Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <----------DOF2      <---------ANAC58                                                 --------->YAB1      <---------ANAC58                                     <-----------HVH21                 --------     <-------TEIL                                         ------>ZmHOX2a(1)   <---------AHL20(2)    --------->ARR11(3)                                  <---------ANAC58     --------->AHL20(2)  --------->HSFC1(2)                                    <---------ANAC58--------->TOE2(3)   <--------  --------->HSFB2a(1)                         --------->ANAC58         ----------->GT1      <--------  <---------HSFC1(2)                          --------->ANAC46        <---------YAB1        --------- <---------TOE2(3)               <---------YAB1  ----------->RAV1(1)  <---------TOE2(3)   <---------TOE2(2) <---------TOE1(3)    --------->AtLEC2        --------->ANAC58    <---------GLK1(2)       <---------TOE1(2)   gtgaaggttcttgttcaactttccatgcattgctcattatacaaacaccagcaacatttcctgtcagagattatcgtaaattaatccaatcgcagattct  4360900                               --------->WOX13(1)                              <---------ICU4        ------->TEIL         <---------ATHB12 ->GLK1(2)                   <---------YAB1 -ARR14(2)                 --------->YAB1 -GLK1(2)          --------->TOE2(3)                   --------->YAB1 >ARR14(2)        <---------ICU4                      <---------ATHB12                 --------->ETT(2)   cagtaacatgaatctactaaacattagactcatcattcaaatttcgcagtaatcaaatcaaaacacatatcgcctaatttgagaacttatcgacatttct  4361000                 <-------TEIL                --------->CCA1(2)               --------->ARR14(2)                                                           =========               <---------ARR14(2)                                        ------>NtERF2      ------>ZmHOX2a(1)           <---------At4g35610          <---------TOE1(2)        <---------AHL20(2)     --------->ARR14(2)           --------->At4g35610          <---------TOE2(2)       --------->AHL20(2)      <---------ARR14(2)    --------->ARR11(3)                 ------>ZmHOX2a(1)   --------->At4g35610         <---------GLK1(1)   acataagaaattgagcagatacagagtcgaattcaagtttcctagatttgatttgaatcacagctataaaatcgacaccaaaattttgcaaatcctagac  4361100                         --------->YAB1                   <---------RVE1(1)                              <---------bZIP60(1)                   --------->GLK1(1)                              --------->ANAC58               ------>ZmHOX2a(2)                                  --------->bZIP60(1)             --------->ARR14(2)                                ----------->HVH21             <---------AGP1                                    ----------->TGA1             <---------ARR14(2)                              <---------At4g35610           ----------->ARR10                            --------->ANAC46        <---------ANAC46<---------YAB1               <-------TEIL --------->ANAC58   --------->ATHB12<---------CCA1(1)                --------->CCA1(2)                        --------  <---------YAB1  --------->ARR14(2)               --------->ARR14(2)         --------->ARR11(3) <--- <---------TOE2(3)<---------ARR14(2)               <---------GLK1(2)          <---------ARR11(3) <--- =====================HOX2a_HOX2a        <---------MYB46(3)  --------->At4g35610------>ZmHOX2a(2)<---   tctaacgattgagtagatcggatattttgataacagagaagagtggttacctagattcacgagaggtgacgaaacttgatgatctgttgagacactgtag  4361200            ------>NtERF2           <---------ETT(2)           --------->DEAR3(1)          --------->ATERF1(1)          <------NtERF2         ------>NtERF2         <---------ATERF1(1)         <-----------HVH21        --------->O2    --------->HSFB2a(1)                      <------ZmHOX2a(1)        --------->RAP2.3(2)                                    <---------TOE2(3)        <---------O2    <---------HSFB2a(1)                <------NtERF2       --------->RRTF1(1)                                  <-------GAMYB       <------NtERF2    <---------HSFC1(2)                <---------MYB46(3)       --------->RAP2.3(1)                               <---------ANAC58                        <---      --------->LBD16   --------->HSFC1(2)               <---------ANAC46     --------->YAB1   <-----      ------>NtERF2    ------->TEIL               --------->ARR11(3)          <---------ICU4   <-----     --------->ANAC46 <---------ARR14(2)          <---------ARR14(3)         <---------YAB1    ------    <---------LBD16--------------->AtSPL3         <---------ARR14(2)         --------->ICU4    ------   =================================HOX2a_HOX2a   <---------ARR11(3)       <--------HAHB4   <--------HAHB4   ------>ZmHOX2a(2)  --------->ARR14(2)          --------->ARR14(3)       <---------ICU4   --------- ->ZAT14--------->DEAR3(1)      <---------ZAT6    --------->GLK1(2)   *TSS --------->YAB1   <-------- ------ANAC58     >>>>>>>>>WRKY18    <---------HSFB2a(2) <---------ANAC58 --------->AHL20(2)--------- ------ANAC46    --------->WRKY12    --------->HSFB2a(2)<---------LBD16   --------->ICU4   --------->AHL20(2) ------ANAC58<------NtERF2   ------>ZmHOX2a(1)    <-----------ARR10----------->TGA1        --------->ICU4   cttgatcccgccgtcgccattgacgaacctcctagagttatagaaattcgaaaatcttggcggatgaggatgacgaataattatcaaatttgaataatta  4361300            =========================bZIP_DOF            ====================================MYC_MYB            --------->ANAC46            --------->TGA1a                                                                   <------            --------->O2                                                                      <------            <---------ALFIN1                                                                  <------     <---------ANAC58                                                                         <------     <---------ANAC58                                                                         <------ ---------CBF                                                                            --------->ANAC46 ----AHL20(2)                                                                          <---------ALFIN1 ----AHL20(1)                                   <---------YAB1                      --------->ANAC46 --->AHL20(2)                          -------->P                                 --------->ANAC58 --->AHL20(1)                         --------->MYB52(1)                          --------->ANAC58 >ATHB51    <---------O2             ----------->HVH21  ----------->TBP           --------->ANAC46 -ICU4    <---------ALFIN1<----------DOF2    <-------TEIL   <-----------GT1      --------->SPL7     < >YAB1  --------->SPL7 ------>NtERF2 ------>ZmHOX2a(1)<-----------TBP      <-----------GT1    <------   attgttttcgtcccacatcgctctccgactttggttctcctaaccggttcatgagtatatataaaccggttttgaattctccatacgctccacattacgt  4361400          --------->ARR14(1)         --------->ARR14(2)                                                           <---------ANAC46         <---------ARR14(2)                                                           <---------ANAC58         --------->ARR11(3)                                                      --------->ATHB12         --------->ARR11(1)                                                     <---------YAB1       ----------->ARR10                                                        <------ZmHOX2a(2) ---ANAC55(1)            <---------ARR14(2)                                    --------->ARR11(3) ---ANAC58<---------GLK1(1)                                       =====================HOX2a_HOX2a ---YAB1 <---------ARR11(3)   --------->ANAC55(2)            <----------DOF2   <---------ARR11(3) ---ANAC58--------->GLK1(1) <-----------GT1               <-----------GT1     <------ZmHOX2a(1) ---ANAC55(2)            <---------GLK1(2)              <---------ANAC58--------->GLK1(1)   --------- ---------TOE2(3)        --------->ARR14(2)       <---------YAB1  ------>ZmHOX2a(1)   <---------ANAC58 ---ANAC46--------->CCA1(2)<-------TEIL <----------DOF2 <---------ANAC58<---------GLK1(1)   ---------   ttgaggtcgaagatatgctactgatcagattcacttgatggtctttcaaactataatttcttactttcctatggatatcaggatcatagggtgcaagcct  4361500                --------->YAB1          --------->bZIP60(1)       ----------->HVH21                               ------>ZmHOX2a(1)     <---------AtLEC2                           --------->AHL20(1)                 ----------->GT1   --------->AtLEC2                             <---------AHL20(1)             <------ZmHOX2a(1) >ANAC58  --------->TGA2(1)--------->GLK1(2)    --------->AHL20(2)          <-----------RAV1(2) >ANAC58  <---------bZIP60(1)                   <---------AHL20(2)       ------>ZmHOX2a(1)        <--   aaaccatgcatgacataacaataagagagaatttgttagcctgtaagtaatataatcctataatctacttcattcctcacaggagaggtgattctacata  4361600               <-----------RAV1(1)            --------------->AGL15            <----------DOF2           <---------ANAC58           <---------ANAC58       <---------ANAC58                        <------ZmHOX2a(2)       <---------ANAC58                       <---------ARR11(3)     --------->GLK1(2)                        --------->ARR11(3)    <---------GLK1(2)                     ---------->DOF2                          <---------REM1(1)    <---------ARR14(2)                  <---------AHL20(2)                      <-----------RAV1(1)    --------->ARR14(2)             --------->AHL20(1)                   --------->ANAC55(2) <---------HSFB2a(2)               <---------AHL20(1)        --------->TOE2(3) <---------TOE2(3) --------->HSFB2a(2)               --------->AHL20(2) --------->ICU4    <---------ANAC55(2) ---------GT1  <---------MYB46(3) <---------CCA1(2)<------ZmHOX2a(1) <---------ATHB12   tttccagattcttgcttttgttgggaaaatgttttcatatattaaaaagatcaggaagtattacattagaaatcatgtattgatgttgtagacttggtat  4361700                                                                                                  ---                                                                                             --------                                                                                             --------                                            <-------TEIL                                     --------                                          >>>>>>>>>GATA-1                              <------MYB83--                                          <---------ARR14(2)                           <------MYB46(1)                                          >>>>>>>>>GATA-4               <---------YAB1<---------MYB46(3)                                          >>>>>>>>>GATA-2           --------->ARR14(2)<---------AtMYB61                 <----------DOF2          >>>>>>>>>GATA-3           <---------GLK1(2)<---------MYB52(1)           <-----------GT1              <---------ZAT18        ------>ZmHOX2a(1)    <-------GAMYB <--         --------->YAB1         --------->AHL20(2)            --------->TOE2(3)    <-----------RAV1(1)   aagtcttcgaatgataccactttcaagaatacaaaaaaatagtggattcattcattccttccttcctcaatattctcattctactctgttggtgcaagac  4361800  Previous    Next  AGI:  At1g12790.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO44590.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994) Range:  from: 4359149    to: 4361270    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12800.1    Description:  S1 RNA-binding domain-containing protein. similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G23700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68047.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63706.1); contains InterPro domain S1, RNA binding; (InterPro:IPR003029); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 4361549    to: 4365329    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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