagagagagaagagaagagagagatcacgcaagccaaaaaaaaccagaaactctgtaatggaacaatt  4371300                                                                     <-------GAMYB                                                                    --------->ALFIN1                           --------->WRKY12                       <------MYB83 ------>ZmHOX2a(2)                           ----------->HVH21                      <---------ANAC46             --------->GLK1(2)                                    <---------ANAC58 --------->YAB1          <---------ZAT2                           <------MYB46(1)--------->MYB52(1) ---------ATHB12         <---------At4g35610                      <---------ANAC58 ----->AHL20(2)          --------->At4g35610                     --------->MYB55(2)     <------ZmHOX2a(1) -->CBF<------ZmHOX2a(1) --------->ZAT2                          <---------MYB46(3) ------->GAMYB ------AHL20(2)         ------>MYB46(1)  -------->P    ---------->DOF2  <---------MYB46(3)    ------- -----AHL20(2)          ------>MYB83    --------->MYB52(1) <---------ANAC58    --------->MYB46(3) ---->AHL20(2)  <----------DOF2       <---------MYB52(2)   <---------ANAC58    ================HOX2a_HOX2a   taatcaagaggagagaagctttaacctagctgaccaaaaaactaaccatggttaagttaaagcttgttgggtgttggatgatccaacggaggagaatggt  4371400                                                                         <---------ALFIN1                                                                        --------->MYB46(3)                                                                    <---------ANAC58                                                               <-----------RAV1(1)                                                              ------->MYC3                                                              <-------MYC3                                                              <-------MYC2                                  <------ZmHOX2a(1)           ------->MYC2                             <---------MYB52(1)            <---------ANAC46                      ----                        <---------WRKY18(1)      <---------WOX13(1) <---------ANAC58      <----------DOF2                     <---------ICU4            --------->MYB52(2)  <---------At4g35610 <---------ARR11(3)                   --------->GLK1(2)           --------->ATHB12--------->ALFIN1        --------->ARR11(3)                  <---------GLK1(2)  <---------AtMYB61     <---------ANAC58        --------->ANAC46 ---->GT1    ---------->DOF2<-------GAMYB  ----------->GT1 <---------ANAC58        --------->ANAC55(2)   tcaatggatagcataaaaaggaatcttgaccgttgaggagtggtatggttaattggttatggcatgtgttgctcaccactggtttacgagacctttcgcc  4371500          <---------ZAT14                                       <---------TOE2(3)               <----       ----------->GT1    <-----------HVH21                <----------DOF2                   <-------   ---------->DOF2       <---------ZAT6           <---------ZAT18     <---------YAB1--------->AtLEC2 ------>DOF2  --------->ALFIN1       ----------->HVH21   ---------->ID1<-----------GT1  ---------->DOF2   aaagagaaagggtgaagtgatgcattagtgtcagagcaagggacatgtacaatgcccttgtctttttatgttattactaaattgccatgtaaaagctttc  4371600                                           --------->ATHB12                                           --------->ATHB51                      <----------DOF2                                          <---------YAB1                       <---------ATHB12                                       --------->AHL20(1)                --------->YAB1    <-------GAMYB                                       <---------AHL20(1)           <---------ANAC58      <---------MYB46(3)                                       --------->AHL20(2)           <---------ANAC55(2)   --------->MYB111(2)              <---------AHL20(1)       <---------AHL20(2)           <---------ANAC55(1)   --------->MYB55(2)              --------->AHL20(2)    --------->AHL20(2)              <---------ANAC46 <---------At5g28300       ----------->GT1              <---------AHL20(2)              --------->ANAC55(2) <-------GAMYB -----AtLEC2  --------->AHL20(1)   <---------AHL20(2)         <---------YAB1 --------->WOX13(1) ----- ---DOF2<------ZmHOX2a(1)          --------->AHL20(2)<-----------GT1<---------ANAC58 <---------LBD16   atggccaataggaaaatataatatgttccatactgaattaatttattattggttttaatcgtttttgattacgtataatcaatctttcacggttgttaga  4371700                                                         ----------->GT1                                                     --------->ATHB12                                                     <---------AHL20(2)      <---------MYB52(1)                                                <---------TOE2(3)     <---------YAB1             ----                                               <---------AHL20(2)    <---------AHL20(2)         -----                                       <---------ANAC46  <---------MYB46(3) ----------->GT1     <----        ----------->GT1         <---------YAB1 --------->AHL20(2)    <---------AHL20(1)        ------   ----------->RAV1(1)         --------->ARR11(3)   <---------YAB1   --------->AHL20(2)   --------->TOE2(3) --------->ZAT18               <---------ARR11(3) <---------ICU4     --------->AHL20(1)  ----------->GT1 ----->DOF2  ---------->DOF2  --------->YAB1   --------->YAB1       --------->YAB1  <---------AHL20(2)   aagtgcaacaatgtgaaaagtattcgtgaaaatgatatttgatgtgtattaatatttattggttaatctaatataatacggtatttttaattcgttaaaa  4371800  Previous    Next  AGI:  At1g12820.1    Description:  AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase. Identical to Protein AUXIN SIGNALING F-BOX 3 (AFB3) [Arabidopsis Thaliana] (GB:Q9LPW7); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G26810.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50561.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50554.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49078.1); contains InterPro domain Cyclin-like F-box ( Range:  from: 4368758    to: 4371291    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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