Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------DAG2                               <----------DOF2                           ------>ZmHOX2a(2)                         <---------ARR14(2)                         --------->ARR14(2)                      <---------HSFB2a(2)                      --------->HSFB2a(2)                   --------->GLK1(2)                                           --------->MYB52(1)           ---------->DOF2<------ZmHOX2a(2)                                    ----------->RAV1(1)          --------->AHL20(2)<---------ALFIN1                               --------->At4g35610 --->GLK1(1)     --------->HSFB2a(1)                                       <---------At4g35610 ----GLK1(1)     --------->HSFC1(2)                                     --------->At4g35610        <- -->ARR11(3)     <---------HSFB2a(1)  <---------STY1(2)            --------->YAB1 ------->GAMYB   <-- ---ARR11(3)     <---------HSFC1(2)   --------->STY1(2)   <-----------GT1<---------ICU4  --------->GLK1(1)   tctcaatgtcaataaaagaagcttctggatccacttttctagctactatctgtataaatttcaccattaacatcatcagcacaacagagagaaatcgaaa  4364900                                                                    ------>NtERF2                                      --------->TOE1(3)    <-----------ARR10                             <---------ARR11(3)            <---------ARR14(2)                         --------->ANAC58                  --------->ARR14(2)   ---------->DOF2         ---------->DOF2 --------->ANAC58               <---------ANAC46 <---------DOF5.7(2)   <---------AHL20(2)    --------->ANAC46               <---------ANAC58 --------->MYB52(1)  --------->AHL20(2)     --------->ANAC55(2) ---------->DOF2       --------->DEAR3(1)   <---------At4g35610 --------ANAC55(2)     <-----------GT1--------->TOE2(3) <---------ANAC58<---------ZAT14 --------->At4g35610 -----TEIL        <---------MYB52(1)  <---------DAG2   <---------LBD16  <---------ARR14(2)          -   tacataaaattcaaagaaccgttttttacgaaatctctcaccttagccaaagtcaatttcgggtcttcgccgagtaaacggccaaagttgagctccattt  4365000            <---------At4g35610                                                 <---------MYB52(1)            --------->At4g35610    --------->At4g35610                <---------GLK1(2)          ----        <---------MYB52(1)    <---------HSFB2a(2)                --------->MYB52(1)             -----      <---------MYB46(3)      --------->HSFB2a(2)             --------->At4g35610               <---- ----->ZmHOX2a(2)          <----------DOF2                    <---------At4g35610         --------->ZAT6   gatcccattcgttgagcttaggctcttctcttttcgaagcagaaactaaaaacttcttctgtttagctaacaaattctctcggtttcttctcactctaac  4365100                                                    <------NtERF2                                                    --------->ATERF1(1)                                                  <---------ANAC46                                                 <---------LBD16                                                 <---------At4g35610                                                 --------->At4g35610                                                 <------NtERF2                                                 --------->ATERF1(1)                                                 --------->RAP2.3(1)                                                <---------ATERF1(1)                                                <---------ERF1                                                ------>NtERF2                                                <---------ORA47(2)                                                <---------RAP2.6(1)                                                <---------RAP2.3(1)                                                <---------DEAR4(2)                                                <---------RRTF1(1)                                               <---------RAP2.3(2)                                               <---------RAP2.6(2)                                               <---------RRTF1(2)                                               --------->DEAR3(1)                                               --------->ATERF1(2)                                               <---------RRTF1(3)                                               <---------DEAR3(1)                                               <---------ATERF1(2)                                               <---------RAP2.3(3)                                               --------->ALFIN1                                               <---------ANAC46                                              ------>NtERF2                                              <------NtERF2                                              <---------ABI4(1)                                              --------->ATERF1(1)                                             <---------ATERF1(1)                                             <---------RAP2.3(1)                                             <---------ORA47(2)                                            <---------RAP2.3(2)                                            <---------RAP2.6(2)                                            <---------DEAR3(1)                        --------->LBD16     <---------RRTF1(2)                        ------>NtERF2      --------->SPL7                       <---------LBD16     <---------ABI4(1)                      <---------LBD16      --------->ATERF1(1)                  --------->HSFB2a(1)     --------->ALFIN1                  <---------HSFB2a(1)   <---------ANAC58                  <---------HSFC1(2)    <---------ANAC58         --------->ANAC58              <---------DEAR3(1)         --------->ANAC58              --------->MYB55(2)           --------->DAG2 ----->TOE1(3)   <---------KAN4(2)     <---------MYB46(3)       <------ZmHOX2a(1) ---->ZAT6     <------ZmHOX2a(1)  --------->At4g35610  --------->At4g35610                         -- -------------AGL1--------->HSFC1(2)  <---------ANAC46 <---------At4g35610      <-------TEIL---------   cctagaaggaaacgacaggaattttccggcgagagaagcggagggtgcggcggcggaagcggaagaggataaggcgagaacgtccattttccgattaagc  4365200                                       --------->YAB1                              <---------At4g35610                                      <---------ATHB12                             --------->At4g35610                           <---------ICU4                                     <---------ANAC58           <---------AHL20(2)   <---------PCF2                                <---------ANAC46     --------->YAB1        --------->ATHB12        <----------DOF2            <---------ANAC58    <---------YAB1         --------->YAB1          <---------DAG2         <-------GAMYB -------->DOF2           --------->GLK1(2)   <-----------GT1             <-----------RAV1(1) ->DOF2<---------YAB1--------->YAB1 --------->WOX13(1)   <---------AHL20(2)<---------MYB52(1)   cgaaagatgataatttatacgaatgagaatcatgggtccaatcaaaatcacgactttattttatctcgagtgagactgttgcttgagctctgtctcttac  4365300                                                    <----------DOF2                                                    <---------DAG2                                                <------ZmHOX2a(1)                                            <------ZmHOX2a(1)                                         <------NtERF2                                       <---------DEAR3(1)                     <----------DOF2                                       <---------ANAC58                       =======================                       <------ZmHOX2a(1)--------->LBD16                  <-----------GT1               --------->ZAT14         <---------ANAC58           ------------>CBF------>ZmHOX2a(1)               <---------ZAT14         <---------ANAC46         <---------At4g35610              ----          --------->ZAT18    *TSS     <---------LBD16           --------->At4g35610             -----   tctccccctatgtgaactacagagaggaagaaatggctatggcggaggaaggagctttatcagtttagctcaatatttcgcttcctggttgaaccagtaa  4365400                <---------REM1(1)             <---------MYB46(3)            <--------P           <-------GAMYB         --------->ALFIN1        ------->MYC2        ------->MYC3        <-------MYC3        <-------MYC2        ------->PIF5        <-------PIF5        <-------MYC4        ------->MYC4       ==============MYC_MYB       <---------O2       --------->TGA1a       ============MYC_MYB       <---------TGA1a       --------->ANAC55(2)       ========================================bZIP_DOF       <---------ANAC55(2)                                                                   <-------       --------->O2  <------ZmHOX2a(1)                        <---------MYB52(1)        --------->ANAC46      ------------>OsbHLH66                       <-----------GT1   <---------ANAC58    --------->O2 ================bZIP_DOF                        <-----------GT1    <---------ANAC46    --------->bZIP60(2) ------->GT1<---------WOX13(1)                  <---------AHL20(2)  <---------ANAC58    <---------O2 ---->DAG2<---------MYB46(3)        ---------->DOF2          <-------GAMYB            <---------ALFIN1   ggtgaagacacgtggttgatgaaggagcaactacaaaaaaaagattgcattttaacgtcttgccgttgtttcgttttagagatgaactacacgtcgtttt  4365500                   <---------ARR11(1)                   --------->ARR11(3)                   <-----------ARR10                  <---------CCA1(2)              <-----------HVH21                                                               -------              --------->TOE2(3)                  <---------YAB1                             <--------              --------->TOE1(3)        --------->ATHB12                                 <---------GLK1(2)            <---------TOE2(3)     --------->ANAC58                                    --------->ANAC58         --------->DOF5.7(2)      --------->ANAC46                                    --------->ANAC58        <----------DOF2           --------->ANAC58--------->YAB1                    ---------->DOF2 --MYB52(1)<---------DOF5.7(2)  --------->ANAC46 <---------ATHB12             <------ZmHOX2a(1)   ttgaaatttgctttaacgtcaaatcttttcatacacgcgtaagattgggctatcatgggcctaaaattggcccaatagaaggatgggaaagaaactcaaa  4365600                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                        <---------ARR11(3)                                                                                        --------->ARR11(3)                                                   <---------CCA1(2)                   --------->CCA1(1)                                                  <---------AHL20(2)                   --------->RVE1(1)             ------>MYB46(1)                     --------->YAB1                 <---------ARR11(3) --->DOF2  <---------MYB59          <XXXXXXXXXXXXXXXXXXXXMIR162A/B>>>>>>>>>GATA-1 >>>>>>>>>RAP2.2 -------AGL15------>MYB83          ------->TEIL <---------YAB1  ----------->GT1<---------CCA1(2)   gaagaaaactctaccaaataatccatgtttttttatgtatgcagaagtttattatatctgtatatatagataaacactgatatatctaaatatctaatgc  4365700                                        --------->AHL20(2)                                   <---------YAB1         <---------AHL20(2)      ----------->GT1 <---------TOE2(3)           <---------YAB1                              <---------DEAR3(2) ----ZAT14               --------->ANAC55(2)             <---------TOE1(3)          ---------->DOF2 --->ZAT14               <---------ANAC55(2) <---------YAB1          <-----------RAV1(1) ----ZAT18            <---------ZAT14   <---------AHL20(2)           <---------ANAC46 --->ZAT18            --------->ZAT14  <---------AHL20(2)<---------TOE2(3)  <-------TEIL<----------ID1   actgaggctatttcattgtttcagtttacttaacattgttatttattttgatatcgattagggtttggattttgtgggttcgtcataaaagggactagag  4365800  Previous    Next  AGI:  At1g12800.1    Description:  S1 RNA-binding domain-containing protein. similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G23700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68047.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63706.1); contains InterPro domain S1, RNA binding; (InterPro:IPR003029); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 4361549    to: 4365329    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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