Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------YAB1                                         --------->ATHB51                                         <---------ICU4                                         -------->ATHB1                            <---------ARR11(3)         <---------ANAC58   --------->ARR11(3)   <----------DOF2         <---------ANAC58  --------->GLK1(1)<-----------GT1   <-------TEIL          --------->YAB1 <---------ATHB51 -----TEIL              <---------YAB1  --------->ICU4 ----->CCA1(2)        <---------ICU4    --------->AHL20(2) ----->ARR14(1)       --------->YAB1    <---------AHL20(2)                                ----------- ---->ARR14(2)       --------->ICU4--------->ANAC58                                       ----------- ---->ARR11(1)     --------->YAB1  --------->ANAC46                                  <---------ICU4 -----ARR14(2)    --------->ICU4   --------->ANAC58                                 <---------ATHB12   tacgatgcattgtttgtgaaatgataatgatatctatacgaaattattacacttttgtttgtttttgatttttggtttggaaactaatcaggtctgtaca  4350700                            --------->MYB46(3)      ------->TEIL   <---------ANAC58                               --------->ETT(2)     <---------CCA1(2)     >>>>>>>>>>>>>>>>>LFY            <----------DOF2                     ------ ---->AtSPL8         <---------ANAC58                  <----------DOF2                  <---------GLK1(1) ---->AtSPL3    <----------DOF2 <---------ATHB12 <-----------GT1    <---------ETT(2)    --------->GLK1(1)   tctatctgtatctatcttcttttacttgaaaccaatgttttgtagtttgtattacctctttctttctcagtcgacctcgaattgttagagatttccatca  4350800      <----------DOF2                        <---------TOE1(3)     ------>ZmHOX2a(2)             <---------MYB46(3)    <------ZmHOX2a(2)             <---------WOX13(1)   <---------ARR14(2)            >>>>>>>>>ARR2      <-----------GT1   --------->ARR14(2)           --------->ATHB12   <-----------GT1                               <---   --------->ARR11(3)          <---------YAB1<---------TOE2(3)                                 ------   <---------AGP1        <---------YAB1     ---------->DOF2                            >>>>>>>>>GATA-1   <---------ARR11(3)  --------->YAB1    --------->TOE2(3)                  <---------ANAC58   <-----  <---------CCA1(2)   <---------ATHB12   <----------DOF2                    <---------ANAC58 -------- --->YAB1             ----------->TGA1<-----------GT1           <----------DOF2      ----------->GT1   tcgtagatctttagtcatgtctcaatgacgattttgattgttactttaaagtttttccaatttgttctttggtctcttgcttaagtatagataaatgata  4350900                                  ----------->GT1     ------>MYB46(1)                                 ----------->GT1      ------>MYB83                             <---------YAB1         <---------MYB59                            --------->AHL20(2)      <---------MYB46(2) ------YAB1                 <---------AHL20(2)      --------->AtMYB61                         <------ --->bZIP60(1)             --------->YAB1           <---------MYB111(1)                <---------ANAC46 ----bZIP60(1)         <---------YAB1         <-------TEIL ------>MYB46(1)<----------DOF2 --------->ARR14(2) ->YAB1           --------->AtMYB61      --------->AHL20(2)------>MYB83   <---------DAG2  <---------ARR14(2)   tcatttctagctcaaaaacaccatcactattaaaattggaaaaaaaaatacataccaaaccaaatcagattagaccctttttttttagagcgtatacttt  4351000                                                              *TSS        ----------->RAV1(2)                                                            --------->AHL20(1)                                                            <---------AHL20(2)                 <-----                                         <-------TEIL------->TEIL       <---------ARR14(2)     <-----                   <---------ATHB12     --------->CCA1(2)   --------->AHL20(2)                 ------ ----DOF2------------>CBF          ---------->DOF2<---------ATHB12      --------->ARR14(2)   <-------   gacaaaatttgaacaatacaaatcaaactcgagtcagaaaagattcaaacaaatgaatcaaattttttgagtcggaacctgaagtattttagtccgttcg  4351100                                                 ----------------->AGL1                                                 <---------LBD16                       --------->ARR14(2)                                                <-----------------AGL1              --------->HSFB2a(2)                                            <---------ANAC58                       ----------------->AGL1                                            <---------ANAC58                <----------DOF2                                          <---------MYB46(3)               --------->TOE2(3)                                          --------->MYB55(2)          <---------MYB46(2)                                         <--------P     <------MYB46(1) ------>MYB83<---------HSFB2a(2)                                        <---------MYB52(1)            <---------MYB52(2) ---------->DOF2                        <-------GAMYB   <------MYB83  <---------MYB59--------->LBD16 ----ANAC58        --------->MYB52(1)  --------->LBD16  ----------->GT1 ------>MYB46(1)<---------ARR14(2) ----ANAC58        ------->TEIL    --------->ARR14(2)  --------->MYB59<---------MYB111(1) --->MYB52(2)  <---------KAN4(2)   <---------ARR14(2)  --------->MYB46(2)  <---------DAG2 --MYB52(1)    <---------------AtSPL3<---------LBD16 <---------MYB52(1) --------->MYB52(1)   tgataaagaaaaccgagaatgtaccggtttatcttcagacccggttgtttgtccggtttggtaaaattagaacctaacctttttatccagaactggagac  4351200                                                                    <----------DOF2                                                                   <---------ANAC58                                                                   <---------ANAC58                                             ------>ZmHOX2a(1)    <-------TEIL                                           --------->YAB1      --------->At4g35610               <---                               --------->ARR14(2)              <---------At4g35610               <---                               <---------ARR14(2)            <-----------RAV1(2)       ------>ZmHOX2a(1)                --------->ALFIN1      ------>ZmHOX2a(1)   --------->YAB1           <-----------GT1<--     <---------ARR11(3)       <---------CCA1(2)          <---------YAB1  <----------DOF2         <---   tttggaagaactatagaagtgttgttctcttcgtatcgtcctcaatcctcatggagactattatcaggtgcttttctttttcatttctcctcatctatgg  4351300                                                 <-----------HVH21                            -------                                             --------->ARR11(3)                               <------ ------ANAC58                         --------->ANAC58                                 <---------ZAT6 ------ANAC46                         --------->ANAC58                        <---------CCA1(2) --------DOF2                ------>ZmHOX2a(1)  <----------DOF2           <---------ARR11(3) <------- ------ANAC58       <---------YAB1  ---------->DOF2           <------ZmHOX2a(1)  --------->ZAT6     -   ctttgatacgaccatttagtttcttattctcctattgcgaaagctactatctttcacatccctaggaatcggacactatcttatctctagtgttgatatc  4351400                                                                                                  <--                                                                                             <-------                                                                                             -------- -->ARR11(3)    <---------WOX13(1)                                       --------->AHL20(1)  <------NtERF2 ---ARR11(3)  <<<<<<<<<RAP2.2                                            --------->AHL20(2) --------- --GLK1(1)   <---------YAB1                                              <---------AHL20(1)<---------LBD16 ------>TEIL <---------TOE2(3)             --------->LBD16        ------>NtERF2      <----------DOF2   tgtatgttagccatttagattgcctcagagttttttggtttcaccctgagttagaaattgtgagtctcggcctgatatattagaatgcttttggccggac  4351500                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                                  <---------At4g35610                                                  <------MYB83                                                  <------MYB46(1)                                                 --------->MYB59                            <-------MYC3         --------->MYB46(2)       <-----------RAV1(2)                            <-------MYC2         --------->MYB111(1)    ------>NtERF2                            ------->MYC2         --------->MYB52(2)     <------NtERF2                            ------->MYC3         --------->MYB111(2)    <-----------HVH21                    <---------At4g35610         <---------MYB55(1)     --------->ANAC46     <---------ANAC46    ----------->RAV1(1)   <---------MYB52(1)      --------->ANAC58  --------->ALFIN1  --------->At4g35610    <---------ANAC58  <----------DOF2 -------ZAT14     <---------ZAT14          <---------ANAC58 <---------ANAC58  --------->ALFIN1 --SPL7        <---------ANAC46            <---------ANAC46 <---------ANAC58<---------ZAT2         <- ->LBD16  <-----------RAV1(1)    --------->At4g35610   <---------YAB1  --------->ANAC58           <-- >RAP2.6(2)  <---------ANAC46    <---------At4g35610   --------->ICU4 <---------LBD16             ---   tagagtggggttttgttgtgtaaactgccacatgctgctaaattggcttgttaggtgatgatgcttttcatgcccgccaggtgttcgacgaattgcctca  4351600  Previous    Next  AGI:  At1g12760.1    Description:  protein binding / ubiquitin-protein ligase/ zinc ion binding. Identical to E3 ubiquitin-protein ligase At1g12760 [Arabidopsis Thaliana] (GB:Q9LN71;GB:Q2V4N8); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63689.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 4348496    to: 4350865    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g12770.1    Description:  EMB1586 (EMBRYO DEFECTIVE 1586). Identical to DEAD-box ATP-dependent RNA helicase 47 (RH47) [Arabidopsis Thaliana] (GB:Q8W4E1;GB:Q0WLV2;GB:Q9LN70;GB:Q9LPX3); similar to DEAD/DEAH box helicase, putative (RH17) [Arabidopsis thaliana] (TAIR:AT2G40700.1); similar to Os03g0219700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049403.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82264.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR01 Range:  from: 4351062    to: 4353683    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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