Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          ----------->GT1                                                       --------->DAG2                                                      ---------->DOF2                                                --------->ANAC58                --------->TOE2(3)     ------>ZmHOX2a(2)                          --------->ANAC58                --------->TOE1(3)   <---------ARR11(3)                           <----------ID1                 ----------->GT1 ---------WOX13(1)   <-------TEIL              --------->DAG2           <----------DOF2 ---HVH21  ----------->HVH21                  ---------->DOF2        <-----------GT1              ---   agattgatctcaaatgacctcgatacatcgcattgagatactacagcaaaaagccaaaaagtcaaaagtatatactttactacgttaaaacaatattcaa  4348100                                                                    <---------ETT(2)                                                         --------->TOE1(3)                                                         --------->TOE2(3)                                   <-----------GT1    --------->ARR14(2)      --------->YAB1                              --------->YAB1          --------->ARR11(3)     <---------ATHB12                              --------->AHL20(2)      <---------ARR14(2)     --------->MYB46(3)                      --------->YAB1                 <---------CCA1(2)    --------->MYB46(3)                     <---------ATHB12            --------->YAB1     --------->ETT(2)             ---- ------>TOE2(3)    --------->WOX13(1)   --------->MYB52(1)------>ZmHOX2a(1) -------->P  --------->ANAC46   catcaaaaccccaaaacatatcaatcagacaatgaaattacaaaactgaaatcatatatcctcaaatcggtcgtcatcaaccatggttacactgaattag  4348200                                                                                                    -                                                                                  ------>ZmHOX2a(1) -                             <---------At4g35610                        --------->At4g35610         <     --------->At4g35610     --------->At4g35610                        <---------At4g35610 <--------     <---------At4g35610    ------->TEIL          --------->MYB59       ----------->GT1     --------- --------->ALFIN1         ---------->DOF2----------->GT1            --------->LBD16        --------->MYB46(3) ------>DOF2             <---------ATHB12<---------ZAT6             --------->HSFB2a(2)  --------->AtMYB61   aaagtgctgctacatagaaatcgaacaatgaagctcaccgatagagtaaaattaggcatgcttccatctccgagagctaaaatcctagagaccaccactc  4348300     --------->ANAC58                       <---------ANAC58     --------->ANAC58                       <---------ANAC58    <------NtERF2                        --------->WRKY12   ------>NtERF2                         ----------->HVH21  --------->At1g77200                  <----------DOF2  --------->DEAR3(1)                  <---------ANAC46 --------->DEAR3(2)                   <---------ANAC58                                           <--- ----->NtERF2                         <---------ANAC58          ---------->DOF2                  <--- -------->At4g35610               <------------CBF             <---------AHL20(2)                ---- ---------At4g35610           --------->ANAC58            <---------AHL20(1)          --------->O2 -ALFIN1   <---------TOE2(3)  --------->ANAC46            --------->AHL20(1)          <---------O2 >AtMYB61---------->DOF2 *TSS --------->ANAC58    <----------DOF2            ------------>CBF  <-----   tctgccgacgctaaaggttgaagatgaagaagacgacattgctttgacgggccttttaaaaatattaaaagagagacacatcaatacctcgtggcccatt  4348400                                  <-------GAMYB--------->PCF2                                 <---------MYB46(3)         --------->LBD16        >>>>>>>>>>>>WRKY18                             <---------GLK1(1)     --------->ANAC46        --------->WRKY38(1)  <---------ALFIN1             --------->GLK1(1) --------TBP             <---------WOX13(1)    <---------TCP16(1)         <---------LBD16       *TSS ------AHL20(2)         <------------CBF<----------DOF2                <---------DAG2       <-------- ----->AHL20(2)       <---------YAB1--------->WRKY38(1)  ------->TEIL  <----------DOF2    <---------AHL20(2) ------TBP <----------DOF2<---------MYB46(3)   <---------PCF5    <-----------GT1         ------------   tatatagaccccgcttaattttgtctgattgttgactgttgacttttagggaccacatgaaactattaaacgacttttcggatttcaaatattcaattga  4348500                                 <---------ICU4                                <---------YAB1                              <---------ICU4                             <---------YAB1                                          --------->ANAC58                           <---------ICU4                                            --------->ANAC46                           --------->YAB1                                            --------->ANAC58                          <---------ATHB12        --------->At4g35610             <---------REM1(2)    <---------YAB1    <---------MYB52(1)        <---------ICU4                 <----------DOF2 ----CBF             --------->TOE2(3)       <---------ICU4                <----------DOF2        --- >CBF       <---------MYB52(1)--------->YAB1 --------->YAB1              ------>ZmHOX2a(1)        ---   gagattatttttctgttaatttcccttaatcatcatcatcgtcttcatcatcatctctctctcttctcttcgttcctctttctttacacgcttgaaaccc  4348600                                                             ------->TEIL                              --------->YAB1              --------->ANAC46                            --------->ARR14(2)            --------->ANAC58                            --------->GLK1(2)      ----------->GT1                           <---------GLK1(2)     --------->MYB52(1)                   ------>ZmHOX2a(1)          <---------bZIP60(1)                  <---------------AGL15       --------->bZIP60(1)                  --------------->AGL15       <---------ANAC46                 ----------------->AGL3       <---------ANAC55(2)            <---------ANAC58--------->ARR11(3)<---------ANAC58            <---------ANAC58<---------ARR14(2)<---------ANAC58            <---------TOE1(3) ------>ANAC58 --------->ARR14(2)             --------->ANAC55(2)         <---------TOE2(3) ------>ANAC58 <---------ARR14(2)    <----------DOF2      --------->ANAC58--------->MYB59   tagcaatttcaatttcgtttcctctaatagaatcttcatctttttatggcgtaacgttacacgaatttcaacgatttaggttttttttttttttttttga  4348700                                                                                                   <-                                        <---------LBD16                                   --------->ANAC58                            <---------At4g35610       --------->TOE2(3)                   --------->ANAC58                            --------->At4g35610     ------>ZmHOX2a(1)         <-----------TGA1 <-----                           --------->MYB52(1) <---------HSFB2a(1)         <---------ICU4  --------->ANAC46                          <---------WRKY12--------->LBD16              --------->YAB1   ------>NtERF2                          <---------WRKY38(1) --------->HSFB2a(1)      <---------ICU4  ----------->HVH21               ----------->GT1------->GAMYB--------->At5g28300        <---------YAB1 ================              --------->CCA1(2)        <---------ALFIN1<---------MYB52(1)<---------YAB1--------->DEAR3(1)         ---------->DOF2<-----------HVH21--------->ANAC46           --------->YAB1   ------>ZmHOX2a(1)   agaatcaaacacaaagatagaaacaatgtcaacggagactaccacgggaaattcctcgttaattccagcatcatcatcatcgtcatcctccgacgcaatc  4348800                                                                             <------ZmHOX2a(1)                                                                            --------->At4g35610                                                                      ==============HOX2a_HOX2a                                                                    --------->AGP1                                                                    <---------ARR14(2)                                                                    <---------AGP1                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                                                                    --------->ARR14(2)                                                                   <---------GLK1(1)             <----------DOF2                                 --------->MYB52(1)             <---------DAG2                             <---------ANAC46    <---------At4g35610            <---------ANAC58                            --------->ALFIN1   >>>>>>>GRF7            <---------ANAC58                          --------->ZAT2<---------ARR14(3)         <---------MYB52(1)                          <---------AtMYB61------>ZmHOX2a(2)        <-------GAMYB                                --------->ALFIN1<------ZmHOX2a(2)              <    <---------ARR14(2)   <------NtERF2              <------ZmHOX2a(1)===============HOX2a_HOX2a  ----    --------->ARR14(2)  ------>NtERF2               ========================HOX2a_HOX2a         <----   --------->ZAT2    ------->GAMYB                --------->ALFIN1 --------->GLK1(1)            -----   <---------At4g35610 <---------DEAR3(1)        ===========================HOX2a_HOX2a         -----   <---------ZAT2  <---------At5g28300           ============================HOX2a_HOX2a        <----   --------->At4g35610 --------->DEAR3(1)        <------ZmHOX2a(1)----------->ARR10             <---- -----ZmHOX2a(2)  <-----------GT1  <---------TOE2(3)=========================HOX2a_HOX2a        <---- ----ATHB12 <---------ANAC46  --------->YAB1 ------->GAMYB<------NtERF2 <-----------HVH21       ----- =====HOX2a_HOX2a --------->MYB52(1)      --------->MYB52(1)<---------SPL7<-----------RAV1(2)  ------   gatccagctccgttgctttttaacggcgacgataatgaaggaaacaacggaggaggaggtggggaacggagatctgtcaggagacaagggttgagagaag  4348900                                                                               <---------At4g35610                                                                               --------->ZAT2                                                                               <---------ZAT2                                                                               --------->At4g35610                                                                            <---------At4g35610                                      <---------ANAC58                      <---------ZAT2                                      <---------ANAC58                    <------NtERF2                                      <---------ANAC46                    --------->ATERF1(1)                                      <---------ANAC55(1)                --------->LBD16                                      --------->ANAC55(2)               <---------DEAR3(1)                                      <---------ANAC55(2)               --------->ALFIN1                                 ----------->HVH21                      <---------ANAC46                                <-----------HVH21                      <------NtERF2                               <---------ANAC58                        ------>NtERF2                               <---------ANAC58                        --------->ATERF1(1)                               --------->ANAC55(2)                     <---------LBD16                           ------>NtERF2                              ------>NtERF2 ---------ANAC46          <---------SPL7                              <---------ATERF1(1) ----->TOE1(2)            <---------ZAT18                            <------NtERF2 -----ZAT2                ----------->HVH21                         <---------LBD16 ---->At4g35610          <---------ANAC58                           --------->LBD16 ---->ZAT2               <---------ANAC46                           --------->At4g35610 -----At4g35610          <---------ANAC58                           ------>NtERF2  <---------HSFB2a(2) -----HSFB2a(1)         <---------At4g35610                        --------->DEAR3(1) -----HSFC1(2)          --------->At4g35610          <---------ANAC58<---------DEAR3(1)           --- ---->HSFC1(2)<---------ANAC58 <---------ANAC55(2)   <---------ANAC58--------->ATERF1(1)      <------NtERF2 --->GLK1(2)  <---------ANAC58 <---------ANAC46    <---------YAB1 --------->ATERF1(1) <------ZmHOX2a(1)   ctgcgaggtttcttagtcgtgctagtagcggacgcgtgatgcgtgagccatctatgcttgtgagagaagccgcggcggagcagctcgaggagaggcagag  4349000  Previous    Next  AGI:  At1g12750.1    Description:  rhomboid family protein. similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63691.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 4344983    to: 4348325    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12760.1    Description:  protein binding / ubiquitin-protein ligase/ zinc ion binding. Identical to E3 ubiquitin-protein ligase At1g12760 [Arabidopsis Thaliana] (GB:Q9LN71;GB:Q2V4N8); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63689.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 4348496    to: 4350865    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version